CRAN Package Check Results for Package coda

Last updated on 2015-07-02 23:47:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.17-1 1.30 16.98 18.28 NOTE
r-devel-linux-x86_64-debian-gcc 0.17-1 1.02 16.74 17.76 NOTE
r-devel-linux-x86_64-fedora-clang 0.17-1 32.97 NOTE
r-devel-linux-x86_64-fedora-gcc 0.17-1 31.72 NOTE
r-devel-osx-x86_64-clang 0.17-1 33.82 NOTE
r-devel-windows-ix86+x86_64 0.17-1 5.00 27.00 32.00 NOTE
r-patched-linux-x86_64 0.17-1 1.01 17.28 18.29 NOTE
r-patched-solaris-sparc 0.17-1 244.20 OK
r-patched-solaris-x86 0.17-1 46.10 OK
r-release-linux-x86_64 0.17-1 1.09 16.90 17.99 NOTE
r-release-osx-x86_64-mavericks 0.17-1 OK
r-release-windows-ix86+x86_64 0.17-1 5.00 27.00 32.00 OK
r-oldrel-windows-ix86+x86_64 0.17-1 5.00 29.00 34.00 OK

Check Details

Version: 0.17-1
Check: R code for possible problems
Result: NOTE
    acfplot.mcmc : getAcf: no visible global function definition for ‘acf’
    acfplot.mcmc.list : getAcf: no visible global function definition for
     ‘acf’
    acfplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    as.ts.mcmc: no visible global function definition for ‘ts’
    autocorr: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for
     ‘dev.interactive’
    autocorr.plot: no visible global function definition for ‘par’
    autocorr.plot: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for ‘plot’
    autocorr.plot: no visible global function definition for ‘title’
    codamenu: no visible global function definition for ‘menu’
    codamenu: no visible global function definition for ‘lm’
    codamenu: no visible global function definition for ‘sd’
    codamenu: no visible global function definition for ‘residuals’
    codamenu.anal: no visible global function definition for ‘menu’
    codamenu.anal: no visible global function definition for ‘plot’
    codamenu.anal: no visible global function definition for ‘dev.cur’
    codamenu.diags: no visible global function definition for ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘menu’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘par’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.gelman: no visible binding for global variable ‘var’
    codamenu.diags.gelman: no visible global function definition for ‘menu’
    codamenu.diags.gelman: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.geweke: no visible global function definition for ‘menu’
    codamenu.diags.geweke: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.heidel: no visible global function definition for ‘menu’
    codamenu.diags.raftery: no visible global function definition for
     ‘menu’
    codamenu.main: no visible global function definition for ‘menu’
    codamenu.options: no visible global function definition for ‘menu’
    codamenu.options.data: no visible global function definition for ‘menu’
    codamenu.options.diag: no visible global function definition for ‘menu’
    codamenu.options.gelman: no visible global function definition for
     ‘menu’
    codamenu.options.plot: no visible global function definition for ‘menu’
    codamenu.options.plot: no visible global function definition for ‘par’
    codamenu.options.plot.kernel: no visible global function definition for
     ‘menu’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘sd’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘IQR’
    codamenu.options.stats: no visible global function definition for
     ‘menu’
    codamenu.ps: no visible global function definition for ‘dev.cur’
    codamenu.ps: no visible global function definition for ‘dev.off’
    codamenu.ps: no visible global function definition for ‘menu’
    codamenu.ps: no visible global function definition for ‘postscript’
    crosscorr: no visible global function definition for ‘cor’
    crosscorr.plot: no visible global function definition for ‘topo.colors’
    crosscorr.plot: no visible global function definition for ‘par’
    crosscorr.plot: no visible global function definition for ‘plot’
    crosscorr.plot: no visible global function definition for ‘axis’
    crosscorr.plot: no visible global function definition for ‘polygon’
    crosscorr.plot: no visible global function definition for ‘text’
    cumuplot: no visible global function definition for ‘dev.interactive’
    cumuplot : cquantile: no visible global function definition for
     ‘quantile’
    cumuplot: no visible global function definition for ‘par’
    cumuplot: no visible global function definition for ‘matplot’
    cumuplot: no visible global function definition for ‘title’
    densityplot.mcmc: no visible global function definition for
     ‘as.formula’
    densityplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    densplot : bwf: no visible global function definition for ‘sd’
    densplot : bwf: no visible global function definition for ‘IQR’
    densplot: no visible global function definition for ‘hist’
    densplot: no visible global function definition for ‘density’
    densplot: no visible global function definition for ‘plot’
    densplot: no visible global function definition for ‘lines’
    display.coda.options: no visible global function definition for ‘par’
    do.spectrum0: no visible global function definition for ‘var’
    do.spectrum0: no visible global function definition for ‘fft’
    do.spectrum0: no visible global function definition for ‘glm’
    do.spectrum0: Error while checking: invalid ‘envir’ argument
    effectiveSize: no visible binding for global variable ‘var’
    gelman.diag: no visible binding for global variable ‘var’
    gelman.diag: no visible global function definition for ‘var’
    gelman.diag: no visible global function definition for ‘qf’
    gelman.mv.diag: no visible binding for global variable ‘var’
    gelman.mv.diag: no visible global function definition for ‘var’
    gelman.plot: no visible global function definition for
     ‘dev.interactive’
    gelman.plot: no visible global function definition for ‘par’
    gelman.plot: no visible global function definition for ‘matplot’
    gelman.plot: no visible global function definition for ‘abline’
    gelman.plot: no visible global function definition for ‘legend’
    gelman.plot: no visible global function definition for ‘title’
    geweke.plot: no visible global function definition for
     ‘dev.interactive’
    geweke.plot: no visible global function definition for ‘par’
    geweke.plot: no visible global function definition for ‘qnorm’
    geweke.plot: no visible global function definition for ‘plot’
    geweke.plot: no visible global function definition for ‘abline’
    geweke.plot: no visible global function definition for ‘title’
    levelplot.mcmc: no visible global function definition for ‘topo.colors’
    levelplot.mcmc: no visible global function definition for ‘cor’
    plot.mcmc: no visible global function definition for ‘dev.interactive’
    plot.mcmc: no visible global function definition for ‘par’
    plot.mcmc.list: no visible global function definition for ‘par’
    qqmath.mcmc: no visible global function definition for ‘as.formula’
    qqmath.mcmc.list: no visible global function definition for
     ‘as.formula’
    raftery.diag: no visible global function definition for ‘qnorm’
    raftery.diag: no visible global function definition for ‘quantile’
    read.coda: no visible global function definition for ‘read.table’
    spectrum0: no visible global function definition for ‘aggregate’
    spectrum0: no visible global function definition for ‘ts’
    spectrum0.ar: no visible global function definition for ‘lm’
    spectrum0.ar: no visible global function definition for ‘sd’
    spectrum0.ar: no visible global function definition for ‘residuals’
    spectrum0.ar: no visible global function definition for ‘ar’
    splom.mcmc: no visible global function definition for ‘topo.colors’
    splom.mcmc : <anonymous>: no visible global function definition for
     ‘cor’
    summary.mcmc: no visible binding for global variable ‘var’
    summary.mcmc: no visible binding for global variable ‘quantile’
    summary.mcmc: no visible global function definition for ‘var’
    summary.mcmc: no visible global function definition for ‘quantile’
    summary.mcmc.list: no visible binding for global variable ‘var’
    summary.mcmc.list: no visible binding for global variable ‘quantile’
    time.mcmc: no visible global function definition for ‘ts’
    traceplot: no visible global function definition for ‘matplot’
    traceplot: no visible global function definition for ‘title’
    traceplot: no visible global function definition for ‘lines’
    traceplot: no visible global function definition for ‘lowess’
    Undefined global functions or variables:
     IQR abline acf aggregate ar as.formula axis cor density dev.cur
     dev.interactive dev.off fft glm hist legend lines lm lowess matplot
     menu par plot polygon postscript qf qnorm quantile read.table
     residuals sd text title topo.colors ts var
    
    Found the following assignments to the global environment:
    File ‘coda/R/codamenu.R’:
     assign(fname, data, pos = 1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang

Version: 0.17-1
Check: R code for possible problems
Result: NOTE
    acfplot.mcmc : getAcf: no visible global function definition for ‘acf’
    acfplot.mcmc.list : getAcf: no visible global function definition for
     ‘acf’
    acfplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    as.ts.mcmc: no visible global function definition for ‘ts’
    autocorr: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for
     ‘dev.interactive’
    autocorr.plot: no visible global function definition for ‘par’
    autocorr.plot: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for ‘plot’
    autocorr.plot: no visible global function definition for ‘title’
    codamenu: no visible global function definition for ‘menu’
    codamenu: no visible global function definition for ‘lm’
    codamenu: no visible global function definition for ‘sd’
    codamenu: no visible global function definition for ‘residuals’
    codamenu.anal: no visible global function definition for ‘menu’
    codamenu.anal: no visible global function definition for ‘plot’
    codamenu.anal: no visible global function definition for ‘dev.cur’
    codamenu.diags: no visible global function definition for ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘menu’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘par’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.gelman: no visible binding for global variable ‘var’
    codamenu.diags.gelman: no visible global function definition for ‘menu’
    codamenu.diags.gelman: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.geweke: no visible global function definition for ‘menu’
    codamenu.diags.geweke: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.heidel: no visible global function definition for ‘menu’
    codamenu.diags.raftery: no visible global function definition for
     ‘menu’
    codamenu.main: no visible global function definition for ‘menu’
    codamenu.options: no visible global function definition for ‘menu’
    codamenu.options.data: no visible global function definition for ‘menu’
    codamenu.options.diag: no visible global function definition for ‘menu’
    codamenu.options.gelman: no visible global function definition for
     ‘menu’
    codamenu.options.plot: no visible global function definition for ‘menu’
    codamenu.options.plot: no visible global function definition for ‘par’
    codamenu.options.plot.kernel: no visible global function definition for
     ‘menu’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘sd’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘IQR’
    codamenu.options.stats: no visible global function definition for
     ‘menu’
    codamenu.ps: no visible global function definition for ‘dev.cur’
    codamenu.ps: no visible global function definition for ‘dev.off’
    codamenu.ps: no visible global function definition for ‘menu’
    codamenu.ps: no visible global function definition for ‘postscript’
    crosscorr: no visible global function definition for ‘cor’
    crosscorr.plot: no visible global function definition for ‘topo.colors’
    crosscorr.plot: no visible global function definition for ‘par’
    crosscorr.plot: no visible global function definition for ‘plot’
    crosscorr.plot: no visible global function definition for ‘axis’
    crosscorr.plot: no visible global function definition for ‘polygon’
    crosscorr.plot: no visible global function definition for ‘text’
    cumuplot: no visible global function definition for ‘dev.interactive’
    cumuplot : cquantile: no visible global function definition for
     ‘quantile’
    cumuplot: no visible global function definition for ‘par’
    cumuplot: no visible global function definition for ‘matplot’
    cumuplot: no visible global function definition for ‘title’
    densityplot.mcmc: no visible global function definition for
     ‘as.formula’
    densityplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    densplot : bwf: no visible global function definition for ‘sd’
    densplot : bwf: no visible global function definition for ‘IQR’
    densplot: no visible global function definition for ‘hist’
    densplot: no visible global function definition for ‘density’
    densplot: no visible global function definition for ‘plot’
    densplot: no visible global function definition for ‘lines’
    display.coda.options: no visible global function definition for ‘par’
    do.spectrum0: no visible global function definition for ‘var’
    do.spectrum0: no visible global function definition for ‘fft’
    do.spectrum0: no visible global function definition for ‘glm’
    do.spectrum0: Error while checking: invalid ‘envir’ argument
    effectiveSize: no visible binding for global variable ‘var’
    gelman.diag: no visible binding for global variable ‘var’
    gelman.diag: no visible global function definition for ‘var’
    gelman.diag: no visible global function definition for ‘qf’
    gelman.mv.diag: no visible binding for global variable ‘var’
    gelman.mv.diag: no visible global function definition for ‘var’
    gelman.plot: no visible global function definition for
     ‘dev.interactive’
    gelman.plot: no visible global function definition for ‘par’
    gelman.plot: no visible global function definition for ‘matplot’
    gelman.plot: no visible global function definition for ‘abline’
    gelman.plot: no visible global function definition for ‘legend’
    gelman.plot: no visible global function definition for ‘title’
    geweke.plot: no visible global function definition for
     ‘dev.interactive’
    geweke.plot: no visible global function definition for ‘par’
    geweke.plot: no visible global function definition for ‘qnorm’
    geweke.plot: no visible global function definition for ‘plot’
    geweke.plot: no visible global function definition for ‘abline’
    geweke.plot: no visible global function definition for ‘title’
    levelplot.mcmc: no visible global function definition for ‘topo.colors’
    levelplot.mcmc: no visible global function definition for ‘cor’
    plot.mcmc: no visible global function definition for ‘dev.interactive’
    plot.mcmc: no visible global function definition for ‘par’
    plot.mcmc.list: no visible global function definition for ‘par’
    qqmath.mcmc: no visible global function definition for ‘as.formula’
    qqmath.mcmc.list: no visible global function definition for
     ‘as.formula’
    raftery.diag: no visible global function definition for ‘qnorm’
    raftery.diag: no visible global function definition for ‘quantile’
    read.coda: no visible global function definition for ‘read.table’
    spectrum0: no visible global function definition for ‘aggregate’
    spectrum0: no visible global function definition for ‘ts’
    spectrum0.ar: no visible global function definition for ‘lm’
    spectrum0.ar: no visible global function definition for ‘sd’
    spectrum0.ar: no visible global function definition for ‘residuals’
    spectrum0.ar: no visible global function definition for ‘ar’
    splom.mcmc: no visible global function definition for ‘topo.colors’
    splom.mcmc : <anonymous>: no visible global function definition for
     ‘cor’
    summary.mcmc: no visible binding for global variable ‘var’
    summary.mcmc: no visible binding for global variable ‘quantile’
    summary.mcmc: no visible global function definition for ‘var’
    summary.mcmc: no visible global function definition for ‘quantile’
    summary.mcmc.list: no visible binding for global variable ‘var’
    summary.mcmc.list: no visible binding for global variable ‘quantile’
    time.mcmc: no visible global function definition for ‘ts’
    traceplot: no visible global function definition for ‘matplot’
    traceplot: no visible global function definition for ‘title’
    traceplot: no visible global function definition for ‘lines’
    traceplot: no visible global function definition for ‘lowess’
    
    Found the following assignments to the global environment:
    File ‘coda/R/codamenu.R’:
     assign(fname, data, pos = 1)
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.17-1
Check: R code for possible problems
Result: NOTE
    acfplot.mcmc : getAcf: no visible global function definition for ‘acf’
    acfplot.mcmc.list : getAcf: no visible global function definition for
     ‘acf’
    acfplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    as.ts.mcmc: no visible global function definition for ‘ts’
    autocorr: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for
     ‘dev.interactive’
    autocorr.plot: no visible global function definition for ‘par’
    autocorr.plot: no visible global function definition for ‘acf’
    autocorr.plot: no visible global function definition for ‘plot’
    autocorr.plot: no visible global function definition for ‘title’
    codamenu: no visible global function definition for ‘menu’
    codamenu: no visible global function definition for ‘lm’
    codamenu: no visible global function definition for ‘sd’
    codamenu: no visible global function definition for ‘residuals’
    codamenu.anal: no visible global function definition for ‘menu’
    codamenu.anal: no visible global function definition for ‘plot’
    codamenu.anal: no visible global function definition for ‘dev.cur’
    codamenu.diags: no visible global function definition for ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘menu’
    codamenu.diags.autocorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘menu’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘par’
    codamenu.diags.crosscorr: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.gelman: no visible binding for global variable ‘var’
    codamenu.diags.gelman: no visible global function definition for ‘menu’
    codamenu.diags.gelman: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.geweke: no visible global function definition for ‘menu’
    codamenu.diags.geweke: no visible global function definition for
     ‘dev.cur’
    codamenu.diags.heidel: no visible global function definition for ‘menu’
    codamenu.diags.raftery: no visible global function definition for
     ‘menu’
    codamenu.main: no visible global function definition for ‘menu’
    codamenu.options: no visible global function definition for ‘menu’
    codamenu.options.data: no visible global function definition for ‘menu’
    codamenu.options.diag: no visible global function definition for ‘menu’
    codamenu.options.gelman: no visible global function definition for
     ‘menu’
    codamenu.options.plot: no visible global function definition for ‘menu’
    codamenu.options.plot: no visible global function definition for ‘par’
    codamenu.options.plot.kernel: no visible global function definition for
     ‘menu’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘sd’
    codamenu.options.plot.kernel : bwf: no visible global function
     definition for ‘IQR’
    codamenu.options.stats: no visible global function definition for
     ‘menu’
    codamenu.ps: no visible global function definition for ‘dev.cur’
    codamenu.ps: no visible global function definition for ‘dev.off’
    codamenu.ps: no visible global function definition for ‘menu’
    codamenu.ps: no visible global function definition for ‘postscript’
    crosscorr: no visible global function definition for ‘cor’
    crosscorr.plot: no visible global function definition for ‘topo.colors’
    crosscorr.plot: no visible global function definition for ‘par’
    crosscorr.plot: no visible global function definition for ‘plot’
    crosscorr.plot: no visible global function definition for ‘axis’
    crosscorr.plot: no visible global function definition for ‘polygon’
    crosscorr.plot: no visible global function definition for ‘text’
    cumuplot: no visible global function definition for ‘dev.interactive’
    cumuplot : cquantile: no visible global function definition for
     ‘quantile’
    cumuplot: no visible global function definition for ‘par’
    cumuplot: no visible global function definition for ‘matplot’
    cumuplot: no visible global function definition for ‘title’
    densityplot.mcmc: no visible global function definition for
     ‘as.formula’
    densityplot.mcmc.list: no visible global function definition for
     ‘as.formula’
    densplot : bwf: no visible global function definition for ‘sd’
    densplot : bwf: no visible global function definition for ‘IQR’
    densplot: no visible global function definition for ‘hist’
    densplot: no visible global function definition for ‘density’
    densplot: no visible global function definition for ‘plot’
    densplot: no visible global function definition for ‘lines’
    display.coda.options: no visible global function definition for ‘par’
    do.spectrum0: no visible global function definition for ‘var’
    do.spectrum0: no visible global function definition for ‘fft’
    do.spectrum0: no visible global function definition for ‘glm’
    do.spectrum0: Error while checking: invalid 'envir' argument
    effectiveSize: no visible binding for global variable ‘var’
    gelman.diag: no visible binding for global variable ‘var’
    gelman.diag: no visible global function definition for ‘var’
    gelman.diag: no visible global function definition for ‘qf’
    gelman.mv.diag: no visible binding for global variable ‘var’
    gelman.mv.diag: no visible global function definition for ‘var’
    gelman.plot: no visible global function definition for
     ‘dev.interactive’
    gelman.plot: no visible global function definition for ‘par’
    gelman.plot: no visible global function definition for ‘matplot’
    gelman.plot: no visible global function definition for ‘abline’
    gelman.plot: no visible global function definition for ‘legend’
    gelman.plot: no visible global function definition for ‘title’
    geweke.plot: no visible global function definition for
     ‘dev.interactive’
    geweke.plot: no visible global function definition for ‘par’
    geweke.plot: no visible global function definition for ‘qnorm’
    geweke.plot: no visible global function definition for ‘plot’
    geweke.plot: no visible global function definition for ‘abline’
    geweke.plot: no visible global function definition for ‘title’
    levelplot.mcmc: no visible global function definition for ‘topo.colors’
    levelplot.mcmc: no visible global function definition for ‘cor’
    plot.mcmc: no visible global function definition for ‘dev.interactive’
    plot.mcmc: no visible global function definition for ‘par’
    plot.mcmc.list: no visible global function definition for ‘par’
    qqmath.mcmc: no visible global function definition for ‘as.formula’
    qqmath.mcmc.list: no visible global function definition for
     ‘as.formula’
    raftery.diag: no visible global function definition for ‘qnorm’
    raftery.diag: no visible global function definition for ‘quantile’
    read.coda: no visible global function definition for ‘read.table’
    spectrum0: no visible global function definition for ‘aggregate’
    spectrum0: no visible global function definition for ‘ts’
    spectrum0.ar: no visible global function definition for ‘lm’
    spectrum0.ar: no visible global function definition for ‘sd’
    spectrum0.ar: no visible global function definition for ‘residuals’
    spectrum0.ar: no visible global function definition for ‘ar’
    splom.mcmc: no visible global function definition for ‘topo.colors’
    splom.mcmc : <anonymous>: no visible global function definition for
     ‘cor’
    summary.mcmc: no visible binding for global variable ‘var’
    summary.mcmc: no visible binding for global variable ‘quantile’
    summary.mcmc: no visible global function definition for ‘var’
    summary.mcmc: no visible global function definition for ‘quantile’
    summary.mcmc.list: no visible binding for global variable ‘var’
    summary.mcmc.list: no visible binding for global variable ‘quantile’
    time.mcmc: no visible global function definition for ‘ts’
    traceplot: no visible global function definition for ‘matplot’
    traceplot: no visible global function definition for ‘title’
    traceplot: no visible global function definition for ‘lines’
    traceplot: no visible global function definition for ‘lowess’
    Undefined global functions or variables:
     IQR abline acf aggregate ar as.formula axis cor density dev.cur
     dev.interactive dev.off fft glm hist legend lines lm lowess matplot
     menu par plot polygon postscript qf qnorm quantile read.table
     residuals sd text title topo.colors ts var
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.17-1
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘coda/R/codamenu.R’:
     assign(fname, data, pos = 1)
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