CRAN Package Check Results for Package coloc

Last updated on 2014-07-30 01:47:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.51 45.56 47.06 OK
r-devel-linux-x86_64-debian-gcc 2.3-1 1.37 42.52 43.89 OK
r-devel-linux-x86_64-fedora-clang 2.3-1 99.02 OK
r-devel-linux-x86_64-fedora-gcc 2.3-1 96.26 OK
r-devel-osx-x86_64-clang 2.3-1 78.79 OK
r-devel-windows-ix86+x86_64 2.3-1 6.00 67.00 73.00 OK
r-patched-linux-x86_64 2.3-1 1.39 43.27 44.66 OK
r-patched-solaris-sparc 2.3-1 538.30 OK
r-patched-solaris-x86 2.3-1 122.10 OK
r-release-linux-ix86 2.3-1 1.91 54.19 56.10 OK
r-release-linux-x86_64 2.3-1 1.43 43.84 45.26 OK
r-release-osx-x86_64-mavericks 2.3-1 WARN
r-release-windows-ix86+x86_64 2.3-1 6.00 70.00 76.00 OK
r-oldrel-windows-ix86+x86_64 2.3-1 7.00 65.00 72.00 OK

Check Details

Version: 2.3-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: snpStats
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     single.snp.tests
    coloc.abf.snpStats: no visible global function definition for
     col.summary
    fillin: no visible global function definition for col.summary
    fillin: no visible global function definition for snp.imputation
    fillin: no visible global function definition for impute.snps
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in vignette.Rnw
     ...
     values.against
    values.for c(-0.1, 1) c(0.9, 1.1)
     c(-0.1, 1) 1.00000 0.05150753
     c(0.9, 1.1) 19.41464 1.00000000
    
    > library(snpStats)
    
     When sourcing vignette.R :
    Error: there is no package called snpStats
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: colorspace
    Loading required package: MASS
    Loading required package: BMA
    Loading required package: survival
    Loading required package: splines
    Loading required package: leaps
    Loading required package: robustbase
    
    Attaching package: robustbase
    
    The following object is masked from package:survival :
    
     heart
    
    
    Error: processing vignette 'vignette.Rnw' failed with diagnostics:
     chunk 7
    Error in library(snpStats) : there is no package called snpStats
    Execution halted
Flavor: r-release-osx-x86_64-mavericks