CRAN Package Check Results for Package coloc

Last updated on 2014-07-24 17:48:58.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.46 42.93 44.39 OK
r-devel-linux-x86_64-debian-gcc 2.3-1 1.36 45.25 46.61 OK
r-devel-linux-x86_64-fedora-clang 2.3-1 102.03 OK
r-devel-linux-x86_64-fedora-gcc 2.3-1 97.89 OK
r-devel-osx-x86_64-clang 2.3-1 78.79 OK
r-devel-windows-ix86+x86_64 2.3-1 7.00 67.00 74.00 OK
r-patched-linux-x86_64 2.3-1 1.37 42.70 44.08 OK
r-patched-solaris-sparc 2.3-1 538.30 OK
r-patched-solaris-x86 2.3-1 120.90 OK
r-release-linux-ix86 2.3-1 1.94 55.29 57.23 OK
r-release-linux-x86_64 2.3-1 1.42 44.93 46.34 OK
r-release-osx-x86_64-mavericks 2.3-1 WARN
r-release-windows-ix86+x86_64 2.3-1 5.00 69.00 74.00 OK
r-oldrel-windows-ix86+x86_64 2.3-1 6.00 68.00 74.00 OK

Check Details

Version: 2.3-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘snpStats’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘vignette.Rnw’
     ...
     values.against
    values.for c(-0.1, 1) c(0.9, 1.1)
     c(-0.1, 1) 1.00000 0.05150753
     c(0.9, 1.1) 19.41464 1.00000000
    
    > library(snpStats)
    
     When sourcing ‘vignette.R’:
    Error: there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: colorspace
    Loading required package: MASS
    Loading required package: BMA
    Loading required package: survival
    Loading required package: splines
    Loading required package: leaps
    Loading required package: robustbase
    
    Attaching package: ‘robustbase’
    
    The following object is masked from ‘package:survival’:
    
     heart
    
    
    Error: processing vignette 'vignette.Rnw' failed with diagnostics:
     chunk 7
    Error in library(snpStats) : there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks