CRAN Package Check Results for Package coloc

Last updated on 2014-10-02 11:48:03.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.59 42.26 43.84 NOTE
r-devel-linux-x86_64-debian-gcc 2.3-1 1.65 40.78 42.42 NOTE
r-devel-linux-x86_64-fedora-clang 2.3-1 95.24 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3-1 88.37 NOTE
r-devel-osx-x86_64-clang 2.3-1 77.98 NOTE
r-devel-windows-ix86+x86_64 2.3-1 6.00 63.00 69.00 NOTE
r-patched-linux-x86_64 2.3-1 1.63 47.09 48.72 OK
r-patched-solaris-sparc 2.3-1 556.20 OK
r-patched-solaris-x86 2.3-1 126.90 OK
r-release-linux-ix86 2.3-1 2.24 59.15 61.39 OK
r-release-linux-x86_64 2.3-1 1.69 48.20 49.89 OK
r-release-osx-x86_64-mavericks 2.3-1 WARN
r-release-windows-ix86+x86_64 2.3-1 6.00 83.00 89.00 OK
r-oldrel-windows-ix86+x86_64 2.3-1 7.00 76.00 83.00 OK

Check Details

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘snpStats’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘vignette.Rnw’
     ...
     values.against
    values.for c(-0.1, 1) c(0.9, 1.1)
     c(-0.1, 1) 1.00000 0.05150753
     c(0.9, 1.1) 19.41464 1.00000000
    
    > library(snpStats)
    
     When sourcing ‘vignette.R’:
    Error: there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: colorspace
    Loading required package: MASS
    Loading required package: BMA
    Loading required package: survival
    Loading required package: splines
    Loading required package: leaps
    Loading required package: robustbase
    
    Attaching package: ‘robustbase’
    
    The following object is masked from ‘package:survival’:
    
     heart
    
    
    Error: processing vignette 'vignette.Rnw' failed with diagnostics:
     chunk 7
    Error in library(snpStats) : there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks