CRAN Package Check Results for Package coloc

Last updated on 2014-12-20 12:47:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.65 42.89 44.54 NOTE
r-devel-linux-x86_64-debian-gcc 2.3-1 1.64 41.09 42.73 NOTE
r-devel-linux-x86_64-fedora-clang 2.3-1 96.53 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3-1 90.34 NOTE
r-devel-osx-x86_64-clang 2.3-1 83.93 NOTE
r-devel-windows-ix86+x86_64 2.3-1 7.00 64.00 71.00 NOTE
r-patched-linux-x86_64 2.3-1 1.71 44.60 46.31 NOTE
r-patched-solaris-sparc 2.3-1 527.80 NOTE
r-patched-solaris-x86 2.3-1 121.60 NOTE
r-release-linux-ix86 2.3-1 2.11 53.82 55.92 NOTE
r-release-linux-x86_64 2.3-1 1.64 44.80 46.44 NOTE
r-release-osx-x86_64-mavericks 2.3-1 WARN
r-release-windows-ix86+x86_64 2.3-1 8.00 72.00 80.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3-1 7.00 73.00 80.00 OK

Check Details

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.3-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘snpStats’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘vignette.Rnw’
     ...
     values.against
    values.for c(-0.1, 1) c(0.9, 1.1)
     c(-0.1, 1) 1.00000 0.05150753
     c(0.9, 1.1) 19.41464 1.00000000
    
    > library(snpStats)
    
     When sourcing ‘vignette.R’:
    Error: there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.3-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: colorspace
    Loading required package: MASS
    Loading required package: BMA
    Loading required package: survival
    Loading required package: splines
    Loading required package: leaps
    Loading required package: robustbase
    
    Attaching package: ‘robustbase’
    
    The following object is masked from ‘package:survival’:
    
     heart
    
    
    Error: processing vignette 'vignette.Rnw' failed with diagnostics:
     chunk 7
    Error in library(snpStats) : there is no package called ‘snpStats’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks