CRAN Package Check Results for Package coloc

Last updated on 2015-09-01 12:48:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.66 39.90 41.56 NOTE
r-devel-linux-x86_64-debian-gcc 2.3-1 1.71 38.20 39.90 NOTE
r-devel-linux-x86_64-fedora-clang 2.3-1 82.06 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3-1 77.60 NOTE
r-devel-osx-x86_64-clang 2.3-1 69.65 NOTE
r-devel-windows-ix86+x86_64 2.3-1 12.00 71.00 83.00 NOTE
r-patched-linux-x86_64 2.3-1 1.88 40.09 41.97 NOTE
r-patched-solaris-sparc 2.3-1 519.90 NOTE
r-patched-solaris-x86 2.3-1 110.30 NOTE
r-release-linux-x86_64 2.3-1 1.74 40.01 41.75 NOTE
r-release-osx-x86_64-mavericks 2.3-1 NOTE
r-release-windows-ix86+x86_64 2.3-1 9.00 70.00 79.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3-1 14.00 98.00 112.00 NOTE

Check Details

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    approx.bf.p: no visible global function definition for ‘qnorm’
    coeff.plot: no visible global function definition for ‘polygon’
    coeff.plot: no visible global function definition for ‘abline’
    coeff.plot: no visible global function definition for ‘arrows’
    coeff.plot: no visible global function definition for ‘points’
    coeff.plot: no visible global function definition for ‘segments’
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    coloc.bma: no visible global function definition for ‘as.formula’
    coloc.bma: no visible global function definition for ‘glm’
    coloc.bma: no visible global function definition for ‘coefficients’
    coloc.bma : <anonymous>: no visible global function definition for
     ‘combn’
    coloc.bma: no visible global function definition for ‘vcov’
    coloc.combine: no visible global function definition for ‘var’
    coloc.combine: no visible global function definition for ‘pf’
    coloc.combine: no visible global function definition for ‘pchisq’
    coloc.test: no visible global function definition for ‘coefficients’
    coloc.test: no visible global function definition for ‘vcov’
    coloc.test.summary : findmin: no visible global function definition for
     ‘optimize’
    coloc.test.summary: no visible global function definition for
     ‘integrate’
    coloc.test.summary : pv: no visible global function definition for
     ‘pchisq’
    coloc.test.summary : bf.calc: no visible global function definition for
     ‘integrate’
    credible.interval: no visible global function definition for ‘optimize’
    credible.interval: no visible global function definition for
     ‘integrate’
    extra.plot: no visible global function definition for ‘axis’
    extra.plot: no visible global function definition for ‘box’
    extra.plot: no visible global function definition for ‘abline’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
    pcs.model: no visible global function definition for ‘as.formula’
    pcs.model: no visible global function definition for ‘glm’
    pcs.model: no visible global function definition for ‘coefficients’
    pcs.prepare: no visible global function definition for ‘prcomp’
    prepare.df: no visible global function definition for ‘cor’
    sdY.est: no visible global function definition for ‘lm’
    sdY.est: no visible global function definition for ‘coef’
    p.value,coloc: no visible global function definition for ‘pchisq’
    plot,colocPCs-missing: no visible binding for global variable ‘object’
    plot,colocPCs-missing: no visible global function definition for
     ‘abline’
    Undefined global functions or variables:
     abline arrows as.formula axis box coef coefficients col.summary combn
     cor glm impute.snps integrate lm object optimize pchisq pf points
     polygon prcomp qnorm segments single.snp.tests snp.imputation var
     vcov
    Consider adding
     importFrom("graphics", "abline", "arrows", "axis", "box", "points",
     "polygon", "segments")
     importFrom("stats", "as.formula", "coef", "coefficients", "cor", "glm",
     "integrate", "lm", "optimize", "pchisq", "pf", "prcomp",
     "qnorm", "var", "vcov")
     importFrom("utils", "combn")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
    plot,colocPCs-missing: no visible binding for global variable ‘object’
    Undefined global functions or variables:
     col.summary impute.snps object single.snp.tests snp.imputation
Flavor: r-devel-osx-x86_64-clang

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
    plot,colocPCs-missing : .local: no visible binding for global variable
     ‘object’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
Flavor: r-release-osx-x86_64-mavericks