CRAN Package Check Results for Package coloc

Last updated on 2015-07-07 23:47:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3-1 1.74 38.74 40.49 NOTE
r-devel-linux-x86_64-debian-gcc 2.3-1 1.73 38.74 40.47 NOTE
r-devel-linux-x86_64-fedora-clang 2.3-1 82.42 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3-1 78.71 NOTE
r-devel-osx-x86_64-clang 2.3-1 68.00 NOTE
r-devel-windows-ix86+x86_64 2.3-1 7.00 68.00 75.00 NOTE
r-patched-linux-x86_64 2.3-1 1.67 38.22 39.89 NOTE
r-patched-solaris-sparc 2.3-1 461.40 NOTE
r-patched-solaris-x86 2.3-1 108.00 NOTE
r-release-linux-x86_64 2.3-1 1.68 38.91 40.59 NOTE
r-release-osx-x86_64-mavericks 2.3-1 NOTE
r-release-windows-ix86+x86_64 2.3-1 8.00 67.00 75.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3-1 9.00 87.00 96.00 NOTE

Check Details

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    approx.bf.p: no visible global function definition for ‘qnorm’
    coeff.plot: no visible global function definition for ‘polygon’
    coeff.plot: no visible global function definition for ‘abline’
    coeff.plot: no visible global function definition for ‘arrows’
    coeff.plot: no visible global function definition for ‘points’
    coeff.plot: no visible global function definition for ‘segments’
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    coloc.bma: no visible global function definition for ‘as.formula’
    coloc.bma: no visible global function definition for ‘glm’
    coloc.bma: no visible global function definition for ‘coefficients’
    coloc.bma : <anonymous>: no visible global function definition for
     ‘combn’
    coloc.bma: no visible global function definition for ‘vcov’
    coloc.combine: no visible global function definition for ‘var’
    coloc.combine: no visible global function definition for ‘pf’
    coloc.combine: no visible global function definition for ‘pchisq’
    coloc.test: no visible global function definition for ‘coefficients’
    coloc.test: no visible global function definition for ‘vcov’
    coloc.test.summary : findmin: no visible global function definition for
     ‘optimize’
    coloc.test.summary: no visible global function definition for
     ‘integrate’
    coloc.test.summary : pv: no visible global function definition for
     ‘pchisq’
    coloc.test.summary : bf.calc: no visible global function definition for
     ‘integrate’
    credible.interval: no visible global function definition for ‘optimize’
    credible.interval: no visible global function definition for
     ‘integrate’
    extra.plot: no visible global function definition for ‘axis’
    extra.plot: no visible global function definition for ‘box’
    extra.plot: no visible global function definition for ‘abline’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
    pcs.model: no visible global function definition for ‘as.formula’
    pcs.model: no visible global function definition for ‘glm’
    pcs.model: no visible global function definition for ‘coefficients’
    pcs.prepare: no visible global function definition for ‘prcomp’
    prepare.df: no visible global function definition for ‘cor’
    sdY.est: no visible global function definition for ‘lm’
    sdY.est: no visible global function definition for ‘coef’
    p.value,coloc: no visible global function definition for ‘pchisq’
    plot,colocPCs-missing: no visible binding for global variable ‘object’
    plot,colocPCs-missing: no visible global function definition for
     ‘abline’
    Undefined global functions or variables:
     abline arrows as.formula axis box coef coefficients col.summary combn
     cor glm impute.snps integrate lm object optimize pchisq pf points
     polygon prcomp qnorm segments single.snp.tests snp.imputation var
     vcov
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
    plot,colocPCs-missing: no visible binding for global variable ‘object’
    Undefined global functions or variables:
     col.summary impute.snps object single.snp.tests snp.imputation
Flavor: r-devel-osx-x86_64-clang

Version: 2.3-1
Check: R code for possible problems
Result: NOTE
    coloc.abf.snpStats: no visible global function definition for
     ‘single.snp.tests’
    coloc.abf.snpStats: no visible global function definition for
     ‘col.summary’
    fillin: no visible global function definition for ‘col.summary’
    fillin: no visible global function definition for ‘snp.imputation’
    fillin: no visible global function definition for ‘impute.snps’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64