CRAN Package Check Results for Package compareGroups

Last updated on 2015-08-01 21:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.1 2.86 149.90 152.77 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.1 2.76 146.81 149.57 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.1 288.75 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.1 281.37 NOTE
r-devel-osx-x86_64-clang 3.0.1 202.03 OK
r-devel-windows-ix86+x86_64 3.0.1 22.00 241.00 263.00 NOTE
r-patched-linux-x86_64 3.0.1 2.90 151.12 154.02 OK
r-patched-solaris-sparc 3.0.1 1560.70 OK
r-patched-solaris-x86 3.0.1 305.30 OK
r-release-linux-x86_64 3.0.1 3.12 149.62 152.74 OK
r-release-osx-x86_64-mavericks 3.0.1 OK
r-release-windows-ix86+x86_64 3.0.1 21.00 245.00 266.00 OK
r-oldrel-windows-ix86+x86_64 3.0.1 29.00 296.00 325.00 OK

Check Details

Version: 3.0.1
Check: R code for possible problems
Result: NOTE
    Cox.plot: no visible global function definition for ‘dev.new’
    Cox.plot: no visible global function definition for ‘bmp’
    Cox.plot: no visible global function definition for ‘png’
    Cox.plot: no visible global function definition for ‘tiff’
    Cox.plot: no visible global function definition for ‘jpeg’
    Cox.plot: no visible global function definition for ‘pdf’
    Cox.plot: no visible global function definition for ‘plot’
    Cox.plot: no visible global function definition for ‘points’
    Cox.plot: no visible global function definition for ‘title’
    Cox.plot: no visible global function definition for ‘legend’
    Cox.plot: no visible global function definition for ‘dev.off’
    KM.plot: no visible global function definition for ‘dev.new’
    KM.plot: no visible global function definition for ‘bmp’
    KM.plot: no visible global function definition for ‘png’
    KM.plot: no visible global function definition for ‘tiff’
    KM.plot: no visible global function definition for ‘jpeg’
    KM.plot: no visible global function definition for ‘pdf’
    KM.plot: no visible global function definition for ‘plot’
    KM.plot: no visible global function definition for ‘title’
    KM.plot: no visible global function definition for ‘dev.off’
    KMg.plot: no visible global function definition for ‘dev.new’
    KMg.plot: no visible global function definition for ‘bmp’
    KMg.plot: no visible global function definition for ‘png’
    KMg.plot: no visible global function definition for ‘tiff’
    KMg.plot: no visible global function definition for ‘jpeg’
    KMg.plot: no visible global function definition for ‘pdf’
    KMg.plot: no visible global function definition for ‘plot’
    KMg.plot: no visible global function definition for ‘title’
    KMg.plot: no visible global function definition for ‘legend’
    KMg.plot: no visible global function definition for ‘dev.off’
    [.compareGroups: no visible global function definition for ‘as.formula’
    [.compareGroups: no visible global function definition for ‘update’
    bar.plot: no visible global function definition for ‘dev.new’
    bar.plot: no visible global function definition for ‘bmp’
    bar.plot: no visible global function definition for ‘png’
    bar.plot: no visible global function definition for ‘tiff’
    bar.plot: no visible global function definition for ‘jpeg’
    bar.plot: no visible global function definition for ‘pdf’
    bar.plot: no visible global function definition for ‘barplot’
    bar.plot: no visible global function definition for ‘dev.off’
    bar2.plot: no visible global function definition for ‘dev.new’
    bar2.plot: no visible global function definition for ‘bmp’
    bar2.plot: no visible global function definition for ‘png’
    bar2.plot: no visible global function definition for ‘tiff’
    bar2.plot: no visible global function definition for ‘jpeg’
    bar2.plot: no visible global function definition for ‘pdf’
    bar2.plot: no visible global function definition for ‘barplot’
    bar2.plot: no visible global function definition for ‘legend’
    bar2.plot: no visible global function definition for ‘grey.colors’
    bar2.plot: no visible global function definition for ‘dev.off’
    box.plot: no visible global function definition for ‘dev.new’
    box.plot: no visible global function definition for ‘bmp’
    box.plot: no visible global function definition for ‘png’
    box.plot: no visible global function definition for ‘tiff’
    box.plot: no visible global function definition for ‘jpeg’
    box.plot: no visible global function definition for ‘pdf’
    box.plot: no visible global function definition for ‘boxplot’
    box.plot: no visible global function definition for ‘dev.off’
    cGroupsGUI : plots.factor: no visible global function definition for
     ‘barplot’
    cGroupsGUI : plots.factor: no visible global function definition for
     ‘text’
    cGroupsGUI : type.var.function: no visible global function definition
     for ‘shapiro.test’
    cGroupsGUI : plots.uni: no visible global function definition for
     ‘barplot’
    cGroupsGUI : plots.uni: no visible global function definition for
     ‘text’
    cGroupsGUI : plots.bi: no visible global function definition for
     ‘barplot’
    cGroupsGUI : plots.bi: no visible global function definition for
     ‘rainbow’
    cGroupsGUI : plots.bi: no visible global function definition for
     ‘boxplot’
    cGroupsGUI : plaincomma: no visible global function definition for
     ‘read.csv’
    cGroupsGUI : plaincolon: no visible global function definition for
     ‘read.csv2’
    chisq.test2: no visible global function definition for ‘fisher.test’
    chisq.test2: no visible global function definition for ‘chisq.test’
    combn2: no visible global function definition for ‘combn’
    compare.i: no visible global function definition for ‘median’
    compare.i: no visible global function definition for ‘shapiro.test’
    compare.i: no visible global function definition for ‘pchisq’
    compare.i: no visible global function definition for ‘cor’
    compare.i: no visible global function definition for ‘p.adjust’
    compare.i: no visible global function definition for ‘coef’
    compare.i: no visible global function definition for ‘t.test’
    compare.i: no visible global function definition for ‘anova’
    compare.i: no visible global function definition for ‘lm’
    compare.i: no visible global function definition for ‘cor.test’
    compare.i: no visible global function definition for ‘TukeyHSD’
    compare.i: no visible global function definition for ‘aov’
    compare.i: no visible global function definition for ‘kruskal.test’
    compare.i: no visible global function definition for ‘confint’
    compare.i: no visible global function definition for ‘glm’
    compare.i: no visible global function definition for ‘confint.default’
    compareGroups.formula: no visible binding for global variable ‘na.pass’
    compareSNPs: no visible binding for global variable ‘na.pass’
    compareSNPs : <anonymous>: no visible global function definition for
     ‘fisher.test’
    descrip: no visible binding for global variable ‘sd’
    descrip: no visible global function definition for ‘sd’
    descrip: no visible binding for global variable ‘median’
    descrip: no visible binding for global variable ‘quantile’
    descrip: no visible global function definition for ‘median’
    descrip: no visible global function definition for ‘quantile’
    export2csv: no visible global function definition for ‘write.table’
    formula.compareGroups: no visible global function definition for
     ‘formula’
    logrank.pval: no visible global function definition for ‘pchisq’
    missingTable: no visible global function definition for ‘update’
    norm.plot: no visible global function definition for ‘dev.new’
    norm.plot: no visible global function definition for ‘bmp’
    norm.plot: no visible global function definition for ‘png’
    norm.plot: no visible global function definition for ‘tiff’
    norm.plot: no visible global function definition for ‘jpeg’
    norm.plot: no visible global function definition for ‘pdf’
    norm.plot: no visible global function definition for ‘par’
    norm.plot: no visible global function definition for ‘hist’
    norm.plot: no visible global function definition for ‘dnorm’
    norm.plot: no visible global function definition for ‘lines’
    norm.plot: no visible global function definition for ‘mtext’
    norm.plot: no visible global function definition for ‘box’
    norm.plot: no visible global function definition for ‘qqline’
    norm.plot: no visible global function definition for ‘boxplot’
    norm.plot: no visible global function definition for ‘plot’
    norm.plot: no visible global function definition for ‘abline’
    norm.plot: no visible global function definition for ‘shapiro.test’
    norm.plot: no visible global function definition for ‘dev.off’
    plot.compareGroups: no visible global function definition for ‘pdf’
    plot.compareGroups: no visible global function definition for ‘dev.off’
    print.cbind.createTable: no visible global function definition for
     ‘sessionInfo’
    print.createTable: no visible global function definition for
     ‘sessionInfo’
    printTable: no visible global function definition for ‘sessionInfo’
    radiograph: no visible global function definition for ‘read.table’
    report: no visible global function definition for ‘plot’
    simplify.formula: no visible global function definition for
     ‘as.formula’
    table.i: no visible global function definition for ‘sessionInfo’
    update.compareGroups: no visible global function definition for
     ‘formula’
    update.formula2: no visible global function definition for ‘as.formula’
    Undefined global functions or variables:
     TukeyHSD abline anova aov as.formula barplot bmp box boxplot
     chisq.test coef combn confint confint.default cor cor.test dev.new
     dev.off dnorm fisher.test formula glm grey.colors hist jpeg
     kruskal.test legend lines lm median mtext na.pass p.adjust par pchisq
     pdf plot png points qqline quantile rainbow read.csv read.csv2
     read.table sd sessionInfo shapiro.test t.test text tiff title update
     write.table
    Consider adding
     importFrom("grDevices", "bmp", "dev.new", "dev.off", "grey.colors",
     "jpeg", "pdf", "png", "rainbow", "tiff")
     importFrom("graphics", "abline", "barplot", "box", "boxplot", "hist",
     "legend", "lines", "mtext", "par", "plot", "points", "text",
     "title")
     importFrom("stats", "TukeyHSD", "anova", "aov", "as.formula",
     "chisq.test", "coef", "confint", "confint.default", "cor",
     "cor.test", "dnorm", "fisher.test", "formula", "glm",
     "kruskal.test", "lm", "median", "na.pass", "p.adjust",
     "pchisq", "qqline", "quantile", "sd", "shapiro.test",
     "t.test", "update")
     importFrom("utils", "combn", "read.csv", "read.csv2", "read.table",
     "sessionInfo", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64