CRAN Package Check Results for Package compositions

Last updated on 2018-05-22 12:49:07 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.40-1 18.64 113.72 132.36 ERROR
r-devel-linux-x86_64-debian-gcc 1.40-1 12.85 88.73 101.58 ERROR
r-devel-linux-x86_64-fedora-clang 1.40-1 199.49 NOTE
r-devel-linux-x86_64-fedora-gcc 1.40-1 191.64 NOTE
r-devel-windows-ix86+x86_64 1.40-1 39.00 225.00 264.00 NOTE
r-patched-linux-x86_64 1.40-1 17.91 114.29 132.20 ERROR
r-patched-solaris-x86 1.40-1 245.30 NOTE
r-release-linux-x86_64 1.40-1 17.00 114.86 131.86 ERROR
r-release-windows-ix86+x86_64 1.40-1 40.00 307.00 347.00 NOTE
r-release-osx-x86_64 1.40-1 NOTE
r-oldrel-windows-ix86+x86_64 1.40-1 23.00 325.00 348.00 NOTE
r-oldrel-osx-x86_64 1.40-1 NOTE

Check Details

Version: 1.40-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rgl’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.40-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     *.acomp *.rcomp *.rmult *.rplus +.acomp +.rcomp +.rmult +.rplus
     -.acomp -.rcomp -.rmult -.rplus /.acomp /.rcomp /.rmult /.rplus
     MahalanobisDist.aplus MahalanobisDist.rcomp MahalanobisDist.rplus
     R2.default R2.lm acompGOF.test.formula acompGOF.test.list
     balanceBase.aplus balanceBase.rplus barplot.ccomp bit<-.character
     bit<-.numeric cdt.ccomp cdtInv.ccomp groupparts.ccomp idt.ccomp
     idtInv.ccomp mean.ccomp missingProjector.rmult names.ccomp
     names<-.acomp names<-.aplus names<-.ccomp names<-.rcomp names<-.rmult
     names<-.rplus plot.ccomp plot.logratioVariogram split.ccomp
     totals.ccomp var.lm var.mlm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.40-1
Check: R code for possible problems
Result: NOTE
    arrows3D.default: no visible global function definition for ‘texts3d’
    arrows3D.default: no visible global function definition for
     ‘segments3d’
    axis3D: no visible global function definition for ‘bbox3d’
    biplot3D.default: no visible global function definition for ‘points3d’
    biplot3D.default: no visible global function definition for ‘texts3d’
    biplot3D.princomp: no visible global function definition for ‘texts3d’
    biplot3D.princomp: no visible global function definition for ‘par3d’
    coloredBiplot.default: no visible global function definition for
     ‘palette’
    colorsForOutliers1: no visible binding for global variable ‘rainbow’
    colorsForOutliers2: no visible global function definition for ‘rgb’
    gsi.APdivideix : <anonymous>: no visible global function definition for
     ‘combn’
    gsi.APrecursiu: no visible global function definition for ‘write.table’
    gsi.PrinBal: no visible global function definition for ‘write.table’
    gsi.PrinBal: no visible global function definition for ‘read.table’
    gsi.getPlot: no visible global function definition for ‘dev.cur’
    gsi.setPlot: no visible global function definition for ‘dev.cur’
    mix.Read: no visible global function definition for ‘read.table’
    noreplot: no visible global function definition for ‘dev.cur’
    pairwisePlot.default: no visible global function definition for
     ‘methods’
    plot3D.acomp: no visible global function definition for ‘points3d’
    plot3D.acomp: no visible global function definition for ‘lines3d’
    plot3D.acomp: no visible global function definition for ‘texts3d’
    plot3D.acomp: no visible global function definition for ‘rgl.viewpoint’
    plot3D.acomp: no visible global function definition for ‘bbox3d’
    plot3D.default: no visible global function definition for ‘rgl.bbox’
    plot3D.rcomp: no visible global function definition for ‘points3d’
    plot3D.rcomp: no visible global function definition for ‘lines3d’
    plot3D.rcomp: no visible global function definition for ‘texts3d’
    plot3D.rcomp: no visible global function definition for ‘rgl.viewpoint’
    plot3D.rcomp: no visible global function definition for ‘bbox3d’
    plot3D.rmult: no visible global function definition for ‘points3d’
    plot3D.rmult: no visible global function definition for ‘par3d’
    read.geoeas: no visible global function definition for ‘read.table’
    replot: no visible global function definition for ‘dev.cur’
    ternaryAxis: no visible global function definition for
     ‘as.graphicsAnnot’
    tryDebugger: no visible global function definition for ‘menu’
    Undefined global functions or variables:
     as.graphicsAnnot bbox3d combn dev.cur lines3d menu methods palette
     par3d points3d rainbow read.table rgb rgl.bbox rgl.viewpoint
     segments3d texts3d write.table
    Consider adding
     importFrom("grDevices", "as.graphicsAnnot", "dev.cur", "palette",
     "rainbow", "rgb")
     importFrom("utils", "combn", "menu", "methods", "read.table",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.40-1
Check: compiled code
Result: NOTE
    File ‘compositions/libs/compositions.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.40-1
Check: files in ‘vignettes’
Result: NOTE
    Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.40-1
Check: examples
Result: ERROR
    Running examples in ‘compositions-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: R2
    > ### Title: R square
    > ### Aliases: R2 R2.lm R2.default Rsquare
    > ### Keywords: multivariate
    >
    > ### ** Examples
    >
    > data(Orange)
    > R2(lm(circumference~age,data=Orange))
    Error in UseMethod("R2", object) :
     no applicable method for 'R2' applied to an object of class "lm"
    Calls: R2
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64