CRAN Package Check Results for Package covTest

Last updated on 2017-01-23 17:49:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.02 2.39 33.48 35.87 NOTE
r-devel-linux-x86_64-debian-gcc 1.02 2.47 32.81 35.28 NOTE
r-devel-linux-x86_64-fedora-clang 1.02 69.47 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.02 65.29 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.02 52.62 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.02 9.00 66.00 75.00 NOTE
r-patched-linux-x86_64 1.02 2.31 28.91 31.22 NOTE
r-patched-solaris-sparc 1.02 386.80 NOTE
r-patched-solaris-x86 1.02 87.80 NOTE
r-release-linux-x86_64 1.02 2.25 29.13 31.38 NOTE
r-release-osx-x86_64-mavericks 1.02 NOTE
r-release-windows-ix86+x86_64 1.02 18.00 83.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 1.02 18.00 123.00 141.00 NOTE

Check Details

Version: 1.02
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘DESCRIPTION.old’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.02
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.lars.en predict.lars.glm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.02
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for ‘coxph’
    calcz02: no visible global function definition for ‘residuals’
    covTest: no visible global function definition for ‘Surv’
    covTest: no visible global function definition for ‘predict’
    covTest: no visible global function definition for ‘update’
    covTest: no visible global function definition for ‘lsfit’
    covTest: no visible global function definition for ‘pexp’
    covTest: no visible global function definition for ‘pf’
    lars.en: no visible binding for global variable ‘var’
    predict.lars.en: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     Surv coxph lsfit pexp pf predict residuals update var
    Consider adding
     importFrom("stats", "lsfit", "pexp", "pf", "predict", "residuals",
     "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.02
Check: Rd line widths
Result: NOTE
    Rd file 'lars.glm.Rd':
     \usage lines wider than 90 characters:
     lars.glm(x, y, status = NULL, family = c("binomial", "cox"), standardize=TRUE,frac.arclength=.1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.02
Flags: --no-stop-on-test-error
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘DESCRIPTION.old’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.02
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.lars.en predict.lars.glm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.02
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for ‘coxph’
    calcz02: no visible global function definition for ‘residuals’
    covTest: no visible global function definition for ‘Surv’
    covTest: no visible global function definition for ‘predict’
    covTest: no visible global function definition for ‘update’
    covTest: no visible global function definition for ‘lsfit’
    covTest: no visible global function definition for ‘pexp’
    covTest: no visible global function definition for ‘pf’
    lars.en: no visible binding for global variable ‘var’
    predict.lars.en: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     Surv coxph lsfit pexp pf predict residuals update var
    Consider adding
     importFrom("stats", "lsfit", "pexp", "pf", "predict", "residuals",
     "update", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.02
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'lars.glm.Rd':
     \usage lines wider than 90 characters:
     lars.glm(x, y, status = NULL, family = c("binomial", "cox"), standardize=TRUE,frac.arclength=.1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.02
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for 'coxph'
    covTest: no visible global function definition for 'Surv'
Flavor: r-oldrel-windows-ix86+x86_64