CRAN Package Check Results for Package covTest

Last updated on 2015-07-29 08:49:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.02 2.72 32.82 35.54 NOTE
r-devel-linux-x86_64-debian-gcc 1.02 3.41 33.05 36.46 NOTE
r-devel-linux-x86_64-fedora-clang 1.02 72.63 NOTE
r-devel-linux-x86_64-fedora-gcc 1.02 69.83 NOTE
r-devel-osx-x86_64-clang 1.02 61.80 NOTE
r-devel-windows-ix86+x86_64 1.02 7.00 53.00 60.00 NOTE
r-patched-linux-x86_64 1.02 2.56 32.39 34.95 NOTE
r-patched-solaris-sparc 1.02 444.70 NOTE
r-patched-solaris-x86 1.02 102.20 NOTE
r-release-linux-x86_64 1.02 2.90 32.48 35.38 NOTE
r-release-osx-x86_64-mavericks 1.02 NOTE
r-release-windows-ix86+x86_64 1.02 11.00 53.00 64.00 NOTE
r-oldrel-windows-ix86+x86_64 1.02 11.00 64.00 75.00 NOTE

Check Details

Version: 1.02
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘DESCRIPTION.old’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.02
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     predict.lars.en predict.lars.glm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.02
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for ‘coxph’
    calcz02: no visible global function definition for ‘residuals’
    covTest: no visible global function definition for ‘Surv’
    covTest: no visible global function definition for ‘predict’
    covTest: no visible global function definition for ‘update’
    covTest: no visible global function definition for ‘lsfit’
    covTest: no visible global function definition for ‘pexp’
    covTest: no visible global function definition for ‘pf’
    lars.en: no visible binding for global variable ‘var’
    predict.lars.en: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     Surv coxph lsfit pexp pf predict residuals update var
    Consider adding
     importFrom("stats", "lsfit", "pexp", "pf", "predict", "residuals",
     "update", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.02
Check: Rd line widths
Result: NOTE
    Rd file 'lars.glm.Rd':
     \usage lines wider than 90 characters:
     lars.glm(x, y, status = NULL, family = c("binomial", "cox"), standardize=TRUE,frac.arclength=.1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.02
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for ‘coxph’
    covTest: no visible global function definition for ‘Surv’
    Undefined global functions or variables:
     Surv coxph
Flavor: r-devel-osx-x86_64-clang

Version: 1.02
Check: R code for possible problems
Result: NOTE
    calcz02: no visible global function definition for ‘coxph’
    covTest: no visible global function definition for ‘Surv’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64