CRAN Package Check Results for Package coxme

Last updated on 2017-03-22 23:53:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-5 6.66 206.13 212.79 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-5 6.26 208.14 214.40 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-5 422.85 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.2-5 436.77 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.2-5 310.71 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.2-5 23.00 339.00 362.00 NOTE --no-vignettes
r-patched-linux-x86_64 2.2-5 6.38 175.21 181.59 NOTE
r-patched-solaris-sparc 2.2-5 3707.40 NOTE
r-patched-solaris-x86 2.2-5 661.00 NOTE
r-release-linux-x86_64 2.2-5 5.88 176.73 182.62 NOTE
r-release-osx-x86_64-mavericks 2.2-5 NOTE
r-release-windows-ix86+x86_64 2.2-5 24.00 279.00 303.00 NOTE --no-vignettes
r-oldrel-windows-ix86+x86_64 2.2-5 27.00 358.00 385.00 OK --no-vignettes

Check Details

Version: 2.2-5
Check: R code for possible problems
Result: NOTE
    anova.coxme: no visible global function definition for ‘as.formula’
    anova.coxme: no visible global function definition for ‘coef’
    anova.coxme: no visible global function definition for ‘pchisq’
    anova.coxmelist : rfun: no visible global function definition for
     ‘formula’
    anova.coxmelist: no visible global function definition for ‘anova’
    anova.coxmelist : dffun: no visible global function definition for
     ‘coef’
    anova.coxmelist: no visible global function definition for ‘pchisq’
    coxme: no visible global function definition for ‘model.extract’
    coxme: no visible global function definition for ‘model.weights’
    coxme: no visible global function definition for ‘model.offset’
    coxme: no visible global function definition for ‘terms’
    coxme: no visible global function definition for ‘model.matrix’
    coxme : getcmat: no visible global function definition for ‘terms’
    coxme : getcmat: no visible global function definition for
     ‘model.matrix’
    coxme.fit: no visible global function definition for ‘rnorm’
    coxme.fit: no visible global function definition for ‘rchisq’
    coxme.fit: no visible global function definition for ‘var’
    coxmeFull : initialize: no visible binding for global variable ‘var’
    lmekin: no visible global function definition for ‘model.extract’
    lmekin: no visible global function definition for ‘model.weights’
    lmekin: no visible global function definition for ‘model.offset’
    lmekin: no visible global function definition for ‘terms’
    lmekin: no visible global function definition for ‘model.matrix’
    lmekin : getcmat: no visible global function definition for ‘terms’
    lmekin : getcmat: no visible global function definition for
     ‘model.matrix’
    predict.coxme: no visible global function definition for ‘napredict’
    print.coxme: no visible global function definition for ‘naprint’
    print.coxme: no visible global function definition for ‘pchisq’
    print.lmekin: no visible global function definition for ‘naprint’
    print.lmekin: no visible global function definition for ‘pchisq’
    residuals.lmekin: no visible global function definition for ‘naresid’
    Undefined global functions or variables:
     anova as.formula coef formula model.extract model.matrix model.offset
     model.weights napredict naprint naresid pchisq rchisq rnorm terms var
    Consider adding
     importFrom("stats", "anova", "as.formula", "coef", "formula",
     "model.extract", "model.matrix", "model.offset",
     "model.weights", "napredict", "naprint", "naresid",
     "pchisq", "rchisq", "rnorm", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 2.2-5
Check: compiled code
Result: NOTE
    File ‘coxme/libs/coxme.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.2-5
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    anova.coxme: no visible global function definition for ‘as.formula’
    anova.coxme: no visible global function definition for ‘coef’
    anova.coxme: no visible global function definition for ‘pchisq’
    anova.coxmelist : rfun: no visible global function definition for
     ‘formula’
    anova.coxmelist: no visible global function definition for ‘anova’
    anova.coxmelist : dffun: no visible global function definition for
     ‘coef’
    anova.coxmelist: no visible global function definition for ‘pchisq’
    coxme: no visible global function definition for ‘model.extract’
    coxme: no visible global function definition for ‘model.weights’
    coxme: no visible global function definition for ‘model.offset’
    coxme: no visible global function definition for ‘terms’
    coxme: no visible global function definition for ‘model.matrix’
    coxme : getcmat: no visible global function definition for ‘terms’
    coxme : getcmat: no visible global function definition for
     ‘model.matrix’
    coxme.fit: no visible global function definition for ‘rnorm’
    coxme.fit: no visible global function definition for ‘rchisq’
    coxme.fit: no visible global function definition for ‘var’
    coxmeFull : initialize: no visible binding for global variable ‘var’
    lmekin: no visible global function definition for ‘model.extract’
    lmekin: no visible global function definition for ‘model.weights’
    lmekin: no visible global function definition for ‘model.offset’
    lmekin: no visible global function definition for ‘terms’
    lmekin: no visible global function definition for ‘model.matrix’
    lmekin : getcmat: no visible global function definition for ‘terms’
    lmekin : getcmat: no visible global function definition for
     ‘model.matrix’
    predict.coxme: no visible global function definition for ‘napredict’
    print.coxme: no visible global function definition for ‘naprint’
    print.coxme: no visible global function definition for ‘pchisq’
    print.lmekin: no visible global function definition for ‘naprint’
    print.lmekin: no visible global function definition for ‘pchisq’
    residuals.lmekin: no visible global function definition for ‘naresid’
    Undefined global functions or variables:
     anova as.formula coef formula model.extract model.matrix model.offset
     model.weights napredict naprint naresid pchisq rchisq rnorm terms var
    Consider adding
     importFrom("stats", "anova", "as.formula", "coef", "formula",
     "model.extract", "model.matrix", "model.offset",
     "model.weights", "napredict", "naprint", "naresid",
     "pchisq", "rchisq", "rnorm", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.2-5
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘coxme/libs/coxme.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.2-5
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    anova.coxme: no visible global function definition for 'as.formula'
    anova.coxme: no visible global function definition for 'coef'
    anova.coxme: no visible global function definition for 'pchisq'
    anova.coxmelist : rfun: no visible global function definition for
     'formula'
    anova.coxmelist: no visible global function definition for 'anova'
    anova.coxmelist : dffun: no visible global function definition for
     'coef'
    anova.coxmelist: no visible global function definition for 'pchisq'
    coxme: no visible global function definition for 'model.extract'
    coxme: no visible global function definition for 'model.weights'
    coxme: no visible global function definition for 'model.offset'
    coxme: no visible global function definition for 'terms'
    coxme: no visible global function definition for 'model.matrix'
    coxme : getcmat: no visible global function definition for 'terms'
    coxme : getcmat: no visible global function definition for
     'model.matrix'
    coxme.fit: no visible global function definition for 'rnorm'
    coxme.fit: no visible global function definition for 'rchisq'
    coxme.fit: no visible global function definition for 'var'
    coxmeFull : initialize: no visible binding for global variable 'var'
    lmekin: no visible global function definition for 'model.extract'
    lmekin: no visible global function definition for 'model.weights'
    lmekin: no visible global function definition for 'model.offset'
    lmekin: no visible global function definition for 'terms'
    lmekin: no visible global function definition for 'model.matrix'
    lmekin : getcmat: no visible global function definition for 'terms'
    lmekin : getcmat: no visible global function definition for
     'model.matrix'
    predict.coxme: no visible global function definition for 'napredict'
    print.coxme: no visible global function definition for 'naprint'
    print.coxme: no visible global function definition for 'pchisq'
    print.lmekin: no visible global function definition for 'naprint'
    print.lmekin: no visible global function definition for 'pchisq'
    residuals.lmekin: no visible global function definition for 'naresid'
    Undefined global functions or variables:
     anova as.formula coef formula model.extract model.matrix model.offset
     model.weights napredict naprint naresid pchisq rchisq rnorm terms var
    Consider adding
     importFrom("stats", "anova", "as.formula", "coef", "formula",
     "model.extract", "model.matrix", "model.offset",
     "model.weights", "napredict", "naprint", "naresid",
     "pchisq", "rchisq", "rnorm", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64