CRAN Package Check Results for Package data.table

Last updated on 2018-02-24 23:48:51 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.10.4-3 24.14 275.22 299.36 ERROR
r-devel-linux-x86_64-debian-gcc 1.10.4-3 18.61 187.94 206.55 ERROR
r-devel-linux-x86_64-fedora-clang 1.10.4-3 324.70 ERROR
r-devel-linux-x86_64-fedora-gcc 1.10.4-3 317.13 ERROR
r-devel-windows-ix86+x86_64 1.10.4-3 108.00 467.00 575.00 ERROR
r-patched-linux-x86_64 1.10.4-3 27.14 261.39 288.53 ERROR
r-patched-solaris-x86 1.10.4-3 432.20 OK
r-release-linux-x86_64 1.10.4-3 28.69 261.69 290.38 ERROR
r-release-windows-ix86+x86_64 1.10.4-3 72.00 524.00 596.00 OK
r-release-osx-x86_64 1.10.4-3 NOTE
r-oldrel-windows-ix86+x86_64 1.10.4-3 70.00 405.00 475.00 OK
r-oldrel-osx-x86_64 1.10.4-3 OK

Additional issues

rchk valgrind

Check Details

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [190s/221s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     6 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 07:16:11 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [0s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [125s/174s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colMeans, colSums, colnames,
     dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
     intersect, is.unsorted, lapply, lengths, mapply, match, mget,
     order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
     rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
     union, unique, unsplit, which, which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     7 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 18:08:28 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1, 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.10.4-3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GenomicRanges’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [194s/223s]
     Running ‘testthat.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
     Loading required package: parallel
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Tests 1372.3+ not run. If required call library(GenomicRanges) first.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     1 error out of 5908 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 22:03:59 2018. Search tests.Rraw for test number 1373.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [185s/274s]
     Running ‘testthat.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
     Loading required package: parallel
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Tests 1372.3+ not run. If required call library(GenomicRanges) first.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
     Test 1543.3 ran without errors but failed check that x equals y:
     > x = ans1
     A X total.x A.y total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
     > y = ans2
     A X total.x A total.y
     1 e 3 TRUE 9 FALSE
     2 f 8 TRUE 2 FALSE
     3 g 4 TRUE 1 FALSE
     4 h 6 TRUE 8 FALSE
     5 i 7 TRUE 5 FALSE
     6 j 9 TRUE 3 FALSE
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     2 errors out of 5908 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 15:14:17 2018. Search tests.Rraw for test numbers: 1373, 1543.3.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.10.4-3
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [115s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/main.R' failed.
    Last 13 lines of output:
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.037 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.04 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.059 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.06 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.063 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Test 1646.064 Error in length(ans$indices) :
     (converted from warning) type 31 is unimplemented in 'type2str'
     Error: memory exhausted (limit reached?)
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.10.4-3
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [218s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/main.R' failed.
    Last 13 lines of output:
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
     Test 1373 ran without errors but failed check that x equals y:
     > x = grepl("NAM\\(1\\)", out)
     [1] FALSE
     > y = TRUE
     [1] TRUE
     1 element mismatch
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     1 error out of 5751 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Thu Feb 22 08:43:02 2018. Search tests.Rraw for test number 1373.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/2s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [174s/212s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colMeans, colSums, colnames, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
     pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Fri Feb 23 19:12:21 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.10.4-3
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [0s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [175s/216s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     Running /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw
     Loading required package: bit64
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     Loading required package: knitr
     Loading required package: nanotime
     Loading required package: chron
     Loading required package: ggplot2
     Loading required package: plyr
     Loading required package: reshape
    
     Attaching package: 'reshape'
    
     The following objects are masked from 'package:plyr':
    
     rename, round_any
    
     The following object is masked from 'package:data.table':
    
     melt
    
     Loading required package: reshape2
    
     Attaching package: 'reshape2'
    
     The following objects are masked from 'package:reshape':
    
     colsplit, melt, recast
    
     The following objects are masked from 'package:data.table':
    
     dcast, melt
    
     Loading required package: testthat
     Loading required package: hexbin
     Loading required package: fastmatch
     Loading required package: nlme
     Loading required package: GenomicRanges
     Loading required package: stats4
     Loading required package: BiocGenerics
     Loading required package: parallel
    
     Attaching package: 'BiocGenerics'
    
     The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
     The following objects are masked from 'package:bit64':
    
     match, order, rank
    
     The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
     The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, cbind, colMeans, colSums, colnames, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
     pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
     setdiff, sort, table, tapply, union, unique, unsplit, which,
     which.max, which.min
    
     Loading required package: S4Vectors
    
     Attaching package: 'S4Vectors'
    
     The following objects are masked from 'package:reshape':
    
     expand, rename
    
     The following object is masked from 'package:plyr':
    
     rename
    
     The following objects are masked from 'package:data.table':
    
     first, second
    
     The following object is masked from 'package:base':
    
     expand.grid
    
     Loading required package: IRanges
    
     Attaching package: 'IRanges'
    
     The following object is masked from 'package:nlme':
    
     collapse
    
     The following object is masked from 'package:plyr':
    
     desc
    
     The following object is masked from 'package:data.table':
    
     shift
    
     Loading required package: GenomeInfoDb
     Loading required package: xts
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
    
     Attaching package: 'xts'
    
     The following object is masked from 'package:S4Vectors':
    
     first
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     Loading required package: gdata
     gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
    
     gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
    
     Attaching package: 'gdata'
    
     The following objects are masked from 'package:xts':
    
     first, last
    
     The following object is masked from 'package:GenomicRanges':
    
     trim
    
     The following object is masked from 'package:IRanges':
    
     trim
    
     The following objects are masked from 'package:S4Vectors':
    
     first, first<-
    
     The following object is masked from 'package:BiocGenerics':
    
     combine
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:data.table':
    
     first, last
    
     The following object is masked from 'package:stats':
    
     nobs
    
     The following object is masked from 'package:utils':
    
     object.size
    
     The following object is masked from 'package:base':
    
     startsWith
    
     Loading required package: caret
     Loading required package: lattice
     Loading required package: curl
     Loading required package: plm
     Loading required package: Formula
    
     Attaching package: 'plm'
    
     The following object is masked from 'package:data.table':
    
     between
    
     Loading required package: rmarkdown
    
     Attaching package: 'reshape2'
    
     The following objects are masked _by_ 'package:data.table':
    
     dcast, melt
    
    
     Attaching package: 'reshape'
    
     The following objects are masked _by_ 'package:S4Vectors':
    
     expand, rename
    
     The following objects are masked _by_ 'package:plyr':
    
     rename, round_any
    
     The following object is masked _by_ 'package:data.table':
    
     melt
    
     The following objects are masked _by_ 'package:reshape2':
    
     colsplit, melt, recast
    
     Test 167 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 167.2 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
     Test 168.1 Error in (function (file = if (onefile) "Rplots.pdf" else "Rplot%03d.pdf", :
     cannot open file 'Rplots.pdf'
    
    
     Running test id 1696
     Error in eval(exprs[i], envir) :
     5 errors out of 5946 (lastID=1751, endian==little, sizeof(long double)==16, sizeof(pointer)==8) in inst/tests/tests.Rraw on Sat Feb 24 07:10:57 2018. Search tests.Rraw for test numbers: 167, 167.1, 167.2, 168, 168.1.
     Calls: test.data.table -> sys.source -> eval -> eval
     Execution halted
Flavor: r-release-linux-x86_64