CRAN Package Check Results for Package depmixS4

Last updated on 2015-08-02 09:46:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-2 1.97 66.24 68.21 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-2 1.84 67.27 69.11 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-2 142.79 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-2 134.33 NOTE
r-devel-osx-x86_64-clang 1.3-2 110.44 NOTE
r-devel-windows-ix86+x86_64 1.3-2 9.00 142.00 151.00 NOTE
r-patched-linux-x86_64 1.3-2 1.94 66.70 68.64 NOTE
r-patched-solaris-sparc 1.3-2 900.60 NOTE
r-patched-solaris-x86 1.3-2 171.30 NOTE
r-release-linux-x86_64 1.3-2 1.82 65.62 67.43 NOTE
r-release-osx-x86_64-mavericks 1.3-2 NOTE
r-release-windows-ix86+x86_64 1.3-2 12.00 188.00 200.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-2 14.00 152.00 166.00 NOTE

Check Details

Version: 1.3-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3-2
Check: R code for possible problems
Result: NOTE
    GLMresponse,formula: warning in matrix(1, nr = 1, nc = ncol(y)):
     partial argument match of ‘nr’ to ‘nrow’
    GLMresponse,formula: warning in matrix(1, nr = 1, nc = ncol(y)):
     partial argument match of ‘nc’ to ‘ncol’
    dens,MULTINOMresponse: warning in matrix(nr = nr): partial argument
     match of ‘nr’ to ‘nrow’
    getConstraints,mix: warning in matrix(0, nr = 0, nc = npar(object)):
     partial argument match of ‘nr’ to ‘nrow’
    getConstraints,mix: warning in matrix(0, nr = 0, nc = npar(object)):
     partial argument match of ‘nc’ to ‘ncol’
    logDens,MULTINOMresponse: warning in matrix(nr = nr): partial argument
     match of ‘nr’ to ‘nrow’
    summary,depmix: warning in matrix(pars[(ns + 1):(ns^2 + ns)], ns, ns,
     byr = T): partial argument match of ‘byr’ to ‘byrow’
    summary,depmix: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of ‘nr’ to ‘nrow’
    summary,depmix: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of ‘nc’ to ‘ncol’
    summary,depmix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of ‘nr’ to ‘nrow’
    summary,depmix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of ‘nc’ to ‘ncol’
    summary,mix: warning in matrix(, nr = ns, nc = np[j]): partial argument
     match of ‘nr’ to ‘nrow’
    summary,mix: warning in matrix(, nr = ns, nc = np[j]): partial argument
     match of ‘nc’ to ‘ncol’
    summary,mix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of ‘nr’ to ‘nrow’
    summary,mix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of ‘nc’ to ‘ncol’
    GLMresponse: no visible global function definition for ‘gaussian’
    depmix: no visible global function definition for ‘gaussian’
    dm_dmvnorm: no visible global function definition for ‘mahalanobis’
    em.depmix: no visible global function definition for ‘model.matrix’
    mix: no visible global function definition for ‘gaussian’
    multinomial: no visible global function definition for ‘make.link’
    rdirichlet: no visible global function definition for ‘rgamma’
    GLMresponse,formula: no visible global function definition for
     ‘gaussian’
    GLMresponse,formula: no visible global function definition for
     ‘model.matrix’
    GLMresponse,formula: no visible global function definition for
     ‘model.response’
    GLMresponse,formula: no visible global function definition for
     ‘model.frame’
    MVNresponse,formula: no visible global function definition for
     ‘model.matrix’
    MVNresponse,formula: no visible global function definition for
     ‘model.response’
    dens,BINOMresponse: no visible global function definition for ‘dbinom’
    dens,GAMMAresponse: no visible global function definition for ‘dgamma’
    dens,MULTINOMresponse: no visible global function definition for
     ‘dmultinom’
    dens,NORMresponse: no visible global function definition for ‘dnorm’
    dens,POISSONresponse: no visible global function definition for ‘dpois’
    depmix,ANY: no visible global function definition for ‘gaussian’
    fit,GLMresponse: no visible global function definition for ‘glm.fit’
    fit,MVNresponse: no visible global function definition for ‘lm.wfit’
    fit,MVNresponse: no visible global function definition for ‘lm.fit’
    fit,MVNresponse: no visible global function definition for ‘cov.wt’
    fit,MVNresponse: no visible global function definition for ‘cov’
    fit,NORMresponse: no visible global function definition for ‘lm.wfit’
    fit,NORMresponse: no visible global function definition for ‘lm.fit’
    fit,NORMresponse: no visible global function definition for ‘sd’
    fit,mix: no visible global function definition for ‘donlp2Control’
    fit,mix: no visible global function definition for ‘donlp2’
    logDens,BINOMresponse: no visible global function definition for
     ‘dbinom’
    logDens,GAMMAresponse: no visible global function definition for
     ‘dgamma’
    logDens,MULTINOMresponse: no visible global function definition for
     ‘dmultinom’
    logDens,NORMresponse: no visible global function definition for ‘dnorm’
    logDens,POISSONresponse: no visible global function definition for
     ‘dpois’
    mix,ANY: no visible global function definition for ‘gaussian’
    show,llratio: no visible global function definition for ‘pchisq’
    simulate,BINOMresponse: no visible global function definition for
     ‘rbinom’
    simulate,GAMMAresponse: no visible global function definition for
     ‘rgamma’
    simulate,MULTINOMresponse: no visible binding for global variable
     ‘rmultinom’
    simulate,NORMresponse: no visible global function definition for
     ‘rnorm’
    simulate,POISSONresponse: no visible global function definition for
     ‘rpois’
    simulate,transInit: no visible binding for global variable ‘rmultinom’
    transInit,formula: no visible global function definition for
     ‘model.matrix’
    Undefined global functions or variables:
     cov cov.wt dbinom dgamma dmultinom dnorm donlp2 donlp2Control dpois
     gaussian glm.fit lm.fit lm.wfit mahalanobis make.link model.frame
     model.matrix model.response pchisq rbinom rgamma rmultinom rnorm
     rpois sd
    Consider adding
     importFrom("stats", "cov", "cov.wt", "dbinom", "dgamma", "dmultinom",
     "dnorm", "dpois", "gaussian", "glm.fit", "lm.fit",
     "lm.wfit", "mahalanobis", "make.link", "model.frame",
     "model.matrix", "model.response", "pchisq", "rbinom",
     "rgamma", "rmultinom", "rnorm", "rpois", "sd")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.3-2
Check: R code for possible problems
Result: NOTE
    GLMresponse,formula: warning in matrix(1, nr = 1, nc = ncol(y)):
     partial argument match of 'nr' to 'nrow'
    GLMresponse,formula: warning in matrix(1, nr = 1, nc = ncol(y)):
     partial argument match of 'nc' to 'ncol'
    dens,MULTINOMresponse: warning in matrix(nr = nr): partial argument
     match of 'nr' to 'nrow'
    dens,MULTINOMresponse: warning in dmultinom(object@y[i, ], pr = pr[i,
     ]): partial argument match of 'pr' to 'prob'
    getConstraints,mix: warning in matrix(0, nr = 0, nc = npar(object)):
     partial argument match of 'nr' to 'nrow'
    getConstraints,mix: warning in matrix(0, nr = 0, nc = npar(object)):
     partial argument match of 'nc' to 'ncol'
    logDens,MULTINOMresponse: warning in matrix(nr = nr): partial argument
     match of 'nr' to 'nrow'
    logDens,MULTINOMresponse: warning in dmultinom(object@y[i, ], pr =
     pr[i, ]): partial argument match of 'pr' to 'prob'
    summary,depmix: warning in matrix(pars[(ns + 1):(ns^2 + ns)], ns, ns,
     byr = T): partial argument match of 'byr' to 'byrow'
    summary,depmix: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of 'nr' to 'nrow'
    summary,depmix: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of 'nc' to 'ncol'
    summary,depmix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of 'nr' to 'nrow'
    summary,depmix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of 'nc' to 'ncol'
    summary,mix: warning in matrix(, nr = ns, nc = np[j]): partial argument
     match of 'nr' to 'nrow'
    summary,mix: warning in matrix(, nr = ns, nc = np[j]): partial argument
     match of 'nc' to 'ncol'
    summary,mix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of 'nr' to 'nrow'
    summary,mix: warning in matrix(, nr = ns, nc = 0): partial argument
     match of 'nc' to 'ncol'
    fit,mix: no visible global function definition for ‘donlp2Control’
    fit,mix: no visible global function definition for ‘donlp2’
    Undefined global functions or variables:
     donlp2 donlp2Control
Flavor: r-devel-osx-x86_64-clang

Version: 1.3-2
Check: R code for possible problems
Result: NOTE
    GLMresponse,formula : .local: warning in matrix(1, nr = 1, nc =
     ncol(y)): partial argument match of ‘nr’ to ‘nrow’
    GLMresponse,formula : .local: warning in matrix(1, nr = 1, nc =
     ncol(y)): partial argument match of ‘nc’ to ‘ncol’
    dens,MULTINOMresponse : .local: warning in matrix(nr = nr): partial
     argument match of ‘nr’ to ‘nrow’
    dens,MULTINOMresponse : .local: warning in dmultinom(object@y[i, ], pr
     = pr[i, ]): partial argument match of ‘pr’ to ‘prob’
    getConstraints,mix : .local: warning in matrix(0, nr = 0, nc =
     npar(object)): partial argument match of ‘nr’ to ‘nrow’
    getConstraints,mix : .local: warning in matrix(0, nr = 0, nc =
     npar(object)): partial argument match of ‘nc’ to ‘ncol’
    logDens,MULTINOMresponse : .local: warning in matrix(nr = nr): partial
     argument match of ‘nr’ to ‘nrow’
    logDens,MULTINOMresponse : .local: warning in dmultinom(object@y[i, ],
     pr = pr[i, ]): partial argument match of ‘pr’ to ‘prob’
    summary,depmix : .local: warning in matrix(pars[(ns + 1):(ns^2 + ns)],
     ns, ns, byr = T): partial argument match of ‘byr’ to ‘byrow’
    summary,depmix : .local: warning in matrix(, nr = ns, nc = np[j]):
     partial argument match of ‘nr’ to ‘nrow’
    summary,depmix : .local: warning in matrix(, nr = ns, nc = np[j]):
     partial argument match of ‘nc’ to ‘ncol’
    summary,depmix : .local: warning in matrix(, nr = ns, nc = 0): partial
     argument match of ‘nr’ to ‘nrow’
    summary,depmix : .local: warning in matrix(, nr = ns, nc = 0): partial
     argument match of ‘nc’ to ‘ncol’
    summary,mix : .local: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of ‘nr’ to ‘nrow’
    summary,mix : .local: warning in matrix(, nr = ns, nc = np[j]): partial
     argument match of ‘nc’ to ‘ncol’
    summary,mix : .local: warning in matrix(, nr = ns, nc = 0): partial
     argument match of ‘nr’ to ‘nrow’
    summary,mix : .local: warning in matrix(, nr = ns, nc = 0): partial
     argument match of ‘nc’ to ‘ncol’
    fit,mix : .local: no visible global function definition for
     ‘donlp2Control’
    fit,mix : .local: no visible global function definition for ‘donlp2’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64