CRAN Package Check Results for Package diffusionMap

Last updated on 2017-04-30 23:51:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-0 2.34 52.64 54.98 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-0 2.36 51.55 53.91 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-0 117.01 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.1-0 115.26 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.1-0 7.00 79.00 86.00 ERROR
r-patched-linux-x86_64 1.1-0 2.33 51.04 53.38 NOTE
r-patched-solaris-sparc 1.1-0 793.20 NOTE
r-patched-solaris-x86 1.1-0 178.60 NOTE
r-release-linux-x86_64 1.1-0 2.43 51.41 53.84 NOTE
r-release-windows-ix86+x86_64 1.1-0 13.00 78.00 91.00 ERROR
r-release-osx-x86_64 1.1-0 NOTE
r-oldrel-windows-ix86+x86_64 1.1-0 11.00 117.00 128.00 NOTE
r-oldrel-osx-x86_64 1.1-0 NOTE

Check Details

Version: 1.1-0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.dmap print.dmap
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-0
Check: R code for possible problems
Result: NOTE
    adapreg: no visible global function definition for ‘optimize’
    adapreg: no visible global function definition for ‘runif’
    adapreg.m: no visible global function definition for ‘lm’
    epsilonCompute: no visible global function definition for ‘median’
    plot.dmap: no visible global function definition for ‘plot’
    plot.dmap: no visible global function definition for ‘stripchart’
    Undefined global functions or variables:
     lm median optimize plot runif stripchart
    Consider adding
     importFrom("graphics", "plot", "stripchart")
     importFrom("stats", "lm", "median", "optimize", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-0
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.dmap print.dmap
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-0
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    adapreg: no visible global function definition for ‘optimize’
    adapreg: no visible global function definition for ‘runif’
    adapreg.m: no visible global function definition for ‘lm’
    epsilonCompute: no visible global function definition for ‘median’
    plot.dmap: no visible global function definition for ‘plot’
    plot.dmap: no visible global function definition for ‘stripchart’
    Undefined global functions or variables:
     lm median optimize plot runif stripchart
    Consider adding
     importFrom("graphics", "plot", "stripchart")
     importFrom("stats", "lm", "median", "optimize", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-0
Check: examples
Result: ERROR
    Running examples in 'diffusionMap-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: adapreg
    > ### Title: Adaptive Regression
    > ### Aliases: adapreg
    > ### Keywords: multivariate nonparametric
    >
    > ### ** Examples
    >
    > library(scatterplot3d)
    > ## trig function on circle
    > t=seq(-pi,pi,.01)
    > x=cbind(cos(t),sin(t))
    > y = cos(3*t) + rnorm(length(t),0,.1)
    > tcol = topo.colors(32)
    > colvec = floor((y-min(y))/(max(y)-min(y))*32); colvec[colvec==0] = 1
    > scatterplot3d(x[,1],x[,2],y,color=tcol[colvec],pch=20,
    + main="Cosine function supported on circle",angle=55,
    + cex.main=2,col.axis="gray",cex.symbols=2,cex.lab=2,
    + xlab=expression("x"[1]),ylab=expression("x"[2]),zlab="y")
    >
    > D = as.matrix(dist(x))
    > # do 10-fold cross-validation to optimize (epsilon, m):
    > AR = adapreg(D,y, mmax=5,nfolds=2,nrep=2)
    [1] "Doing 2-fold cross-validation"
    [1] "Finding optimal model for epsilon= 0.0438"
    Performing eigendecomposition
    Computing Diffusion Coordinates
    Elapsed time: 0.29 seconds
    [1] "Finding optimal model for epsilon= 0.0709"
    Performing eigendecomposition
    At line 409 of file dsaupd.f
    Fortran runtime error: Actual string length is shorter than the declared one for dummy argument 'which' (0/2)
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-0
Check: examples
Result: ERROR
    Running examples in 'diffusionMap-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: adapreg
    > ### Title: Adaptive Regression
    > ### Aliases: adapreg
    > ### Keywords: multivariate nonparametric
    >
    > ### ** Examples
    >
    > library(scatterplot3d)
    > ## trig function on circle
    > t=seq(-pi,pi,.01)
    > x=cbind(cos(t),sin(t))
    > y = cos(3*t) + rnorm(length(t),0,.1)
    > tcol = topo.colors(32)
    > colvec = floor((y-min(y))/(max(y)-min(y))*32); colvec[colvec==0] = 1
    > scatterplot3d(x[,1],x[,2],y,color=tcol[colvec],pch=20,
    + main="Cosine function supported on circle",angle=55,
    + cex.main=2,col.axis="gray",cex.symbols=2,cex.lab=2,
    + xlab=expression("x"[1]),ylab=expression("x"[2]),zlab="y")
    >
    > D = as.matrix(dist(x))
    > # do 10-fold cross-validation to optimize (epsilon, m):
    > AR = adapreg(D,y, mmax=5,nfolds=2,nrep=2)
    [1] "Doing 2-fold cross-validation"
    [1] "Finding optimal model for epsilon= 0.0438"
    Performing eigendecomposition
    Computing Diffusion Coordinates
    Elapsed time: 0.28 seconds
    [1] "Finding optimal model for epsilon= 0.0709"
    Performing eigendecomposition
    At line 409 of file dsaupd.f
    Fortran runtime error: Actual string length is shorter than the declared one for dummy argument 'which' (0/2)
Flavor: r-release-windows-ix86+x86_64