CRAN Package Check Results for Package diseasemapping

Last updated on 2017-03-29 23:53:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.2 1.40 52.05 53.45 NOTE
r-devel-linux-x86_64-debian-gcc 1.4.2 1.34 52.31 53.66 NOTE
r-devel-linux-x86_64-fedora-clang 1.4.2 115.09 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.4.2 101.73 OK --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.4.2 78.54 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.4.2 4.00 121.00 125.00 OK
r-patched-linux-x86_64 1.4.2 1.33 52.58 53.91 NOTE
r-patched-solaris-sparc 1.4.2 538.80 WARN
r-patched-solaris-x86 1.4.2 123.80 NOTE
r-release-linux-x86_64 1.4.2 1.12 45.73 46.84 NOTE
r-release-osx-x86_64-mavericks 1.4.2 NOTE
r-release-windows-ix86+x86_64 1.4.2 10.00 117.00 127.00 OK
r-oldrel-windows-ix86+x86_64 1.4.2 11.00 295.00 306.00 OK

Check Details

Version: 1.4.2
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.4.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.4.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    xelatex bym;
    This is XeTeX, Version 3.14159265-2.6-0.99996 (TeX Live 2016) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./bym.tex
    LaTeX2e <2017/01/01> patch level 3
    Babel <3.9r> and hyphenation patterns for 83 language(s) loaded.
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/size12.clo))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/color.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-cfg/color.cfg))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/framed/framed.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/alltt.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2016/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/amsmath/amsmath.sty
    For additional information on amsmath, use the `?' option.
    (/usr/local/texlive/2016/texmf-dist/tex/latex/amsmath/amstext.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/caption/caption.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/caption/caption3.sty))
    (/usr/local/texlive/2016/texmf-dist/tex/latex/caption/subcaption.sty)
    (/usr/local/texlive/2016/texmf-dist/tex/latex/upquote/upquote.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/ts1enc.def)))
    No file bym.aux.
    (/usr/local/texlive/2016/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    
    Overfull \hbox (38.1448pt too wide) in paragraph at lines 93--93
    [] []\TU/lmtt/m/n/12 larynxRates[] []=[] []\TU/lmtt/b/n/12 structure[][]\TU/
    lmtt/m/n/12 ([][]\TU/lmtt/b/n/12 c[][]\TU/lmtt/m/n/12 ([][]0[][],[] []0[][],[]
    []0[][],[] []0[][],[] []1e-06[][],[] []6e-06[][],[] []2.3e-05[][],[] []4.5e-05[
    ][],[] []9.9e-05[][],[][]
    
    Overfull \hbox (6.05685pt too wide) in paragraph at lines 94--94
    [] []\TU/lmtt/m/n/12 0.000163[][],[] []0.000243[][],[] []0.000299[][],[]
     []0.000343[][],[] []0.000308[][],[] []0.000291[][],[] []0.000217[][],[][]
    
    Overfull \hbox (24.59679pt too wide) in paragraph at lines 95--95
    [] []\TU/lmtt/m/n/12 0[][],[] []0[][],[] []0[][],[] []1e-06[][],[] []1e-
    06[][],[] []3e-06[][],[] []8e-06[][],[] []1.3e-05[][],[] []2.3e-05[][],[] []3.5
    e-05[][],[] []5.8e-05[][],[][]
    
    Overfull \hbox (12.39285pt too wide) in paragraph at lines 96--96
    [] []\TU/lmtt/m/n/12 6.8e-05[][],[] []7.5e-05[][],[] []5.5e-05[][],[] []
    4.1e-05[][],[] []3e-05[][]),[] [].Names[] []=[] []\TU/lmtt/b/n/12 c[][]\TU/lmtt
    /m/n/12 ([][]"M_10"[][],[] []"M_15"[][],[][]
    
    Overfull \hbox (18.45282pt too wide) in paragraph at lines 97--97
    [] []\TU/lmtt/m/n/12 "M_20"[][],[] []"M_25"[][],[] []"M_30"[][],[] []"M_
    35"[][],[] []"M_40"[][],[] []"M_45"[][],[] []"M_50"[][],[] []"M_55"[][],[] []"M
    _60"[][],[][]
    
    Overfull \hbox (18.45282pt too wide) in paragraph at lines 98--98
    [] []\TU/lmtt/m/n/12 "M_65"[][],[] []"M_70"[][],[] []"M_75"[][],[] []"M_
    80"[][],[] []"M_85"[][],[] []"F_10"[][],[] []"F_15"[][],[] []"F_20"[][],[] []"F
    _25"[][],[][]
    
    Overfull \hbox (18.44083pt too wide) in paragraph at lines 99--99
    [] []\TU/lmtt/m/n/12 "F_30"[][],[] []"F_35"[][],[] []"F_40"[][],[] []"F_
    45"[][],[] []"F_50"[][],[] []"F_55"[][],[] []"F_60"[][],[] []"F_65"[][],[] []"F
    _70"[][],[][]
    
    Overfull \hbox (56.26492pt too wide) in paragraph at lines 115--115
    [][]\TU/lmtt/m/n/12 kentucky[] []=[] []diseasemapping[][]::[][]\TU/lmtt/b/n/12
    getSMR[][]\TU/lmtt/m/n/12 (kentucky, larynxRates, larynx,[] []regionCode[][]=[]
    []"County"[][])[][]
    [1
    xdvipdfmx:fatal: File ended prematurely
    
    
    Output file removed.
    *** Error code 138
    make: Fatal error: Command failed for target `bym.pdf'
    Current working directory /home/ripley/R/packages/tests32/diseasemapping.Rcheck/vign_test/diseasemapping/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/diseasemapping.Rcheck/vign_test/diseasemapping") :
     running 'make' failed
    Execution halted
Flavor: r-patched-solaris-sparc