CRAN Package Check Results for Package dismo

Last updated on 2014-09-01 21:48:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-3 4.61 65.62 70.24 NOTE --no-vignettes
r-devel-linux-x86_64-debian-gcc 0.9-3 5.01 63.15 68.16 NOTE --no-vignettes
r-devel-linux-x86_64-fedora-clang 0.9-3 585.33 NOTE --no-build-vignettes
r-devel-linux-x86_64-fedora-gcc 0.9-3 574.02 NOTE --no-build-vignettes
r-devel-osx-x86_64-clang 0.9-3 398.99 NOTE --no-build-vignettes
r-devel-windows-ix86+x86_64 0.9-3 13.00 111.00 124.00 NOTE --no-vignettes
r-patched-linux-x86_64 0.9-3 4.86 69.18 74.04 NOTE --no-vignettes
r-patched-solaris-sparc 0.9-3 935.00 NOTE --no-vignettes
r-patched-solaris-x86 0.9-3 765.70 NOTE --no-build-vignettes
r-release-linux-ix86 0.9-3 5.88 97.31 103.19 NOTE --no-vignettes
r-release-linux-x86_64 0.9-3 4.70 70.16 74.86 NOTE --no-vignettes
r-release-osx-x86_64-mavericks 0.9-3 ERROR
r-release-osx-x86_64-snowleopard 0.9-3 NOTE
r-release-windows-ix86+x86_64 0.9-3 14.00 183.00 197.00 NOTE --no-vignettes
r-oldrel-windows-ix86+x86_64 0.9-3 18.00 119.00 137.00 NOTE --no-vignettes

Check Details

Version: 0.9-3
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    .GBIFKey: no visible global function definition for
     ‘xmlInternalTreeParse’
    .GBIFKey: no visible global function definition for ‘getNodeSet’
    .GBIFKey: no visible global function definition for ‘xmlGetAttr’
    .biogeomancer: no visible global function definition for
     ‘xmlInternalTreeParse’
    .biogeomancer: no visible global function definition for ‘getNodeSet’
    .biogeomancer: no visible global function definition for ‘xmlSApply’
    .biogeomancer: no visible binding for global variable ‘xmlValue’
    .circularArea: no visible global function definition for ‘gArea’
    .geocode: no visible global function definition for
     ‘xmlInternalTreeParse’
    .geocode: no visible global function definition for ‘xmlValue’
    .geocode: no visible global function definition for ‘getNodeSet’
    .geocode: no visible global function definition for ‘xmlToList’
    .getMeVersion: no visible global function definition for ‘.jnew’
    .getMeVersion: no visible global function definition for ‘.jcall’
    .idw: no visible global function definition for ‘gstat’
    .rJava: no visible global function definition for ‘.jpackage’
    .voronoi: no visible global function definition for ‘deldir’
    .voronoi: no visible global function definition for ‘tile.list’
    .voronoi: no visible global function definition for ‘gUnionCascaded’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘xmlInternalTreeParse’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘getNodeSet’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘xmlSApply’
    gbif : gbifxmlToDataFrame: no visible binding for global variable
     ‘xmlValue’
    gbm.fixed: no visible global function definition for ‘predict.gbm’
    gbm.holdout: no visible global function definition for ‘gbm.perf’
    gbm.holdout: no visible global function definition for ‘gbm.more’
    gbm.holdout: no visible global function definition for ‘predict.gbm’
    gbm.interactions: no visible global function definition for
     ‘predict.gbm’
    gbm.perspec: no visible global function definition for ‘predict.gbm’
    gbm.plot: no visible global function definition for ‘plot.gbm’
    gbm.simplify: no visible global function definition for ‘predict.gbm’
    gbm.step: no visible global function definition for ‘predict.gbm’
    gbm.step: no visible global function definition for ‘gbm.more’
    gmap: no visible global function definition for ‘showWKT’
    voronoi: no visible global function definition for ‘deldir’
    voronoi: no visible global function definition for ‘tile.list’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 0.9-3
Flags: --no-vignettes
Check: data for non-ASCII characters
Result: NOTE
     Note: found 106 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-3
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    .GBIFKey: no visible global function definition for
     ‘xmlInternalTreeParse’
    .GBIFKey: no visible global function definition for ‘getNodeSet’
    .GBIFKey: no visible global function definition for ‘xmlGetAttr’
    .biogeomancer: no visible global function definition for
     ‘xmlInternalTreeParse’
    .biogeomancer: no visible global function definition for ‘getNodeSet’
    .biogeomancer: no visible global function definition for ‘xmlSApply’
    .biogeomancer: no visible binding for global variable ‘xmlValue’
    .circularArea: no visible global function definition for ‘gArea’
    .geocode: no visible global function definition for
     ‘xmlInternalTreeParse’
    .geocode: no visible global function definition for ‘xmlValue’
    .geocode: no visible global function definition for ‘getNodeSet’
    .geocode: no visible global function definition for ‘xmlToList’
    .getMeVersion: no visible global function definition for ‘.jnew’
    .getMeVersion: no visible global function definition for ‘.jcall’
    .idw: no visible global function definition for ‘gstat’
    .rJava: no visible global function definition for ‘.jpackage’
    .voronoi: no visible global function definition for ‘deldir’
    .voronoi: no visible global function definition for ‘tile.list’
    .voronoi: no visible global function definition for ‘gUnionCascaded’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘xmlInternalTreeParse’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘getNodeSet’
    gbif : gbifxmlToDataFrame: no visible global function definition for
     ‘xmlSApply’
    gbif : gbifxmlToDataFrame: no visible binding for global variable
     ‘xmlValue’
    gbm.fixed: no visible global function definition for ‘predict.gbm’
    gbm.holdout: no visible global function definition for ‘gbm.perf’
    gbm.holdout: no visible global function definition for ‘gbm.more’
    gbm.holdout: no visible global function definition for ‘predict.gbm’
    gbm.interactions: no visible global function definition for
     ‘predict.gbm’
    gbm.perspec: no visible global function definition for ‘predict.gbm’
    gbm.plot: no visible global function definition for ‘plot.gbm’
    gbm.simplify: no visible global function definition for ‘predict.gbm’
    gbm.step: no visible global function definition for ‘predict.gbm’
    gbm.step: no visible global function definition for ‘gbm.more’
    gmap: no visible global function definition for ‘showWKT’
    voronoi: no visible global function definition for ‘deldir’
    voronoi: no visible global function definition for ‘tile.list’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.9-3
Flags: --no-build-vignettes
Check: data for non-ASCII characters
Result: NOTE
     Note: found 106 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-x86

Version: 0.9-3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘rgdal’ ‘rgeos’ ‘gstat’ ‘maptools’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-3
Check: R code for possible problems
Result: NOTE
    .circularArea: no visible global function definition for ‘gArea’
    .idw: no visible global function definition for ‘gstat’
    .voronoi: no visible global function definition for ‘gUnionCascaded’
    gmap: no visible global function definition for ‘showWKT’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-3
Check: data for non-ASCII characters
Result: NOTE
     Note: found 106 marked UTF-8 strings
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.9-3
Check: examples
Result: ERROR
    Running examples in ‘dismo-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: InvDistW
    > ### Title: Inverse-distance weighted model
    > ### Aliases: geoIDW geoIDW,SpatialPoints,SpatialPoints-method
    > ### geoIDW,matrix,matrix-method geoIDW,data.frame,data.frame-method
    > ### InvDistWeightModel-class
    > ### Keywords: spatial
    >
    > ### ** Examples
    >
    > r <- raster(system.file("external/rlogo.grd", package="raster"))
    > # presence points
    > p <- matrix(c(17, 42, 85, 70, 19, 53, 26, 84, 84, 46, 48, 85, 4, 95, 48, 54, 66, 74, 50, 48,
    + 28, 73, 38, 56, 43, 29, 63, 22, 46, 45, 7, 60, 46, 34, 14, 51, 70, 31, 39, 26), ncol=2)
    >
    > # absence points
    > a <- matrix(c(30, 23, 5, 5, 31, 33, 91, 63, 60, 88, 93, 97, 65, 68, 85, 97, 35, 32, 29, 55,
    + 3, 8, 19, 71, 49, 36, 69, 41, 20, 28, 18, 9, 5, 9, 25, 71, 8, 32, 46, 60), ncol=2)
    >
    > idw <- geoIDW(p, a)
    Loading required package: gstat
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘gstat’
    Error in .idw(p, a) : you need to first install the "gstat" package
    Calls: geoIDW -> geoIDW -> .idw
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    mean total deviance = 1.006
    mean residual deviance = 0.444
    
    estimated cv deviance = 0.686 ; se = 0.035
    
    training data correlation = 0.796
    cv correlation = 0.575 ; se = 0.033
    
    training data ROC score = 0.965
    cv ROC score = 0.871 ; se = 0.015
    
    elapsed time - 0.47 minutes
    maximum value = 0.52
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'brt.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hanging.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    dismo.Rcheck/vign_test/dismo/vignettes/brt.tex:8: ==> Fatal error occurred, no
     output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard