CRAN Package Check Results for Package diversitree

Last updated on 2016-10-01 03:47:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-8 33.92 68.16 102.07 WARN
r-devel-linux-x86_64-debian-gcc 0.9-8 35.11 64.79 99.90 WARN
r-devel-linux-x86_64-fedora-clang 0.9-8 179.39 WARN
r-devel-linux-x86_64-fedora-gcc 0.9-8 166.72 WARN
r-devel-macos-x86_64-clang 0.9-8 129.86 WARN
r-devel-windows-ix86+x86_64 0.9-8 109.00 118.00 227.00 ERROR
r-patched-linux-x86_64 0.9-8 30.22 62.72 92.93 NOTE
r-patched-solaris-sparc 0.9-8 935.20 NOTE
r-patched-solaris-x86 0.9-8 174.40 NOTE
r-release-linux-x86_64 0.9-8 30.18 62.21 92.38 NOTE
r-release-osx-x86_64-mavericks 0.9-8 NOTE
r-release-windows-ix86+x86_64 0.9-8 104.00 122.00 226.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9-8 182.00 168.00 350.00 OK

Check Details

Version: 0.9-8
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Symbol ‘nz’ is used before it is typed at (1)
     Warning: GNU Extension: Nonstandard type declaration REAL*8 at (1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.9-8
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     libs 4.3Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 0.9-8
Check: R code for possible problems
Result: NOTE
    plot.dtlik.t: no visible global function definition for ‘matplot’
    Undefined global functions or variables:
     matplot
    Consider adding
     importFrom("graphics", "matplot")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.9-8
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'diversitree-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: asr-bisse
    > ### Title: Ancestral State Reconstruction Under BiSSE
    > ### Aliases: asr.bisse asr.musse asr.marginal.bisse asr.marginal.musse
    > ### make.asr.marginal.bisse make.asr.marginal.musse
    > ### Keywords: model
    >
    > ### ** Examples
    >
    > ## Start with a simple tree evolved under a BiSSE with all rates
    > ## asymmetric:
    > pars <- c(.1, .2, .03, .06, .01, .02)
    > set.seed(3)
    > phy <- trees(pars, "bisse", max.taxa=50, max.t=Inf, x0=0)[[1]]
    >
    > ## Here is the true history
    > h <- history.from.sim.discrete(phy, 0:1)
    > plot(h, phy, main="True history")
    >
    > ## BiSSE ancestral state reconstructions under the ML model
    > lik <- make.bisse(phy, phy$tip.state)
    > fit <- find.mle(lik, pars, method="subplex")
    At line 35 of file dcopy.f
    Fortran runtime error: Index '2' of dimension 1 of array 'dy' above upper bound of 1
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-8
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'diversitree-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: asr-bisse
    > ### Title: Ancestral State Reconstruction Under BiSSE
    > ### Aliases: asr.bisse asr.musse asr.marginal.bisse asr.marginal.musse
    > ### make.asr.marginal.bisse make.asr.marginal.musse
    > ### Keywords: model
    >
    > ### ** Examples
    >
    > ## Start with a simple tree evolved under a BiSSE with all rates
    > ## asymmetric:
    > pars <- c(.1, .2, .03, .06, .01, .02)
    > set.seed(3)
    > phy <- trees(pars, "bisse", max.taxa=50, max.t=Inf, x0=0)[[1]]
    >
    > ## Here is the true history
    > h <- history.from.sim.discrete(phy, 0:1)
    > plot(h, phy, main="True history")
    >
    > ## BiSSE ancestral state reconstructions under the ML model
    > lik <- make.bisse(phy, phy$tip.state)
    > fit <- find.mle(lik, pars, method="subplex")
    At line 35 of file dcopy.f
    Fortran runtime error: Index '2' of dimension 1 of array 'dy' above upper bound of 1
Flavor: r-devel-windows-ix86+x86_64