Last updated on 2015-03-03 11:49:15.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9-7 | 26.61 | 60.84 | 87.45 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.9-7 | 32.71 | 60.83 | 93.54 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.9-7 | 174.86 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9-7 | 166.01 | NOTE | |||
| r-devel-osx-x86_64-clang | 0.9-7 | 137.01 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.9-7 | 182.00 | 160.00 | 342.00 | NOTE | |
| r-patched-linux-x86_64 | 0.9-7 | 30.76 | 69.36 | 100.12 | NOTE | |
| r-patched-solaris-sparc | 0.9-7 | 1165.40 | NOTE | |||
| r-patched-solaris-x86 | 0.9-7 | 221.00 | NOTE | |||
| r-release-linux-ix86 | 0.9-7 | 41.17 | 82.58 | 123.74 | NOTE | |
| r-release-linux-x86_64 | 0.9-7 | 30.45 | 70.05 | 100.50 | NOTE | |
| r-release-osx-x86_64-mavericks | 0.9-7 | ERROR | ||||
| r-release-osx-x86_64-snowleopard | 0.9-7 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.9-7 | 171.00 | 149.00 | 320.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 0.9-7 | 105.00 | 151.00 | 256.00 | OK |
Version: 0.9-7
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls in package code:
‘lubridate’ ‘minqa’ ‘numDeriv’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks
Version: 0.9-7
Check: R code for possible problems
Result: NOTE
make.every.so.often: no visible global function definition for ‘now’
make.every.so.often : check: no visible global function definition for
‘now’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64
Version: 0.9-7
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
libs 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-sparc, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard
Version: 0.9-7
Check: examples
Result: ERROR
Running examples in ‘diversitree-Ex.R’ failed
The error most likely occurred in:
> ### Name: make.quasse
> ### Title: Quantitative State Speciation and Extinction Model
> ### Aliases: make.quasse starting.point.quasse
> ### Keywords: models
>
> ### ** Examples
>
> ## Example showing simple integration with two different backends,
> ## plus the splits.
> lambda <- function(x) sigmoid.x(x, 0.1, 0.2, 0, 2.5)
> mu <- function(x) constant.x(x, 0.03)
> char <- make.brownian.with.drift(0, 0.025)
>
> set.seed(1)
> phy <- tree.quasse(c(lambda, mu, char), max.taxa=15, x0=0,
+ single.lineage=FALSE, verbose=TRUE)
+: 3 [1.012]
+: 4 [1.584]
+: 5 [3.616]
+: 6 [6.170]
-: 5 [6.201]
+: 6 [6.927]
+: 7 [7.912]
+: 8 [9.209]
+: 9 [9.463]
+: 10 [9.823]
-: 9 [10.944]
+: 10 [11.295]
+: 11 [11.620]
+: 12 [11.715]
+: 13 [12.604]
+: 14 [12.883]
+: 15 [13.473]
+: 16 [13.773]
>
> nodes <- c("nd13", "nd9", "nd5")
> split.t <- Inf
>
> pars <- c(.1, .2, 0, 2.5, .03, 0, .01)
> pars4 <- unlist(rep(list(pars), 4))
>
> sd <- 1/200
> control.C.1 <- list(dt.max=1/200)
>
> control.R.1 <- list(dt.max=1/200, method="fftR")
> lik.C.1 <- make.quasse(phy, phy$tip.state, sd, sigmoid.x, constant.x, control.C.1)
Error in check.fftC() :
diversitree was built without FFTW support. See Details in ?make.quasse
Calls: make.quasse ... make.branches.quasse -> make.branches.quasse.fftC -> check.fftC
Execution halted
Flavor: r-release-osx-x86_64-mavericks