CRAN Package Check Results for Package dti

Last updated on 2015-07-29 12:47:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2-0.1 12.75 53.66 66.41 NOTE
r-devel-linux-x86_64-debian-gcc 1.2-0.1 14.50 53.22 67.71 NOTE
r-devel-linux-x86_64-fedora-clang 1.2-0.1 125.30 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2-0.1 114.70 NOTE
r-devel-osx-x86_64-clang 1.2-0.1 110.09 NOTE
r-devel-windows-ix86+x86_64 1.2-0.1 57.00 91.00 148.00 NOTE
r-patched-linux-x86_64 1.2-0.1 14.47 53.77 68.24 NOTE
r-patched-solaris-sparc 1.2-0.1 753.20 NOTE
r-patched-solaris-x86 1.2-0.1 168.60 NOTE
r-release-linux-x86_64 1.2-0.1 14.38 53.01 67.40 NOTE
r-release-osx-x86_64-mavericks 1.2-0.1 OK
r-release-windows-ix86+x86_64 1.2-0.1 69.00 91.00 160.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2-0.1 75.00 119.00 194.00 NOTE

Check Details

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    IQRdiff: no visible global function definition for ‘IQR’
    Spatialvar.gauss: no visible global function definition for ‘dnorm’
    Varcor.gauss: no visible global function definition for ‘dnorm’
    aflsigmc: no visible global function definition for ‘density’
    aflsigmc: no visible global function definition for ‘median’
    afsigmc: no visible global function definition for ‘density’
    afsigmc: no visible global function definition for ‘median’
    afsigmc: no visible global function definition for ‘quantile’
    andir.image: no visible global function definition for ‘quantile’
    andir2.image: no visible global function definition for ‘quantile’
    awsgsigma2: no visible global function definition for ‘coefficients’
    awsgsigma2: no visible global function definition for ‘lm’
    awslinsd: no visible global function definition for ‘txtProgressBar’
    awslinsd: no visible global function definition for ‘setTxtProgressBar’
    awslsigmc : IQQ: no visible global function definition for ‘qnorm’
    awslsigmc : IQQ: no visible global function definition for ‘quantile’
    awslsigmc : IQQdiff: no visible global function definition for ‘qnorm’
    awslsigmc: no visible global function definition for ‘nls’
    awslsigmc: no visible global function definition for ‘coef’
    awslsigmc: no visible global function definition for ‘par’
    awslsigmc: no visible global function definition for ‘median’
    awslsigmc: no visible global function definition for ‘grey’
    awslsigmc: no visible global function definition for ‘title’
    awslsigmc: no visible global function definition for ‘density’
    awslsigmc: no visible global function definition for ‘sd’
    awssigmc : IQQ: no visible global function definition for ‘quantile’
    awssigmc : IQQdiff: no visible global function definition for ‘qnorm’
    awssigmc: no visible global function definition for ‘quantile’
    awssigmc: no visible global function definition for ‘density’
    awssigmc: no visible global function definition for ‘median’
    dtiTensJKN: no visible global function definition for ‘qnorm’
    dtilin.smooth: no visible global function definition for ‘par’
    dtilin.smooth: no visible global function definition for ‘quantile’
    dtilin.smooth: no visible global function definition for ‘title’
    dtireg.smooth: no visible global function definition for ‘par’
    dtireg.smooth: no visible global function definition for ‘quantile’
    dtireg.smooth: no visible global function definition for ‘title’
    dwi.smooth.ms.wghts: no visible global function definition for
     ‘quantile’
    dwi.smooth.ms.wghts: no visible global function definition for ‘median’
    dwi.smooth.testprop: no visible global function definition for ‘data’
    dwi.smooth.testprop: no visible global function definition for ‘par’
    dwi.smooth.testprop: no visible global function definition for ‘rchisq’
    dwi.smooth.testprop: no visible global function definition for
     ‘contour’
    getkappas: no visible global function definition for ‘runif’
    getkappas: no visible global function definition for ‘optim’
    getkappas: no visible global function definition for ‘optimize’
    identifyFA: no visible global function definition for ‘identify’
    mcorr: no visible global function definition for ‘optim’
    plotse3wghts: no visible global function definition for ‘heat.colors’
    ptenschi: no visible global function definition for ‘optim’
    readDWIdata: no visible global function definition for ‘txtProgressBar’
    readDWIdata: no visible global function definition for
     ‘setTxtProgressBar’
    setawsdefaults: no visible global function definition for ‘qchisq’
    show3dCdata: no visible global function definition for ‘rainbow’
    show3dData: no visible global function definition for ‘rgb’
    show3dODF: no visible global function definition for ‘rainbow’
    show3dTens: no visible global function definition for ‘heat.colors’
    showFAColorScale: no visible global function definition for ‘data’
    showFAColorScale: no visible global function definition for ‘png’
    showFAColorScale: no visible global function definition for ‘par’
    showFAColorScale: no visible global function definition for ‘axis’
    showFAColorScale: no visible global function definition for ‘text’
    showFAColorScale: no visible global function definition for ‘dev.off’
    showse3wghts: no visible global function definition for ‘heat.colors’
    thcorr3D: no visible global function definition for ‘dnorm’
    dkiTensor,dtiData: no visible binding for global variable ‘pb’
    dtiTensor,dtiData: no visible binding for global variable ‘total’
    dtiTensor,dtiData: no visible global function definition for ‘optim’
    dtiTensor,dtiData: no visible global function definition for ‘quantile’
    dwi.smooth.ms,dtiData: no visible global function definition for
     ‘quantile’
    dwi.smooth.ms,dtiData: no visible global function definition for
     ‘median’
    dwi.smooth,dtiData: no visible global function definition for
     ‘quantile’
    dwi.smooth,dtiData: no visible global function definition for ‘median’
    dwi.smooth,dtiData: no visible global function definition for ‘sd’
    dwiMixtensor,dtiData: no visible global function definition for ‘sd’
    dwiMixtensor,dtiData: no visible global function definition for
     ‘median’
    dwiMixtensor,dtiData: no visible global function definition for
     ‘quantile’
    dwiMixtensor,dtiData: no visible global function definition for ‘data’
    dwiMixtensor,dtiData: no visible binding for global variable ‘icosa3’
    dwiMtCombine,dwiMixtensor-dwiMixtensor: no visible global function
     definition for ‘median’
    dwiSqrtODF,dtiData: no visible global function definition for ‘getD0’
    dwiSqrtODF,dtiData: no visible binding for global variable ‘siq’
    getsdofsb,dtiData: no visible global function definition for ‘quantile’
    getsdofsb,dtiData: no visible global function definition for ‘median’
    plot,dkiIndices: no visible global function definition for ‘grey’
    plot,dtiData: no visible global function definition for ‘lines’
    plot,dtiData: no visible global function definition for ‘par’
    plot,dtiIndices: no visible global function definition for ‘par’
    plot,dtiIndices: no visible binding for global variable
     ‘fa.contrast.enh’
    plot,dtiIndices: no visible global function definition for ‘quantile’
    plot,dtiIndices: no visible global function definition for ‘data’
    plot,dtiIndices: no visible global function definition for ‘col2rgb’
    plot,dtiTensor: no visible global function definition for ‘par’
    plot,dtiTensor: no visible global function definition for ‘quantile’
    plot,dtiTensor: no visible global function definition for ‘title’
    plot,dwiFiber: no visible global function definition for ‘density’
    plot,dwiFiber: no visible global function definition for ‘title’
    plot,dwiMixtensor: no visible global function definition for ‘par’
    plot,dwiMixtensor: no visible global function definition for ‘title’
    plot,dwiMixtensor: no visible global function definition for ‘grey’
    sdpar,dtiData: no visible global function definition for ‘quantile’
    sdpar,dtiData: no visible global function definition for ‘par’
    sdpar,dtiData: no visible global function definition for ‘bw.nrd’
    sdpar,dtiData: no visible global function definition for ‘density’
    sdpar,dtiData: no visible global function definition for ‘lines’
    sdpar,dtiData: no visible global function definition for ‘legend’
    sdpar,dtiData: no visible global function definition for ‘title’
    sdpar,dtiData: no visible global function definition for ‘coefficients’
    sdpar,dtiData: no visible global function definition for ‘lm’
    show3d,dkiTensor: no visible global function definition for ‘data’
    show3d,dkiTensor: no visible binding for global variable ‘icosa0’
    show3d,dkiTensor: no visible binding for global variable ‘icosa1’
    show3d,dkiTensor: no visible binding for global variable ‘icosa2’
    show3d,dkiTensor: no visible binding for global variable ‘icosa3’
    show3d,dkiTensor: no visible binding for global variable ‘icosa4’
    show3d,dkiTensor: no visible global function definition for ‘rgb’
    show3d,dtiData: no visible global function definition for ‘quantile’
    show3d,dtiIndices: no visible global function definition for ‘rgb’
    show3d,dtiTensor: no visible global function definition for ‘data’
    show3d,dtiTensor: no visible global function definition for ‘rgb’
    show3d,dtiTensor: no visible binding for global variable ‘icosa0’
    show3d,dtiTensor: no visible binding for global variable ‘icosa1’
    show3d,dtiTensor: no visible binding for global variable ‘icosa2’
    show3d,dtiTensor: no visible binding for global variable ‘icosa3’
    show3d,dtiTensor: no visible binding for global variable ‘icosa4’
    show3d,dtiTensor: no visible global function definition for ‘quantile’
    show3d,dwiFiber: no visible global function definition for ‘rgb’
    show3d,dwiMixtensor: no visible global function definition for ‘data’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa0’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa1’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa2’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa3’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa4’
    show3d,dwiMixtensor: no visible global function definition for
     ‘quantile’
    show3d,dwiMixtensor: no visible global function definition for
     ‘rainbow’
    show3d,dwiMixtensor: no visible global function definition for ‘rgb’
    show3d,dwiQball: no visible global function definition for ‘data’
    show3d,dwiQball: no visible binding for global variable ‘icosa0’
    show3d,dwiQball: no visible binding for global variable ‘icosa1’
    show3d,dwiQball: no visible binding for global variable ‘icosa2’
    show3d,dwiQball: no visible binding for global variable ‘icosa3’
    show3d,dwiQball: no visible binding for global variable ‘icosa4’
    show3d,dwiQball: no visible global function definition for ‘quantile’
    summary,dkiIndices: no visible global function definition for
     ‘quantile’
    summary,dkiTensor: no visible global function definition for ‘quantile’
    summary,dtiData: no visible global function definition for ‘quantile’
    summary,dtiIndices: no visible global function definition for
     ‘quantile’
    summary,dtiTensor: no visible global function definition for ‘quantile’
    summary,dwiFiber: no visible global function definition for ‘quantile’
    summary,dwiMixtensor: no visible global function definition for
     ‘quantile’
    summary,dwiQball: no visible global function definition for ‘quantile’
    Undefined global functions or variables:
     IQR axis bw.nrd coef coefficients col2rgb contour data density
     dev.off dnorm fa.contrast.enh getD0 grey heat.colors icosa0 icosa1
     icosa2 icosa3 icosa4 identify legend lines lm median nls optim
     optimize par pb png qchisq qnorm quantile rainbow rchisq rgb runif sd
     setTxtProgressBar siq text title total txtProgressBar
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.off", "grey", "heat.colors",
     "png", "rainbow", "rgb")
     importFrom("graphics", "axis", "contour", "identify", "legend",
     "lines", "par", "text", "title")
     importFrom("stats", "IQR", "bw.nrd", "coef", "coefficients", "density",
     "dnorm", "lm", "median", "nls", "optim", "optimize",
     "qchisq", "qnorm", "quantile", "rchisq", "runif", "sd")
     importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    dkiTensor,dtiData: no visible binding for global variable ‘pb’
    dtiTensor,dtiData: no visible binding for global variable ‘total’
    dwiMixtensor,dtiData: no visible binding for global variable ‘icosa3’
    dwiSqrtODF,dtiData: no visible global function definition for ‘getD0’
    dwiSqrtODF,dtiData: no visible binding for global variable ‘siq’
    plot,dtiIndices: no visible binding for global variable
     ‘fa.contrast.enh’
    show3d,dkiTensor: no visible binding for global variable ‘icosa0’
    show3d,dkiTensor: no visible binding for global variable ‘icosa1’
    show3d,dkiTensor: no visible binding for global variable ‘icosa2’
    show3d,dkiTensor: no visible binding for global variable ‘icosa3’
    show3d,dkiTensor: no visible binding for global variable ‘icosa4’
    show3d,dtiTensor: no visible binding for global variable ‘icosa0’
    show3d,dtiTensor: no visible binding for global variable ‘icosa1’
    show3d,dtiTensor: no visible binding for global variable ‘icosa2’
    show3d,dtiTensor: no visible binding for global variable ‘icosa3’
    show3d,dtiTensor: no visible binding for global variable ‘icosa4’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa0’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa1’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa2’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa3’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa4’
    show3d,dwiQball: no visible binding for global variable ‘icosa0’
    show3d,dwiQball: no visible binding for global variable ‘icosa1’
    show3d,dwiQball: no visible binding for global variable ‘icosa2’
    show3d,dwiQball: no visible binding for global variable ‘icosa3’
    show3d,dwiQball: no visible binding for global variable ‘icosa4’
    Undefined global functions or variables:
     fa.contrast.enh getD0 icosa0 icosa1 icosa2 icosa3 icosa4 pb siq total
Flavor: r-devel-osx-x86_64-clang

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    dkiTensor,dtiData : .local: no visible binding for global variable ‘pb’
    dtiTensor,dtiData : .local: no visible binding for global variable
     ‘total’
    dwiMixtensor,dtiData : .local: no visible binding for global variable
     ‘icosa3’
    dwiSqrtODF,dtiData : .local: no visible global function definition for
     ‘getD0’
    dwiSqrtODF,dtiData : .local: no visible binding for global variable
     ‘siq’
    plot,dtiIndices : .local: no visible binding for global variable
     ‘fa.contrast.enh’
    show3d,dkiTensor : .local: no visible binding for global variable
     ‘icosa0’
    show3d,dkiTensor : .local: no visible binding for global variable
     ‘icosa1’
    show3d,dkiTensor : .local: no visible binding for global variable
     ‘icosa2’
    show3d,dkiTensor : .local: no visible binding for global variable
     ‘icosa3’
    show3d,dkiTensor : .local: no visible binding for global variable
     ‘icosa4’
    show3d,dtiTensor : .local: no visible binding for global variable
     ‘icosa0’
    show3d,dtiTensor : .local: no visible binding for global variable
     ‘icosa1’
    show3d,dtiTensor : .local: no visible binding for global variable
     ‘icosa2’
    show3d,dtiTensor : .local: no visible binding for global variable
     ‘icosa3’
    show3d,dtiTensor : .local: no visible binding for global variable
     ‘icosa4’
    show3d,dwiMixtensor : .local: no visible binding for global variable
     ‘icosa0’
    show3d,dwiMixtensor : .local: no visible binding for global variable
     ‘icosa1’
    show3d,dwiMixtensor : .local: no visible binding for global variable
     ‘icosa2’
    show3d,dwiMixtensor : .local: no visible binding for global variable
     ‘icosa3’
    show3d,dwiMixtensor : .local: no visible binding for global variable
     ‘icosa4’
    show3d,dwiQball : .local: no visible binding for global variable
     ‘icosa0’
    show3d,dwiQball : .local: no visible binding for global variable
     ‘icosa1’
    show3d,dwiQball : .local: no visible binding for global variable
     ‘icosa2’
    show3d,dwiQball : .local: no visible binding for global variable
     ‘icosa3’
    show3d,dwiQball : .local: no visible binding for global variable
     ‘icosa4’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64