CRAN Package Check Results for Package dti

Last updated on 2015-07-08 06:47:52.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2-0.1 12.51 50.66 63.17 NOTE
r-devel-linux-x86_64-debian-gcc 1.2-0.1 14.35 51.00 65.34 NOTE
r-devel-linux-x86_64-fedora-clang 1.2-0.1 118.94 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2-0.1 111.22 NOTE
r-devel-osx-x86_64-clang 1.2-0.1 104.17 NOTE
r-devel-windows-ix86+x86_64 1.2-0.1 79.00 93.00 172.00 NOTE
r-patched-linux-x86_64 1.2-0.1 14.86 44.53 59.38 OK
r-patched-solaris-sparc 1.2-0.1 649.10 OK
r-patched-solaris-x86 1.2-0.1 154.20 OK
r-release-linux-x86_64 1.2-0.1 14.38 44.52 58.89 OK
r-release-osx-x86_64-mavericks 1.2-0.1 OK
r-release-windows-ix86+x86_64 1.2-0.1 72.00 76.00 148.00 OK
r-oldrel-windows-ix86+x86_64 1.2-0.1 57.00 127.00 184.00 OK

Check Details

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    IQRdiff: no visible global function definition for ‘IQR’
    Spatialvar.gauss: no visible global function definition for ‘dnorm’
    Varcor.gauss: no visible global function definition for ‘dnorm’
    aflsigmc: no visible global function definition for ‘density’
    aflsigmc: no visible global function definition for ‘median’
    afsigmc: no visible global function definition for ‘density’
    afsigmc: no visible global function definition for ‘median’
    afsigmc: no visible global function definition for ‘quantile’
    andir.image: no visible global function definition for ‘quantile’
    andir2.image: no visible global function definition for ‘quantile’
    awsgsigma2: no visible global function definition for ‘coefficients’
    awsgsigma2: no visible global function definition for ‘lm’
    awslinsd: no visible global function definition for ‘txtProgressBar’
    awslinsd: no visible global function definition for ‘setTxtProgressBar’
    awslsigmc : IQQ: no visible global function definition for ‘qnorm’
    awslsigmc : IQQ: no visible global function definition for ‘quantile’
    awslsigmc : IQQdiff: no visible global function definition for ‘qnorm’
    awslsigmc: no visible global function definition for ‘nls’
    awslsigmc: no visible global function definition for ‘coef’
    awslsigmc: no visible global function definition for ‘par’
    awslsigmc: no visible global function definition for ‘median’
    awslsigmc: no visible global function definition for ‘grey’
    awslsigmc: no visible global function definition for ‘title’
    awslsigmc: no visible global function definition for ‘density’
    awslsigmc: no visible global function definition for ‘sd’
    awssigmc : IQQ: no visible global function definition for ‘quantile’
    awssigmc : IQQdiff: no visible global function definition for ‘qnorm’
    awssigmc: no visible global function definition for ‘quantile’
    awssigmc: no visible global function definition for ‘density’
    awssigmc: no visible global function definition for ‘median’
    dtiTensJKN: no visible global function definition for ‘qnorm’
    dtilin.smooth: no visible global function definition for ‘par’
    dtilin.smooth: no visible global function definition for ‘quantile’
    dtilin.smooth: no visible global function definition for ‘title’
    dtireg.smooth: no visible global function definition for ‘par’
    dtireg.smooth: no visible global function definition for ‘quantile’
    dtireg.smooth: no visible global function definition for ‘title’
    dwi.smooth.ms.wghts: no visible global function definition for
     ‘quantile’
    dwi.smooth.ms.wghts: no visible global function definition for ‘median’
    dwi.smooth.testprop: Error while checking: invalid ‘envir’ argument
    getkappas: no visible global function definition for ‘runif’
    getkappas: no visible global function definition for ‘optim’
    getkappas: no visible global function definition for ‘optimize’
    identifyFA: no visible global function definition for ‘identify’
    mcorr: no visible global function definition for ‘optim’
    plotse3wghts: no visible global function definition for ‘heat.colors’
    ptenschi: no visible global function definition for ‘optim’
    readDWIdata: no visible global function definition for ‘txtProgressBar’
    readDWIdata: no visible global function definition for
     ‘setTxtProgressBar’
    setawsdefaults: no visible global function definition for ‘qchisq’
    show3dCdata: no visible global function definition for ‘rainbow’
    show3dData: no visible global function definition for ‘rgb’
    show3dODF: no visible global function definition for ‘rainbow’
    show3dTens: no visible global function definition for ‘heat.colors’
    showFAColorScale: Error while checking: invalid ‘envir’ argument
    showse3wghts: no visible global function definition for ‘heat.colors’
    thcorr3D: no visible global function definition for ‘dnorm’
    dkiTensor,dtiData: no visible binding for global variable ‘pb’
    dtiTensor,dtiData: no visible binding for global variable ‘total’
    dtiTensor,dtiData: no visible global function definition for ‘optim’
    dtiTensor,dtiData: no visible global function definition for ‘quantile’
    dwi.smooth.ms,dtiData: no visible global function definition for
     ‘quantile’
    dwi.smooth.ms,dtiData: no visible global function definition for
     ‘median’
    dwi.smooth,dtiData: no visible global function definition for
     ‘quantile’
    dwi.smooth,dtiData: no visible global function definition for ‘median’
    dwi.smooth,dtiData: no visible global function definition for ‘sd’
    dwiMixtensor,dtiData: no visible global function definition for ‘sd’
    dwiMixtensor,dtiData: no visible global function definition for
     ‘median’
    dwiMixtensor,dtiData: no visible global function definition for
     ‘quantile’
    dwiMixtensor,dtiData: Error while checking: invalid ‘envir’ argument
    dwiMtCombine,dwiMixtensor-dwiMixtensor: no visible global function
     definition for ‘median’
    dwiSqrtODF,dtiData: no visible global function definition for ‘getD0’
    dwiSqrtODF,dtiData: no visible binding for global variable ‘siq’
    getsdofsb,dtiData: no visible global function definition for ‘quantile’
    getsdofsb,dtiData: no visible global function definition for ‘median’
    plot,dkiIndices: no visible global function definition for ‘grey’
    plot,dtiData: no visible global function definition for ‘lines’
    plot,dtiData: no visible global function definition for ‘par’
    plot,dtiIndices: no visible global function definition for ‘par’
    plot,dtiIndices: no visible binding for global variable
     ‘fa.contrast.enh’
    plot,dtiIndices: no visible global function definition for ‘quantile’
    plot,dtiIndices: Error while checking: invalid ‘envir’ argument
    plot,dtiTensor: no visible global function definition for ‘par’
    plot,dtiTensor: no visible global function definition for ‘quantile’
    plot,dtiTensor: no visible global function definition for ‘title’
    plot,dwiFiber: no visible global function definition for ‘density’
    plot,dwiFiber: no visible global function definition for ‘title’
    plot,dwiMixtensor: no visible global function definition for ‘par’
    plot,dwiMixtensor: no visible global function definition for ‘title’
    plot,dwiMixtensor: no visible global function definition for ‘grey’
    sdpar,dtiData: no visible global function definition for ‘quantile’
    sdpar,dtiData: no visible global function definition for ‘par’
    sdpar,dtiData: no visible global function definition for ‘bw.nrd’
    sdpar,dtiData: no visible global function definition for ‘density’
    sdpar,dtiData: no visible global function definition for ‘lines’
    sdpar,dtiData: no visible global function definition for ‘legend’
    sdpar,dtiData: no visible global function definition for ‘title’
    sdpar,dtiData: no visible global function definition for ‘coefficients’
    sdpar,dtiData: no visible global function definition for ‘lm’
    show3d,dkiTensor: Error while checking: invalid ‘envir’ argument
    show3d,dtiData: no visible global function definition for ‘quantile’
    show3d,dtiIndices: no visible global function definition for ‘rgb’
    show3d,dtiTensor: Error while checking: invalid ‘envir’ argument
    show3d,dwiFiber: no visible global function definition for ‘rgb’
    show3d,dwiMixtensor: Error while checking: invalid ‘envir’ argument
    show3d,dwiQball: Error while checking: invalid ‘envir’ argument
    summary,dkiIndices: no visible global function definition for
     ‘quantile’
    summary,dkiTensor: no visible global function definition for ‘quantile’
    summary,dtiData: no visible global function definition for ‘quantile’
    summary,dtiIndices: no visible global function definition for
     ‘quantile’
    summary,dtiTensor: no visible global function definition for ‘quantile’
    summary,dwiFiber: no visible global function definition for ‘quantile’
    summary,dwiMixtensor: no visible global function definition for
     ‘quantile’
    summary,dwiQball: no visible global function definition for ‘quantile’
    Undefined global functions or variables:
     IQR bw.nrd coef coefficients density dnorm fa.contrast.enh getD0 grey
     heat.colors identify legend lines lm median nls optim optimize par pb
     qchisq qnorm quantile rainbow rgb runif sd setTxtProgressBar siq
     title total txtProgressBar
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    dkiTensor,dtiData: no visible binding for global variable ‘pb’
    dtiTensor,dtiData: no visible binding for global variable ‘total’
    dwiMixtensor,dtiData: no visible binding for global variable ‘icosa3’
    dwiSqrtODF,dtiData: no visible global function definition for ‘getD0’
    dwiSqrtODF,dtiData: no visible binding for global variable ‘siq’
    plot,dtiIndices: no visible binding for global variable
     ‘fa.contrast.enh’
    show3d,dkiTensor: no visible binding for global variable ‘icosa0’
    show3d,dkiTensor: no visible binding for global variable ‘icosa1’
    show3d,dkiTensor: no visible binding for global variable ‘icosa2’
    show3d,dkiTensor: no visible binding for global variable ‘icosa3’
    show3d,dkiTensor: no visible binding for global variable ‘icosa4’
    show3d,dtiTensor: no visible binding for global variable ‘icosa0’
    show3d,dtiTensor: no visible binding for global variable ‘icosa1’
    show3d,dtiTensor: no visible binding for global variable ‘icosa2’
    show3d,dtiTensor: no visible binding for global variable ‘icosa3’
    show3d,dtiTensor: no visible binding for global variable ‘icosa4’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa0’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa1’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa2’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa3’
    show3d,dwiMixtensor: no visible binding for global variable ‘icosa4’
    show3d,dwiQball: no visible binding for global variable ‘icosa0’
    show3d,dwiQball: no visible binding for global variable ‘icosa1’
    show3d,dwiQball: no visible binding for global variable ‘icosa2’
    show3d,dwiQball: no visible binding for global variable ‘icosa3’
    show3d,dwiQball: no visible binding for global variable ‘icosa4’
    Undefined global functions or variables:
     fa.contrast.enh getD0 icosa0 icosa1 icosa2 icosa3 icosa4 pb siq total
Flavor: r-devel-osx-x86_64-clang

Version: 1.2-0.1
Check: R code for possible problems
Result: NOTE
    IQRdiff: no visible global function definition for 'IQR'
    Spatialvar.gauss: no visible global function definition for 'dnorm'
    Varcor.gauss: no visible global function definition for 'dnorm'
    aflsigmc: no visible global function definition for 'density'
    aflsigmc: no visible global function definition for 'median'
    afsigmc: no visible global function definition for 'density'
    afsigmc: no visible global function definition for 'median'
    afsigmc: no visible global function definition for 'quantile'
    andir.image: no visible global function definition for 'quantile'
    andir2.image: no visible global function definition for 'quantile'
    awsgsigma2: no visible global function definition for 'coefficients'
    awsgsigma2: no visible global function definition for 'lm'
    awslinsd: no visible global function definition for 'txtProgressBar'
    awslinsd: no visible global function definition for 'setTxtProgressBar'
    awslsigmc : IQQ: no visible global function definition for 'qnorm'
    awslsigmc : IQQ: no visible global function definition for 'quantile'
    awslsigmc : IQQdiff: no visible global function definition for 'qnorm'
    awslsigmc: no visible global function definition for 'nls'
    awslsigmc: no visible global function definition for 'coef'
    awslsigmc: no visible global function definition for 'par'
    awslsigmc: no visible global function definition for 'median'
    awslsigmc: no visible global function definition for 'grey'
    awslsigmc: no visible global function definition for 'title'
    awslsigmc: no visible global function definition for 'density'
    awslsigmc: no visible global function definition for 'sd'
    awssigmc : IQQ: no visible global function definition for 'quantile'
    awssigmc : IQQdiff: no visible global function definition for 'qnorm'
    awssigmc: no visible global function definition for 'quantile'
    awssigmc: no visible global function definition for 'density'
    awssigmc: no visible global function definition for 'median'
    dtiTensJKN: no visible global function definition for 'qnorm'
    dtilin.smooth: no visible global function definition for 'par'
    dtilin.smooth: no visible global function definition for 'quantile'
    dtilin.smooth: no visible global function definition for 'title'
    dtireg.smooth: no visible global function definition for 'par'
    dtireg.smooth: no visible global function definition for 'quantile'
    dtireg.smooth: no visible global function definition for 'title'
    dwi.smooth.ms.wghts: no visible global function definition for
     'quantile'
    dwi.smooth.ms.wghts: no visible global function definition for 'median'
    dwi.smooth.testprop: no visible global function definition for 'data'
    dwi.smooth.testprop: no visible global function definition for 'par'
    dwi.smooth.testprop: no visible global function definition for 'rchisq'
    dwi.smooth.testprop: no visible global function definition for
     'contour'
    getkappas: no visible global function definition for 'runif'
    getkappas: no visible global function definition for 'optim'
    getkappas: no visible global function definition for 'optimize'
    identifyFA: no visible global function definition for 'identify'
    mcorr: no visible global function definition for 'optim'
    plotse3wghts: no visible global function definition for 'heat.colors'
    ptenschi: no visible global function definition for 'optim'
    readDWIdata: no visible global function definition for 'txtProgressBar'
    readDWIdata: no visible global function definition for
     'setTxtProgressBar'
    setawsdefaults: no visible global function definition for 'qchisq'
    show3dCdata: no visible global function definition for 'rainbow'
    show3dData: no visible global function definition for 'rgb'
    show3dODF: no visible global function definition for 'rainbow'
    show3dTens: no visible global function definition for 'heat.colors'
    showFAColorScale: no visible global function definition for 'data'
    showFAColorScale: no visible global function definition for 'png'
    showFAColorScale: no visible global function definition for 'par'
    showFAColorScale: no visible global function definition for 'axis'
    showFAColorScale: no visible global function definition for 'text'
    showFAColorScale: no visible global function definition for 'dev.off'
    showse3wghts: no visible global function definition for 'heat.colors'
    thcorr3D: no visible global function definition for 'dnorm'
    dkiTensor,dtiData: no visible binding for global variable 'pb'
    dtiTensor,dtiData: no visible binding for global variable 'total'
    dtiTensor,dtiData: no visible global function definition for 'optim'
    dtiTensor,dtiData: no visible global function definition for 'quantile'
    dwi.smooth.ms,dtiData: no visible global function definition for
     'quantile'
    dwi.smooth.ms,dtiData: no visible global function definition for
     'median'
    dwi.smooth,dtiData: no visible global function definition for
     'quantile'
    dwi.smooth,dtiData: no visible global function definition for 'median'
    dwi.smooth,dtiData: no visible global function definition for 'sd'
    dwiMixtensor,dtiData: no visible global function definition for 'sd'
    dwiMixtensor,dtiData: no visible global function definition for
     'median'
    dwiMixtensor,dtiData: no visible global function definition for
     'quantile'
    dwiMixtensor,dtiData: no visible global function definition for 'data'
    dwiMixtensor,dtiData: no visible binding for global variable 'icosa3'
    dwiMtCombine,dwiMixtensor-dwiMixtensor: no visible global function
     definition for 'median'
    dwiSqrtODF,dtiData: no visible global function definition for 'getD0'
    dwiSqrtODF,dtiData: no visible binding for global variable 'siq'
    getsdofsb,dtiData: no visible global function definition for 'quantile'
    getsdofsb,dtiData: no visible global function definition for 'median'
    plot,dkiIndices: no visible global function definition for 'grey'
    plot,dtiData: no visible global function definition for 'lines'
    plot,dtiData: no visible global function definition for 'par'
    plot,dtiIndices: no visible global function definition for 'par'
    plot,dtiIndices: no visible binding for global variable
     'fa.contrast.enh'
    plot,dtiIndices: no visible global function definition for 'quantile'
    plot,dtiIndices: no visible global function definition for 'data'
    plot,dtiIndices: no visible global function definition for 'col2rgb'
    plot,dtiTensor: no visible global function definition for 'par'
    plot,dtiTensor: no visible global function definition for 'quantile'
    plot,dtiTensor: no visible global function definition for 'title'
    plot,dwiFiber: no visible global function definition for 'density'
    plot,dwiFiber: no visible global function definition for 'title'
    plot,dwiMixtensor: no visible global function definition for 'par'
    plot,dwiMixtensor: no visible global function definition for 'title'
    plot,dwiMixtensor: no visible global function definition for 'grey'
    sdpar,dtiData: no visible global function definition for 'quantile'
    sdpar,dtiData: no visible global function definition for 'par'
    sdpar,dtiData: no visible global function definition for 'bw.nrd'
    sdpar,dtiData: no visible global function definition for 'density'
    sdpar,dtiData: no visible global function definition for 'lines'
    sdpar,dtiData: no visible global function definition for 'legend'
    sdpar,dtiData: no visible global function definition for 'title'
    sdpar,dtiData: no visible global function definition for 'coefficients'
    sdpar,dtiData: no visible global function definition for 'lm'
    show3d,dkiTensor: no visible global function definition for 'data'
    show3d,dkiTensor: no visible binding for global variable 'icosa0'
    show3d,dkiTensor: no visible binding for global variable 'icosa1'
    show3d,dkiTensor: no visible binding for global variable 'icosa2'
    show3d,dkiTensor: no visible binding for global variable 'icosa3'
    show3d,dkiTensor: no visible binding for global variable 'icosa4'
    show3d,dkiTensor: no visible global function definition for 'rgb'
    show3d,dtiData: no visible global function definition for 'quantile'
    show3d,dtiIndices: no visible global function definition for 'rgb'
    show3d,dtiTensor: no visible global function definition for 'data'
    show3d,dtiTensor: no visible global function definition for 'rgb'
    show3d,dtiTensor: no visible binding for global variable 'icosa0'
    show3d,dtiTensor: no visible binding for global variable 'icosa1'
    show3d,dtiTensor: no visible binding for global variable 'icosa2'
    show3d,dtiTensor: no visible binding for global variable 'icosa3'
    show3d,dtiTensor: no visible binding for global variable 'icosa4'
    show3d,dtiTensor: no visible global function definition for 'quantile'
    show3d,dwiFiber: no visible global function definition for 'rgb'
    show3d,dwiMixtensor: no visible global function definition for 'data'
    show3d,dwiMixtensor: no visible binding for global variable 'icosa0'
    show3d,dwiMixtensor: no visible binding for global variable 'icosa1'
    show3d,dwiMixtensor: no visible binding for global variable 'icosa2'
    show3d,dwiMixtensor: no visible binding for global variable 'icosa3'
    show3d,dwiMixtensor: no visible binding for global variable 'icosa4'
    show3d,dwiMixtensor: no visible global function definition for
     'quantile'
    show3d,dwiMixtensor: no visible global function definition for
     'rainbow'
    show3d,dwiMixtensor: no visible global function definition for 'rgb'
    show3d,dwiQball: no visible global function definition for 'data'
    show3d,dwiQball: no visible binding for global variable 'icosa0'
    show3d,dwiQball: no visible binding for global variable 'icosa1'
    show3d,dwiQball: no visible binding for global variable 'icosa2'
    show3d,dwiQball: no visible binding for global variable 'icosa3'
    show3d,dwiQball: no visible binding for global variable 'icosa4'
    show3d,dwiQball: no visible global function definition for 'quantile'
    summary,dkiIndices: no visible global function definition for
     'quantile'
    summary,dkiTensor: no visible global function definition for 'quantile'
    summary,dtiData: no visible global function definition for 'quantile'
    summary,dtiIndices: no visible global function definition for
     'quantile'
    summary,dtiTensor: no visible global function definition for 'quantile'
    summary,dwiFiber: no visible global function definition for 'quantile'
    summary,dwiMixtensor: no visible global function definition for
     'quantile'
    summary,dwiQball: no visible global function definition for 'quantile'
    Undefined global functions or variables:
     IQR axis bw.nrd coef coefficients col2rgb contour data density
     dev.off dnorm fa.contrast.enh getD0 grey heat.colors icosa0 icosa1
     icosa2 icosa3 icosa4 identify legend lines lm median nls optim
     optimize par pb png qchisq qnorm quantile rainbow rchisq rgb runif sd
     setTxtProgressBar siq text title total txtProgressBar
Flavor: r-devel-windows-ix86+x86_64