CRAN Package Check Results for Package eggCounts

Last updated on 2016-06-26 11:48:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.0 108.52 218.77 327.29 WARN
r-devel-linux-x86_64-fedora-clang 1.0 337.56 WARN
r-devel-linux-x86_64-fedora-gcc 1.0 584.58 WARN
r-devel-osx-x86_64-clang 1.0 348.83 WARN
r-devel-windows-ix86+x86_64 1.0 7.00 5.00 12.00 WARN
r-patched-linux-x86_64 1.0 109.68 201.82 311.51 WARN
r-patched-solaris-sparc 1.0 1353.90 ERROR
r-patched-solaris-x86 1.0 533.60 WARN
r-release-linux-x86_64 1.0 0.33 1.63 1.96 ERROR
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 245.00 454.00 699.00 WARN
r-oldrel-windows-ix86+x86_64 1.0 17.00 2.00 19.00 WARN

Check Details

Version: 1.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: Deprecated function 'gamma_log'; please replace suffix '_log' with '_lpdf' for density functions or '_lpmf' for mass functions
     Warning: Deprecated function 'bernoulli_log'; please replace suffix '_log' with '_lpdf' for density functions or '_lpmf' for mass functions
     Warning: Deprecated function 'poisson_log'; please replace suffix '_log' with '_lpdf' for density functions or '_lpmf' for mass functions
     Warning: 'loadRcppModules' is deprecated.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 38.9Mb
     sub-directories of 1Mb or more:
     libs 38.6Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
    Warning: 'loadRcppModules' is deprecated.
    Use 'loadModule' instead.
    See help("Deprecated")
    
    A namespace must be able to be loaded with just the base namespace
    loaded: otherwise if the namespace gets loaded by a saved object, the
    session will be unable to start.
    
    Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.0
Check: examples
Result: WARN
    Found the following significant warnings:
    
     Warning: 'loadRcppModules' is deprecated.
    Deprecated functions may be defunct as soon as of the next release of
    R.
    See ?Deprecated.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'loadRcppModules' is deprecated.
Flavors: r-devel-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: running examples for arch ‘i386’
Result: WARN
    Found the following significant warnings:
    
     Warning: 'loadRcppModules' is deprecated.
    Deprecated functions may be defunct as soon as of the next release of
    R.
    See ?Deprecated.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: running examples for arch ‘x64’
Result: WARN
    Found the following significant warnings:
    
     Warning: 'loadRcppModules' is deprecated.
    Deprecated functions may be defunct as soon as of the next release of
    R.
    See ?Deprecated.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: tests
Result: ERROR
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     'loadRcppModules' is deprecated.
     Use 'loadModule' instead.
     See help("Deprecated")
     > library(testthat)
     > # simulate egg counts
     > set.seed(1)
     > count <- simData1s()
     > counts <- simData2s()
     >
     > # test raw counts and calculated epg result same mcmc samples
     > set.seed(1)
     > t1 <- stan2mcmc(fec_stan(count[,"obs"], rawCounts=FALSE, CF=50, zeroInflation = TRUE, nburnin=10,nsamples=1e3,thinning=1))
     NOTE: 'nburnin' seems low.
Flavor: r-patched-solaris-sparc

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘rstan’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-linux-x86_64