CRAN Package Check Results for Package eggCounts

Last updated on 2016-07-28 23:47:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 144.77 234.41 379.18 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 117.35 223.06 340.41 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 157.99 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1 154.42 ERROR
r-devel-osx-x86_64-clang 1.1 434.87 NOTE
r-devel-windows-ix86+x86_64 1.1 328.00 558.00 886.00 NOTE
r-patched-linux-x86_64 1.1 119.38 206.93 326.31 NOTE
r-patched-solaris-sparc 1.1 1297.60 ERROR
r-patched-solaris-x86 1.1 226.90 ERROR
r-release-linux-x86_64 1.1 119.98 205.39 325.37 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 316.00 576.00 892.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 282.00 565.00 847.00 NOTE

Check Details

Version: 1.1
Check: installed package size
Result: NOTE
     installed size is 43.7Mb
     sub-directories of 1Mb or more:
     libs 43.4Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: tests
Result: ERROR
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     mode HPDHigh95
     meanEPG 522.2076 788.9436
     Warning message:
     In if (any(CF < 0) | (ceiling(CF) != floor(CF))) stop("correction factor(s) should be a positive integer", :
     the condition has length > 1 and only the first element will be used
     > expect_that(t1, equals(t2))
     >
     > # test 1-sample model compiles okay
     > t3<-fec_stan(count[,"obs"],rawCounts=FALSE,CF=50,zeroInflation = TRUE,
     + muPrior=list(priorDist = "normal",hyperpars=c(1000,100)),nsamples=1000,
     + nburnin=500,thinning=10,nchain=2,ncore=1,verbose=TRUE)
     Error in stan_model(model_name = paste(model), model_code = code) :
     StanHeaders version is ahead of rstan version; see https://github.com/stan-dev/rstan/wiki/RStan-Transition-Periods
     Calls: fec_stan -> stan_model
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: tests
Result: ERROR
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     rstan_options(auto_write = TRUE)
     options(mc.cores = parallel::detectCores())
     - The compiling time for the first time using non-default priors can be up to 20s.
     > library(testthat)
     > # simulate egg counts
     > set.seed(1)
     > count <- simData1s()
     > counts <- simData2s()
     >
     > # test raw counts and calculated epg result same mcmc samples
     > set.seed(1)
     > t1 <- stan2mcmc(fec_stan(count[,"obs"], rawCounts=FALSE, CF=50, zeroInflation = TRUE, nburnin=10,nsamples=1e3,thinning=1))
     NOTE: 'nburnin' seems low.
Flavor: r-patched-solaris-sparc

Version: 1.1
Check: tests
Result: ERROR
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     Warning message:
     In if (any(CF < 0) | (ceiling(CF) != floor(CF))) stop("correction factor(s) should be a positive integer", :
     the condition has length > 1 and only the first element will be used
     > expect_that(t1, equals(t2))
     >
     > # test 1-sample model compiles okay
     > t3<-fec_stan(count[,"obs"],rawCounts=FALSE,CF=50,zeroInflation = TRUE,
     + muPrior=list(priorDist = "normal",hyperpars=c(1000,100)),nsamples=1000,
     + nburnin=500,thinning=10,nchain=2,ncore=1,verbose=TRUE)
     Error in stan_model(model_name = paste(model), model_code = code) :
     StanHeaders version is ahead of rstan version; see https://github.com/stan-dev/rstan/wiki/RStan-Transition-Periods
     Calls: fec_stan -> stan_model
     Execution halted
Flavor: r-patched-solaris-x86