CRAN Package Check Results for Package eiPack

Last updated on 2015-08-05 08:48:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-7 4.00 33.72 37.72 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-7 3.91 32.95 36.86 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-7 76.85 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-7 68.33 NOTE
r-devel-osx-x86_64-clang 0.1-7 63.56 NOTE
r-devel-windows-ix86+x86_64 0.1-7 22.00 61.00 83.00 NOTE
r-patched-linux-x86_64 0.1-7 3.99 34.40 38.39 NOTE
r-patched-solaris-sparc 0.1-7 455.80 NOTE
r-patched-solaris-x86 0.1-7 101.80 NOTE
r-release-linux-x86_64 0.1-7 4.17 33.80 37.98 NOTE
r-release-osx-x86_64-mavericks 0.1-7 NOTE
r-release-windows-ix86+x86_64 0.1-7 25.00 93.00 118.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-7 23.00 95.00 118.00 NOTE

Check Details

Version: 0.1-7
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘coda’ ‘msm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     density.plot
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of ‘start.alpha’ to ‘start.alphas’
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of ‘tune’ to ‘tune.list’
    BayesMDei: no visible global function definition for ‘model.frame’
    BayesMDei: no visible global function definition for ‘rgamma’
    BayesMDei2: no visible global function definition for ‘model.frame’
    BayesMDei2: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘model.frame’
    BayesMDei3cov: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘rnorm’
    BayesMDei4cov: no visible global function definition for ‘model.frame’
    BayesMDei4cov: no visible global function definition for ‘rgamma’
    BayesMDei4cov: no visible global function definition for ‘rnorm’
    bayes.regress: no visible global function definition for ‘as.formula’
    bayes.regress: no visible global function definition for ‘model.frame’
    bayes.regress: no visible global function definition for
     ‘model.response’
    bayes.regress: no visible global function definition for ‘model.matrix’
    bayes.regress: no visible global function definition for ‘rchisq’
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    bounds: no visible global function definition for ‘model.frame’
    cover.plot: no visible global function definition for ‘par’
    cover.plot: no visible global function definition for ‘is.mcmc’
    cover.plot : quant.fcn: no visible global function definition for
     ‘quantile’
    cover.plot: no visible binding for global variable ‘median’
    cover.plot: no visible global function definition for ‘plot’
    cover.plot: no visible global function definition for ‘segments’
    delta: no visible global function definition for ‘as.formula’
    density.plot: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaMD: no visible binding for global variable ‘density’
    density.plot.lambdaMD: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaMD: no visible global function definition for ‘plot’
    density.plot.lambdaMD: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for ‘par’
    density.plot.lambdaReg: no visible global function definition for
     ‘dnorm’
    density.plot.lambdaReg: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaReg: no visible global function definition for
     ‘plot’
    density.plot.lambdaReg: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for
     ‘abline’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘par’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible binding for global variable
     ‘density’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘plot’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘lines’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘abline’
    ei.reg: no visible global function definition for ‘model.frame’
    ei.reg: no visible global function definition for ‘lm’
    ei.reg.bayes: no visible global function definition for ‘model.frame’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    plot.bounds: no visible global function definition for ‘par’
    plot.bounds: no visible global function definition for ‘plot’
    plot.bounds: no visible global function definition for ‘axis’
    plot.bounds: no visible global function definition for ‘segments’
    plot.bounds: no visible global function definition for ‘text’
    plot.bounds: no visible global function definition for ‘abline’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    rdirichlet: no visible global function definition for ‘rgamma’
    read.betas: no visible global function definition for ‘read.table’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.eiMD: no visible binding for global variable ‘sd’
    summary.eiMD: no visible binding for global variable ‘quantile’
    summary.eiRegBayes: no visible binding for global variable ‘sd’
    summary.eiRegBayes: no visible binding for global variable ‘quantile’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    summary.lambdaRegBayes: no visible binding for global variable
     ‘quantile’
    touch.betas: no visible global function definition for ‘na.omit’
    tuneMD: no visible global function definition for ‘model.frame’
    Undefined global functions or variables:
     abline as.formula as.mcmc axis density dnorm is.mcmc lines lm mcmc
     mcpar median model.frame model.matrix model.response mvrnorm na.omit
     par plot quantile rainbow rchisq read.table rgamma rnorm sd segments
     text
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "axis", "lines", "par", "plot",
     "segments", "text")
     importFrom("stats", "as.formula", "density", "dnorm", "lm", "median",
     "model.frame", "model.matrix", "model.response", "na.omit",
     "quantile", "rchisq", "rgamma", "rnorm", "sd")
     importFrom("utils", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1-7
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'density.plot':
     ‘density.plot’
    
    S3 methods shown with full name in documentation object 'plot.bounds':
     ‘plot.bounds’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of 'start.alpha' to 'start.alphas'
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of 'tune' to 'tune.list'
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    cover.plot: no visible global function definition for ‘is.mcmc’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    Undefined global functions or variables:
     as.mcmc is.mcmc mcmc mcpar mvrnorm
Flavor: r-devel-osx-x86_64-clang

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of ‘start.alpha’ to ‘start.alphas’
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of ‘tune’ to ‘tune.list’
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    cover.plot: no visible global function definition for ‘is.mcmc’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64