CRAN Package Check Results for Package eiPack

Last updated on 2015-07-02 23:47:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-7 3.77 35.48 39.25 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-7 3.98 32.62 36.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-7 74.07 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-7 71.23 NOTE
r-devel-osx-x86_64-clang 0.1-7 62.64 NOTE
r-devel-windows-ix86+x86_64 0.1-7 16.00 60.00 76.00 NOTE
r-patched-linux-x86_64 0.1-7 4.10 33.48 37.58 NOTE
r-patched-solaris-sparc 0.1-7 439.20 NOTE
r-patched-solaris-x86 0.1-7 102.50 NOTE
r-release-linux-x86_64 0.1-7 3.99 33.62 37.61 NOTE
r-release-osx-x86_64-mavericks 0.1-7 NOTE
r-release-windows-ix86+x86_64 0.1-7 16.00 63.00 79.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-7 21.00 74.00 95.00 NOTE

Check Details

Version: 0.1-7
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘coda’ ‘msm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     density.plot
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of ‘start.alpha’ to ‘start.alphas’
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of ‘tune’ to ‘tune.list’
    BayesMDei: no visible global function definition for ‘model.frame’
    BayesMDei: no visible global function definition for ‘rgamma’
    BayesMDei2: no visible global function definition for ‘model.frame’
    BayesMDei2: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘model.frame’
    BayesMDei3cov: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘rnorm’
    BayesMDei4cov: no visible global function definition for ‘model.frame’
    BayesMDei4cov: no visible global function definition for ‘rgamma’
    BayesMDei4cov: no visible global function definition for ‘rnorm’
    bayes.regress: no visible global function definition for ‘as.formula’
    bayes.regress: no visible global function definition for ‘model.frame’
    bayes.regress: no visible global function definition for
     ‘model.response’
    bayes.regress: no visible global function definition for ‘model.matrix’
    bayes.regress: no visible global function definition for ‘rchisq’
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    bounds: no visible global function definition for ‘model.frame’
    cover.plot: no visible global function definition for ‘par’
    cover.plot: no visible global function definition for ‘is.mcmc’
    cover.plot : quant.fcn: no visible global function definition for
     ‘quantile’
    cover.plot: no visible binding for global variable ‘median’
    cover.plot: no visible global function definition for ‘plot’
    cover.plot: no visible global function definition for ‘segments’
    delta: no visible global function definition for ‘as.formula’
    density.plot: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaMD: no visible binding for global variable ‘density’
    density.plot.lambdaMD: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaMD: no visible global function definition for ‘plot’
    density.plot.lambdaMD: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for ‘par’
    density.plot.lambdaReg: no visible global function definition for
     ‘dnorm’
    density.plot.lambdaReg: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaReg: no visible global function definition for
     ‘plot’
    density.plot.lambdaReg: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for
     ‘abline’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘par’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible binding for global variable
     ‘density’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘plot’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘lines’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘abline’
    ei.reg: no visible global function definition for ‘model.frame’
    ei.reg: no visible global function definition for ‘lm’
    ei.reg.bayes: no visible global function definition for ‘model.frame’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    plot.bounds: no visible global function definition for ‘par’
    plot.bounds: no visible global function definition for ‘plot’
    plot.bounds: no visible global function definition for ‘axis’
    plot.bounds: no visible global function definition for ‘segments’
    plot.bounds: no visible global function definition for ‘text’
    plot.bounds: no visible global function definition for ‘abline’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    rdirichlet: no visible global function definition for ‘rgamma’
    read.betas: no visible global function definition for ‘read.table’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.eiMD: no visible binding for global variable ‘sd’
    summary.eiMD: no visible binding for global variable ‘quantile’
    summary.eiRegBayes: no visible binding for global variable ‘sd’
    summary.eiRegBayes: no visible binding for global variable ‘quantile’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    summary.lambdaRegBayes: no visible binding for global variable
     ‘quantile’
    touch.betas: no visible global function definition for ‘na.omit’
    tuneMD: no visible global function definition for ‘model.frame’
    Undefined global functions or variables:
     abline as.formula as.mcmc axis density dnorm is.mcmc lines lm mcmc
     mcpar median model.frame model.matrix model.response mvrnorm na.omit
     par plot quantile rainbow rchisq read.table rgamma rnorm sd segments
     text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1-7
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'density.plot':
     ‘density.plot’
    
    S3 methods shown with full name in documentation object 'plot.bounds':
     ‘plot.bounds’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of ‘start.alpha’ to ‘start.alphas’
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of ‘tune’ to ‘tune.list’
    BayesMDei: no visible global function definition for ‘model.frame’
    BayesMDei: no visible global function definition for ‘rgamma’
    BayesMDei2: no visible global function definition for ‘model.frame’
    BayesMDei2: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘model.frame’
    BayesMDei3cov: no visible global function definition for ‘rgamma’
    BayesMDei3cov: no visible global function definition for ‘rnorm’
    BayesMDei4cov: no visible global function definition for ‘model.frame’
    BayesMDei4cov: no visible global function definition for ‘rgamma’
    BayesMDei4cov: no visible global function definition for ‘rnorm’
    bayes.regress: no visible global function definition for ‘as.formula’
    bayes.regress: no visible global function definition for ‘model.frame’
    bayes.regress: no visible global function definition for
     ‘model.response’
    bayes.regress: no visible global function definition for ‘model.matrix’
    bayes.regress: no visible global function definition for ‘rchisq’
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    bounds: no visible global function definition for ‘model.frame’
    cover.plot: no visible global function definition for ‘par’
    cover.plot: no visible global function definition for ‘is.mcmc’
    cover.plot : quant.fcn: no visible global function definition for
     ‘quantile’
    cover.plot: no visible binding for global variable ‘median’
    cover.plot: no visible global function definition for ‘plot’
    cover.plot: no visible global function definition for ‘segments’
    delta: no visible global function definition for ‘as.formula’
    density.plot: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for ‘par’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaMD: no visible binding for global variable ‘density’
    density.plot.lambdaMD: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaMD: no visible global function definition for ‘plot’
    density.plot.lambdaMD: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for ‘par’
    density.plot.lambdaReg: no visible global function definition for
     ‘dnorm’
    density.plot.lambdaReg: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaReg: no visible global function definition for
     ‘plot’
    density.plot.lambdaReg: no visible global function definition for
     ‘lines’
    density.plot.lambdaReg: no visible global function definition for
     ‘abline’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘par’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible binding for global variable
     ‘density’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘rainbow’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘plot’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘lines’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘abline’
    ei.reg: no visible global function definition for ‘model.frame’
    ei.reg: no visible global function definition for ‘lm’
    ei.reg.bayes: no visible global function definition for ‘model.frame’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    plot.bounds: no visible global function definition for ‘par’
    plot.bounds: no visible global function definition for ‘plot’
    plot.bounds: no visible global function definition for ‘axis’
    plot.bounds: no visible global function definition for ‘segments’
    plot.bounds: no visible global function definition for ‘text’
    plot.bounds: no visible global function definition for ‘abline’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    rdirichlet: no visible global function definition for ‘rgamma’
    read.betas: no visible global function definition for ‘read.table’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.eiMD: no visible binding for global variable ‘sd’
    summary.eiMD: no visible binding for global variable ‘quantile’
    summary.eiRegBayes: no visible binding for global variable ‘sd’
    summary.eiRegBayes: no visible binding for global variable ‘quantile’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    summary.lambdaRegBayes: no visible binding for global variable
     ‘quantile’
    touch.betas: no visible global function definition for ‘na.omit’
    tuneMD: no visible global function definition for ‘model.frame’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of 'start.alpha' to 'start.alphas'
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of 'tune' to 'tune.list'
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    cover.plot: no visible global function definition for ‘is.mcmc’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    Undefined global functions or variables:
     as.mcmc is.mcmc mcmc mcpar mvrnorm
Flavor: r-devel-osx-x86_64-clang

Version: 0.1-7
Check: R code for possible problems
Result: NOTE
    ei.MD.bayes: warning in BayesMDei2(formula, data, total = total,
     lambda1 = lambda1, lambda2 = lambda2, tune.alpha = tune.alpha,
     tune.beta = tune.beta, start.alpha = start.alphas, start.betas =
     start.betas, sample = sample, thin = thin, burnin = burnin, verbose =
     verbose, ret.beta = ret.beta, ret.mcmc = ret.mcmc, usrfun = usrfun):
     partial argument match of ‘start.alpha’ to ‘start.alphas’
    tuneMD: warning in ei.MD.bayes(formula, covariate = covariate, data =
     data, sample = sample, thin = thin, burnin = burnin, tune = tl, ...):
     partial argument match of ‘tune’ to ‘tune.list’
    bayes.regress : truncMVRnorm: no visible global function definition for
     ‘mvrnorm’
    bayes.regress: no visible binding for global variable ‘mvrnorm’
    cover.plot: no visible global function definition for ‘is.mcmc’
    density.plot.lambdaMD: no visible global function definition for
     ‘is.mcmc’
    density.plot.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘is.mcmc’
    lambda.MD: no visible global function definition for ‘mcpar’
    mergeMD: no visible global function definition for ‘mcmc’
    print.eiMD: no visible global function definition for ‘is.mcmc’
    read.betas: no visible global function definition for ‘as.mcmc’
    summary.eiMD: no visible global function definition for ‘is.mcmc’
    summary.lambdaRegBayes: no visible global function definition for
     ‘is.mcmc’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64