CRAN Package Check Results for Package empiricalFDR.DESeq2

Last updated on 2018-01-24 08:48:30 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 13.40 205.37 218.77 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.3 12.61 156.94 169.55 NOTE
r-devel-windows-ix86+x86_64 1.0.3 41.00 202.00 243.00 NOTE
r-patched-linux-x86_64 1.0.3 14.74 213.01 227.75 NOTE
r-patched-solaris-x86 1.0.3 410.60 NOTE
r-release-linux-x86_64 1.0.3 18.00 212.45 230.45 NOTE
r-release-windows-ix86+x86_64 1.0.3 31.00 190.00 221.00 NOTE
r-release-osx-x86_64 1.0.3 ERROR
r-oldrel-windows-ix86+x86_64 1.0.3 28.00 184.00 212.00 NOTE
r-oldrel-osx-x86_64 1.0.3 NOTE

Check Details

Version: 1.0.3
Check: R code for possible problems
Result: NOTE
    empiricalFDR: no visible global function definition for ‘axis’
    empiricalFDR: no visible global function definition for ‘loess’
    empiricalFDR: no visible global function definition for ‘predict’
    empiricalFDR: no visible global function definition for ‘lines’
    empiricalFDR: no visible global function definition for ‘abline’
    fdrBiCurve: no visible global function definition for ‘plot’
    fdrBiCurve: no visible global function definition for ‘axis’
    fdrBiCurve: no visible global function definition for ‘lines’
    fdrBiCurve: no visible global function definition for ‘abline’
    fdrBiCurve: no visible global function definition for ‘legend’
    simulateCounts: no visible global function definition for
     ‘txtProgressBar’
    simulateCounts: no visible global function definition for
     ‘setTxtProgressBar’
    simulateCounts: no visible global function definition for ‘rnorm’
    simulateCounts: no visible global function definition for ‘hist’
    simulateCounts: no visible global function definition for ‘colData’
    Undefined global functions or variables:
     abline axis colData hist legend lines loess plot predict rnorm
     setTxtProgressBar txtProgressBar
    Consider adding
     importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
     "plot")
     importFrom("stats", "loess", "predict", "rnorm")
     importFrom("utils", "setTxtProgressBar", "txtProgressBar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘DESeq2’ ‘GenomicRanges’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64