CRAN Package Check Results for Package ergm

Last updated on 2017-08-19 12:51:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.7.1 17.37 298.31 315.68 ERROR
r-devel-linux-x86_64-debian-gcc 3.7.1 19.40 298.22 317.62 ERROR
r-devel-linux-x86_64-fedora-clang 3.7.1 937.70 NOTE
r-devel-linux-x86_64-fedora-gcc 3.7.1 929.95 NOTE
r-devel-windows-ix86+x86_64 3.7.1 110.00 123.00 233.00 OK --no-examples --no-tests --no-vignettes
r-patched-linux-x86_64 3.7.1 18.74 301.00 319.74 ERROR
r-patched-solaris-x86 3.7.1 1086.50 OK
r-release-linux-x86_64 3.7.1 19.33 299.25 318.59 ERROR
r-release-windows-ix86+x86_64 3.7.1 94.00 177.00 271.00 OK --no-examples --no-tests --no-vignettes
r-release-osx-x86_64 3.7.1 NOTE
r-oldrel-windows-ix86+x86_64 3.7.1 71.00 172.00 243.00 OK --no-examples --no-tests --no-vignettes
r-oldrel-osx-x86_64 3.7.1 NOTE

Check Details

Version: 3.7.1
Check: compiled code
Result: NOTE
    File ‘ergm/libs/ergm.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.7.1
Check: tests
Result: ERROR
     Running ‘constrain_blockdiag.R’ [2s/2s]
     Running ‘constrain_degrees.R’ [3s/3s]
     Running ‘constrain_observed.R’ [2s/2s]
     Running ‘constraint_conflict.R’ [2s/2s]
    Running the tests in ‘tests/constraint_conflict.R’ failed.
    Complete output:
     > # File tests/constraint_conflict.R in package ergm, part of the Statnet suite
     > # of packages for network analysis, http://statnet.org .
     > #
     > # This software is distributed under the GPL-3 license. It is free,
     > # open source, and has the attribution requirements (GPL Section 7) at
     > # http://statnet.org/attribution
     > #
     > # Copyright 2003-2017 Statnet Commons
     > #######################################################################
     > library(ergm)
     Loading required package: statnet.common
    
     Attaching package: 'statnet.common'
    
     The following object is masked from 'package:base':
    
     order
    
     Loading required package: network
     network: Classes for Relational Data
     Version 1.13.0 created on 2015-08-31.
     copyright (c) 2005, Carter T. Butts, University of California-Irvine
     Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Martina Morris, University of Washington
     Skye Bender-deMoll, University of Washington
     For citation information, type citation("network").
     Type help("network-package") to get started.
    
    
     ergm: version 3.7.1, created on 2017-03-20
     Copyright (c) 2017, Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Carter T. Butts, University of California -- Irvine
     Steven M. Goodreau, University of Washington
     Pavel N. Krivitsky, University of Wollongong
     Martina Morris, University of Washington
     with contributions from
     Li Wang
     Kirk Li, University of Washington
     Skye Bender-deMoll, University of Washington
     Based on "statnet" project software (statnet.org).
     For license and citation information see statnet.org/attribution
     or type citation("ergm").
    
     NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
     constriant which distorted the sampled distribution somewhat. In
     addition, Sampson's Monks datasets had mislabeled verteces. See the
     NEWS and the documentation for more details.
    
     > data(florentine)
     >
     > efit <- ergm(flomarriage~edges, constraints=~edges)
     All terms are either offsets or extreme values. No optimization is performed.
     Warning messages:
     1: In 'ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     2: In 'control.san': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     3: In 'control.logLik.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     4: In 'control.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     5: In ergm.checkconstraints.model(model.initial, MHproposal, control$init) :
     The specified model's sample space constraint holds statistic(s) edges constant. They will be ignored.
     >
     > stopifnot(length(warnings())==1)
     Error: length(warnings()) == 1 is not TRUE
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.7.1
Check: tests
Result: ERROR
     Running ‘constrain_blockdiag.R’ [2s/2s]
     Running ‘constrain_degrees.R’ [4s/4s]
     Running ‘constrain_observed.R’ [2s/2s]
     Running ‘constraint_conflict.R’ [1s/1s]
    Running the tests in ‘tests/constraint_conflict.R’ failed.
    Complete output:
     > # File tests/constraint_conflict.R in package ergm, part of the Statnet suite
     > # of packages for network analysis, http://statnet.org .
     > #
     > # This software is distributed under the GPL-3 license. It is free,
     > # open source, and has the attribution requirements (GPL Section 7) at
     > # http://statnet.org/attribution
     > #
     > # Copyright 2003-2017 Statnet Commons
     > #######################################################################
     > library(ergm)
     Loading required package: statnet.common
    
     Attaching package: 'statnet.common'
    
     The following object is masked from 'package:base':
    
     order
    
     Loading required package: network
     network: Classes for Relational Data
     Version 1.13.0 created on 2015-08-31.
     copyright (c) 2005, Carter T. Butts, University of California-Irvine
     Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Martina Morris, University of Washington
     Skye Bender-deMoll, University of Washington
     For citation information, type citation("network").
     Type help("network-package") to get started.
    
    
     ergm: version 3.7.1, created on 2017-03-20
     Copyright (c) 2017, Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Carter T. Butts, University of California -- Irvine
     Steven M. Goodreau, University of Washington
     Pavel N. Krivitsky, University of Wollongong
     Martina Morris, University of Washington
     with contributions from
     Li Wang
     Kirk Li, University of Washington
     Skye Bender-deMoll, University of Washington
     Based on "statnet" project software (statnet.org).
     For license and citation information see statnet.org/attribution
     or type citation("ergm").
    
     NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
     constriant which distorted the sampled distribution somewhat. In
     addition, Sampson's Monks datasets had mislabeled verteces. See the
     NEWS and the documentation for more details.
    
     > data(florentine)
     >
     > efit <- ergm(flomarriage~edges, constraints=~edges)
     All terms are either offsets or extreme values. No optimization is performed.
     Warning messages:
     1: In 'ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     2: In 'control.san': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     3: In 'control.logLik.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     4: In 'control.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     5: In ergm.checkconstraints.model(model.initial, MHproposal, control$init) :
     The specified model's sample space constraint holds statistic(s) edges constant. They will be ignored.
     >
     > stopifnot(length(warnings())==1)
     Error: length(warnings()) == 1 is not TRUE
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.7.1
Check: tests
Result: ERROR
     Running ‘constrain_blockdiag.R’ [2s/2s]
     Running ‘constrain_degrees.R’ [3s/3s]
     Running ‘constrain_observed.R’ [2s/2s]
     Running ‘constraint_conflict.R’ [1s/1s]
    Running the tests in ‘tests/constraint_conflict.R’ failed.
    Complete output:
     > # File tests/constraint_conflict.R in package ergm, part of the Statnet suite
     > # of packages for network analysis, http://statnet.org .
     > #
     > # This software is distributed under the GPL-3 license. It is free,
     > # open source, and has the attribution requirements (GPL Section 7) at
     > # http://statnet.org/attribution
     > #
     > # Copyright 2003-2017 Statnet Commons
     > #######################################################################
     > library(ergm)
     Loading required package: statnet.common
    
     Attaching package: 'statnet.common'
    
     The following object is masked from 'package:base':
    
     order
    
     Loading required package: network
     network: Classes for Relational Data
     Version 1.13.0 created on 2015-08-31.
     copyright (c) 2005, Carter T. Butts, University of California-Irvine
     Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Martina Morris, University of Washington
     Skye Bender-deMoll, University of Washington
     For citation information, type citation("network").
     Type help("network-package") to get started.
    
    
     ergm: version 3.7.1, created on 2017-03-20
     Copyright (c) 2017, Mark S. Handcock, University of California -- Los Angeles
     David R. Hunter, Penn State University
     Carter T. Butts, University of California -- Irvine
     Steven M. Goodreau, University of Washington
     Pavel N. Krivitsky, University of Wollongong
     Martina Morris, University of Washington
     with contributions from
     Li Wang
     Kirk Li, University of Washington
     Skye Bender-deMoll, University of Washington
     Based on "statnet" project software (statnet.org).
     For license and citation information see statnet.org/attribution
     or type citation("ergm").
    
     NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
     constriant which distorted the sampled distribution somewhat. In
     addition, Sampson's Monks datasets had mislabeled verteces. See the
     NEWS and the documentation for more details.
    
     > data(florentine)
     >
     > efit <- ergm(flomarriage~edges, constraints=~edges)
     All terms are either offsets or extreme values. No optimization is performed.
     Warning messages:
     1: In 'ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     2: In 'control.san': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     3: In 'control.logLik.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     4: In 'control.ergm': Autodetection of acceptable control parameter generators and of the calling function name has been deprecated and will be removed in a future version. They must be set explicitly.
     5: In ergm.checkconstraints.model(model.initial, MHproposal, control$init) :
     The specified model's sample space constraint holds statistic(s) edges constant. They will be ignored.
     >
     > stopifnot(length(warnings())==1)
     Error: length(warnings()) == 1 is not TRUE
     Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.7.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Rmpi’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 3.7.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    samplk2 (samplk) Longitudinal networks of positive affection
     within a monastery as a "network" object
    samplk3 (samplk) Longitudinal networks of positive affection
     within a monastery as a "network" object
    
    Error in ergm.MCMLE(init, nw, model, initialfit = (initialfit <- NULL), :
     Number of edges in a simulated network exceeds that in the observed by a factor of more than 20. This is a strong indicator of model degeneracy or a very poor starting parameter configuration. If you are reasonably certain that neither of these is the case, increase the MCMLE.density.guard control.ergm() parameter.
    Loading required namespace: latticeExtra
    Warning in formals(fun) : argument is not a function
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'ergm.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `comment.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.6 \usepackage
     {color}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64