CRAN Package Check Results for Package expands

Last updated on 2017-11-25 09:49:25 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.0 4.42 556.70 561.12 OK
r-devel-linux-x86_64-debian-gcc 2.0.0 3.21 463.33 466.54 OK
r-devel-linux-x86_64-fedora-clang 2.0.0 436.62 OK
r-devel-linux-x86_64-fedora-gcc 2.0.0 450.55 OK
r-devel-windows-ix86+x86_64 2.0.0 9.00 87.00 96.00 OK --no-vignettes
r-patched-linux-x86_64 2.0.0 4.17 573.21 577.38 OK
r-patched-solaris-x86 2.0.0 482.50 OK
r-release-linux-x86_64 2.0.0 4.30 553.79 558.09 OK
r-release-windows-ix86+x86_64 2.0.0 8.00 98.00 106.00 OK --no-vignettes
r-release-osx-x86_64 2.0.0 OK
r-oldrel-windows-ix86+x86_64 2.0.0 8.00 93.00 101.00 OK --no-vignettes
r-oldrel-osx-x86_64 2.0.0 ERROR

Check Details

Version: 2.0.0
Check: examples
Result: ERROR
    Running examples in ‘expands-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cellfrequency_pdf
    > ### Title: Computes the probability distribution of cellular frequencies
    > ### for a single mutation.
    > ### Aliases: cellfrequency_pdf
    >
    > ### ** Examples
    >
    > freq=seq(0.1,1.0,by=0.01);
    > cfd=cellfrequency_pdf(af=0.26,cnv=1.95,pnb=0,freq=freq, max_PM=6)
    Error in .jcall("core.utils.Common", "V", "setALLOWED_FREQUENCIES", .jarray(as.double(freq))) :
     RcallMethod: cannot determine object class
    Calls: cellfrequency_pdf -> .jcall -> .External
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 2.0.0
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘expands.Rnw’
     ...
    + all))
    
    > SPs = clusterCellFrequencies(cfd$densities[toUseIdx,
    + ], precision)
    [1] "Clustering 0 probability distributions..."
    [1] "Clustering agglomeration method: average"
    
     When sourcing ‘expands.R’:
    Error: object must be a numeric matrix
    Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 2.0.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Error: processing vignette 'expands.Rnw' failed with diagnostics:
     chunk 5
    Error in .local(object, ...) : object must be a numeric matrix
    
    Execution halted
Flavor: r-oldrel-osx-x86_64