CRAN Package Check Results for Package fastcox

Last updated on 2017-02-28 12:49:15.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 3.46 32.25 35.71 WARN
r-devel-linux-x86_64-debian-gcc 1.1.1 3.62 32.39 36.00 WARN
r-devel-linux-x86_64-fedora-clang 1.1.1 80.93 WARN --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.1.1 79.83 WARN --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.1.1 61.68 WARN --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.1.1 18.00 146.00 164.00 WARN
r-patched-linux-x86_64 1.1.1 3.45 29.83 33.28 NOTE
r-patched-solaris-sparc 1.1.1 415.40 NOTE
r-patched-solaris-x86 1.1.1 79.30 NOTE
r-release-linux-x86_64 1.1.1 3.38 28.80 32.18 NOTE
r-release-osx-x86_64-mavericks 1.1.1 WARN
r-release-windows-ix86+x86_64 1.1.1 27.00 85.00 112.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.1 18.00 96.00 114.00 OK

Memtest notes: valgrind

Check Details

Version: 1.1.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Different type kinds at (1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.1
Check: R code for possible problems
Result: NOTE
    cv.cocktail: no visible global function definition for ‘predict’
    cv.survpath: no visible global function definition for ‘predict’
    cv.survpath: no visible binding for global variable ‘weighted.mean’
    error.bars: no visible global function definition for ‘segments’
    getoutput: no visible global function definition for ‘new’
    lambda.interp: no visible global function definition for ‘approx’
    plot.cocktail: no visible global function definition for ‘matplot’
    plot.cocktail: no visible global function definition for ‘gray.colors’
    plot.cocktail: no visible global function definition for ‘text’
    plot.cv.cocktail: no visible global function definition for ‘points’
    plot.cv.cocktail: no visible global function definition for ‘axis’
    plot.cv.cocktail: no visible global function definition for ‘abline’
    zeromat: no visible global function definition for ‘new’
    Undefined global functions or variables:
     abline approx axis gray.colors matplot new points predict segments
     text weighted.mean
    Consider adding
     importFrom("grDevices", "gray.colors")
     importFrom("graphics", "abline", "axis", "matplot", "points",
     "segments", "text")
     importFrom("methods", "new")
     importFrom("stats", "approx", "predict", "weighted.mean")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1.1
Check: compiled code
Result: NOTE
    File ‘fastcox/libs/fastcox.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Flags: --no-stop-on-test-error
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Different type kinds at (1)
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1.1
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    cv.cocktail: no visible global function definition for ‘predict’
    cv.survpath: no visible global function definition for ‘predict’
    cv.survpath: no visible binding for global variable ‘weighted.mean’
    error.bars: no visible global function definition for ‘segments’
    getoutput: no visible global function definition for ‘new’
    lambda.interp: no visible global function definition for ‘approx’
    plot.cocktail: no visible global function definition for ‘matplot’
    plot.cocktail: no visible global function definition for ‘gray.colors’
    plot.cocktail: no visible global function definition for ‘text’
    plot.cv.cocktail: no visible global function definition for ‘points’
    plot.cv.cocktail: no visible global function definition for ‘axis’
    plot.cv.cocktail: no visible global function definition for ‘abline’
    zeromat: no visible global function definition for ‘new’
    Undefined global functions or variables:
     abline approx axis gray.colors matplot new points predict segments
     text weighted.mean
    Consider adding
     importFrom("grDevices", "gray.colors")
     importFrom("graphics", "abline", "axis", "matplot", "points",
     "segments", "text")
     importFrom("methods", "new")
     importFrom("stats", "approx", "predict", "weighted.mean")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1.1
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘fastcox/libs/fastcox.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.1.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1)
Flavor: r-release-osx-x86_64-mavericks