CRAN Package Check Results for Package fda

Last updated on 2016-09-27 03:50:48.

Check Details

Version: 2.4.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘R.matlab’ ‘RCurl’ ‘nlme’ ‘quadprog’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     fRegress.CV fRegress.stderr norder.bspline plot.cca.fd plot.pca.fd
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.4.4
Check: R code for possible problems
Result: NOTE
    AmpPhaseDecomp: no visible global function definition for ‘cov’
    Fperm.fd: no visible global function definition for ‘quantile’
    Fperm.fd: no visible binding for global variable ‘quantile’
    Fperm.fd: no visible global function definition for ‘plot’
    Fperm.fd: no visible global function definition for ‘lines’
    Fperm.fd: no visible global function definition for ‘abline’
    Fperm.fd: no visible global function definition for ‘legend’
    Fperm.fd: no visible global function definition for ‘hist’
    Fstat.fd: no visible binding for global variable ‘var’
    Fstat.fd: no visible global function definition for ‘var’
    TaylorSpline.fd: no visible global function definition for ‘coef’
    as.fd.dierckx: no visible global function definition for ‘coef’
    axesIntervals: no visible global function definition for ‘axis’
    axisIntervals: no visible global function definition for ‘axis’
    constraintCheck: no visible global function definition for ‘dist’
    create.bspline.irregular: no visible global function definition for
     ‘quantile’
    create.bspline.irregular: no visible binding for global variable ‘plot’
    create.bspline.irregular: no visible global function definition for
     ‘points’
    cycleplot.fd: no visible global function definition for ‘plot’
    cycleplot.fd: no visible global function definition for ‘mtext’
    cycleplot.fd: no visible global function definition for ‘text’
    cycleplot.fd: no visible global function definition for ‘locator’
    eigen.pda: no visible global function definition for ‘par’
    eigen.pda: no visible global function definition for ‘abline’
    exponentiate.fd: no visible global function definition for ‘predict’
    fRegress.fdPar: no visible global function definition for ‘var’
    fRegress.formula: no visible global function definition for ‘terms’
    fRegress.formula: no visible global function definition for ‘formula’
    fRegress.formula: no visible global function definition for
     ‘model.matrix’
    fRegress.numeric: no visible global function definition for ‘var’
    fbplot: no visible global function definition for ‘matlines’
    fbplot: no visible global function definition for ‘lines’
    fbplot: no visible global function definition for ‘polygon’
    fitted.monfd: no visible global function definition for ‘predict’
    fitted.posfd: no visible global function definition for ‘predict’
    fngrad.smooth.monotone: no visible global function definition for
     ‘lsfit’
    lines.fd: no visible global function definition for ‘par’
    lines.fd: no visible global function definition for ‘lines’
    lines.fd: no visible global function definition for ‘matlines’
    lines.fdSmooth: no visible global function definition for ‘lines’
    lmWinsor1: no visible global function definition for ‘quantile’
    lmWinsor1: no visible global function definition for ‘predict.lm’
    lmWinsor1: no visible global function definition for ‘coef’
    lmWinsor1: no visible global function definition for ‘model.matrix’
    lmeWinsor: no visible global function definition for ‘quantile’
    matplot.Date: no visible global function definition for ‘par’
    matplot.POSIXct: no visible global function definition for ‘par’
    matplot.POSIXct: no visible global function definition for ‘plot’
    matplot.POSIXct: no visible global function definition for ‘matlines’
    matplot.default: no visible global function definition for ‘par’
    monfn: no visible global function definition for ‘approx’
    mongrad: no visible global function definition for ‘approx’
    monhess: no visible global function definition for ‘approx’
    pda.overlay: no visible global function definition for ‘plot’
    pda.overlay: no visible global function definition for ‘abline’
    pda.overlay: no visible global function definition for ‘lines’
    pda.overlay: no visible global function definition for ‘text’
    phaseplanePlot: no visible global function definition for ‘plot’
    phaseplanePlot: no visible global function definition for ‘lines’
    phaseplanePlot: no visible global function definition for ‘text’
    plot.Lfd: no visible global function definition for ‘par’
    plot.Lfd: no visible global function definition for ‘plot’
    plot.basisfd: no visible binding for global variable ‘plot’
    plot.basisfd: no visible binding for global variable ‘matlines’
    plot.basisfd: no visible global function definition for ‘abline’
    plot.cca.fd: no visible global function definition for ‘par’
    plot.cca.fd: no visible global function definition for ‘plot’
    plot.fd: no visible global function definition for ‘plot’
    plot.fd: no visible global function definition for ‘abline’
    plot.fd: no visible global function definition for ‘par’
    plot.fd: no visible global function definition for ‘title’
    plot.fdPar: no visible global function definition for ‘plot’
    plot.fdSmooth: no visible global function definition for ‘plot’
    plot.lmWinsor: no visible global function definition for ‘formula’
    plot.lmWinsor: no visible global function definition for ‘model.frame’
    plot.lmWinsor: no visible global function definition for ‘predict’
    plot.lmWinsor: no visible global function definition for ‘abline’
    plot.lmWinsor: no visible global function definition for ‘lines’
    plot.pca.fd: no visible global function definition for ‘par’
    plot.pca.fd: no visible global function definition for ‘plot’
    plot.pca.fd: no visible global function definition for ‘points’
    plot.pca.fd: no visible global function definition for ‘lines’
    plot.pda.fd: no visible global function definition for ‘par’
    plot.pda.fd: no visible global function definition for ‘plot’
    plot.pda.fd: no visible global function definition for ‘legend’
    plot.pda.fd: no visible global function definition for ‘dev.new’
    plotbeta: no visible global function definition for ‘par’
    plotbeta: no visible global function definition for ‘plot’
    plotbeta: no visible global function definition for ‘lines’
    plotbeta: no visible global function definition for ‘title’
    plotfit.fd: no visible global function definition for ‘par’
    plotfit.fd: no visible global function definition for ‘plot’
    plotfit.fd: no visible global function definition for ‘abline’
    plotfit.fd: no visible global function definition for ‘title’
    plotfit.fd: no visible global function definition for ‘lines’
    plotfit.fd: no visible global function definition for ‘points’
    plotfit.fd: no visible global function definition for ‘matlines’
    plotreg.fd: no visible global function definition for ‘par’
    plotreg.fd: no visible global function definition for ‘plot’
    plotreg.fd: no visible global function definition for ‘lines’
    plotreg.fd: no visible global function definition for ‘abline’
    plotscores: no visible global function definition for ‘plot’
    plotscores: no visible global function definition for ‘locator’
    predict.fRegress: no visible global function definition for ‘predict’
    predict.lmWinsor: no visible binding for global variable ‘na.pass’
    predict.lmWinsor: no visible global function definition for ‘formula’
    predict.lmeWinsor: no visible binding for global variable ‘na.fail’
    predict.lmeWinsor: no visible global function definition for ‘formula’
    predict.lmeWinsor: no visible global function definition for ‘fitted’
    readHMD: no visible global function definition for ‘read.table’
    register.fd0 : ss.dy2: no visible global function definition for
     ‘integrate’
    register.fd0: no visible global function definition for ‘optimize’
    regyfn: no visible global function definition for ‘approx’
    residuals.fRegress: no visible global function definition for ‘predict’
    residuals.monfd: no visible global function definition for ‘predict’
    residuals.posfd: no visible global function definition for ‘predict’
    shifty: no visible global function definition for ‘approx’
    smooth.basis1: no visible binding for global variable ‘var’
    tperm.fd: no visible binding for global variable ‘var’
    tperm.fd: no visible global function definition for ‘quantile’
    tperm.fd: no visible binding for global variable ‘quantile’
    tperm.fd: no visible global function definition for ‘plot’
    tperm.fd: no visible global function definition for ‘lines’
    tperm.fd: no visible global function definition for ‘abline’
    tperm.fd: no visible global function definition for ‘legend’
    var.fd: no visible global function definition for ‘var’
    varmx: no visible binding for global variable ‘var’
    Undefined global functions or variables:
     abline approx axis coef cov dev.new dist fitted formula hist
     integrate legend lines locator lsfit matlines model.frame
     model.matrix mtext na.fail na.pass optimize par plot points polygon
     predict predict.lm quantile read.table terms text title var
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
     "locator", "matlines", "mtext", "par", "plot", "points",
     "polygon", "text", "title")
     importFrom("stats", "approx", "coef", "cov", "dist", "fitted",
     "formula", "integrate", "lsfit", "model.frame",
     "model.matrix", "na.fail", "na.pass", "optimize", "predict",
     "predict.lm", "quantile", "terms", "var")
     importFrom("utils", "read.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.4.4
Flags: --no-examples
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘R.matlab’ ‘RCurl’ ‘nlme’ ‘quadprog’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavor: r-patched-solaris-sparc

Version: 2.4.4
Flags: --no-examples
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     fRegress.CV fRegress.stderr norder.bspline plot.cca.fd plot.pca.fd
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavor: r-patched-solaris-sparc

Version: 2.4.4
Flags: --no-examples
Check: R code for possible problems
Result: NOTE
    AmpPhaseDecomp: no visible global function definition for ‘cov’
    Fperm.fd: no visible global function definition for ‘quantile’
    Fperm.fd: no visible binding for global variable ‘quantile’
    Fperm.fd: no visible global function definition for ‘plot’
    Fperm.fd: no visible global function definition for ‘lines’
    Fperm.fd: no visible global function definition for ‘abline’
    Fperm.fd: no visible global function definition for ‘legend’
    Fperm.fd: no visible global function definition for ‘hist’
    Fstat.fd: no visible binding for global variable ‘var’
    Fstat.fd: no visible global function definition for ‘var’
    TaylorSpline.fd: no visible global function definition for ‘coef’
    as.fd.dierckx: no visible global function definition for ‘coef’
    axesIntervals: no visible global function definition for ‘axis’
    axisIntervals: no visible global function definition for ‘axis’
    constraintCheck: no visible global function definition for ‘dist’
    create.bspline.irregular: no visible global function definition for
     ‘quantile’
    create.bspline.irregular: no visible binding for global variable ‘plot’
    create.bspline.irregular: no visible global function definition for
     ‘points’
    cycleplot.fd: no visible global function definition for ‘plot’
    cycleplot.fd: no visible global function definition for ‘mtext’
    cycleplot.fd: no visible global function definition for ‘text’
    cycleplot.fd: no visible global function definition for ‘locator’
    eigen.pda: no visible global function definition for ‘par’
    eigen.pda: no visible global function definition for ‘abline’
    exponentiate.fd: no visible global function definition for ‘predict’
    fRegress.fdPar: no visible global function definition for ‘var’
    fRegress.formula: no visible global function definition for ‘terms’
    fRegress.formula: no visible global function definition for ‘formula’
    fRegress.formula: no visible global function definition for
     ‘model.matrix’
    fRegress.numeric: no visible global function definition for ‘var’
    fbplot: no visible global function definition for ‘matlines’
    fbplot: no visible global function definition for ‘lines’
    fbplot: no visible global function definition for ‘polygon’
    fitted.monfd: no visible global function definition for ‘predict’
    fitted.posfd: no visible global function definition for ‘predict’
    fngrad.smooth.monotone: no visible global function definition for
     ‘lsfit’
    lines.fd: no visible global function definition for ‘par’
    lines.fd: no visible global function definition for ‘lines’
    lines.fd: no visible global function definition for ‘matlines’
    lines.fdSmooth: no visible global function definition for ‘lines’
    lmWinsor1: no visible global function definition for ‘quantile’
    lmWinsor1: no visible global function definition for ‘predict.lm’
    lmWinsor1: no visible global function definition for ‘coef’
    lmWinsor1: no visible global function definition for ‘model.matrix’
    lmeWinsor: no visible global function definition for ‘quantile’
    matplot.Date: no visible global function definition for ‘par’
    matplot.POSIXct: no visible global function definition for ‘par’
    matplot.POSIXct: no visible global function definition for ‘plot’
    matplot.POSIXct: no visible global function definition for ‘matlines’
    matplot.default: no visible global function definition for ‘par’
    monfn: no visible global function definition for ‘approx’
    mongrad: no visible global function definition for ‘approx’
    monhess: no visible global function definition for ‘approx’
    pda.overlay: no visible global function definition for ‘plot’
    pda.overlay: no visible global function definition for ‘abline’
    pda.overlay: no visible global function definition for ‘lines’
    pda.overlay: no visible global function definition for ‘text’
    phaseplanePlot: no visible global function definition for ‘plot’
    phaseplanePlot: no visible global function definition for ‘lines’
    phaseplanePlot: no visible global function definition for ‘text’
    plot.Lfd: no visible global function definition for ‘par’
    plot.Lfd: no visible global function definition for ‘plot’
    plot.basisfd: no visible binding for global variable ‘plot’
    plot.basisfd: no visible binding for global variable ‘matlines’
    plot.basisfd: no visible global function definition for ‘abline’
    plot.cca.fd: no visible global function definition for ‘par’
    plot.cca.fd: no visible global function definition for ‘plot’
    plot.fd: no visible global function definition for ‘plot’
    plot.fd: no visible global function definition for ‘abline’
    plot.fd: no visible global function definition for ‘par’
    plot.fd: no visible global function definition for ‘title’
    plot.fdPar: no visible global function definition for ‘plot’
    plot.fdSmooth: no visible global function definition for ‘plot’
    plot.lmWinsor: no visible global function definition for ‘formula’
    plot.lmWinsor: no visible global function definition for ‘model.frame’
    plot.lmWinsor: no visible global function definition for ‘predict’
    plot.lmWinsor: no visible global function definition for ‘abline’
    plot.lmWinsor: no visible global function definition for ‘lines’
    plot.pca.fd: no visible global function definition for ‘par’
    plot.pca.fd: no visible global function definition for ‘plot’
    plot.pca.fd: no visible global function definition for ‘points’
    plot.pca.fd: no visible global function definition for ‘lines’
    plot.pda.fd: no visible global function definition for ‘par’
    plot.pda.fd: no visible global function definition for ‘plot’
    plot.pda.fd: no visible global function definition for ‘legend’
    plot.pda.fd: no visible global function definition for ‘dev.new’
    plotbeta: no visible global function definition for ‘par’
    plotbeta: no visible global function definition for ‘plot’
    plotbeta: no visible global function definition for ‘lines’
    plotbeta: no visible global function definition for ‘title’
    plotfit.fd: no visible global function definition for ‘par’
    plotfit.fd: no visible global function definition for ‘plot’
    plotfit.fd: no visible global function definition for ‘abline’
    plotfit.fd: no visible global function definition for ‘title’
    plotfit.fd: no visible global function definition for ‘lines’
    plotfit.fd: no visible global function definition for ‘points’
    plotfit.fd: no visible global function definition for ‘matlines’
    plotreg.fd: no visible global function definition for ‘par’
    plotreg.fd: no visible global function definition for ‘plot’
    plotreg.fd: no visible global function definition for ‘lines’
    plotreg.fd: no visible global function definition for ‘abline’
    plotscores: no visible global function definition for ‘plot’
    plotscores: no visible global function definition for ‘locator’
    predict.fRegress: no visible global function definition for ‘predict’
    predict.lmWinsor: no visible binding for global variable ‘na.pass’
    predict.lmWinsor: no visible global function definition for ‘formula’
    predict.lmeWinsor: no visible binding for global variable ‘na.fail’
    predict.lmeWinsor: no visible global function definition for ‘formula’
    predict.lmeWinsor: no visible global function definition for ‘fitted’
    readHMD: no visible global function definition for ‘read.table’
    register.fd0 : ss.dy2: no visible global function definition for
     ‘integrate’
    register.fd0: no visible global function definition for ‘optimize’
    regyfn: no visible global function definition for ‘approx’
    residuals.fRegress: no visible global function definition for ‘predict’
    residuals.monfd: no visible global function definition for ‘predict’
    residuals.posfd: no visible global function definition for ‘predict’
    shifty: no visible global function definition for ‘approx’
    smooth.basis1: no visible binding for global variable ‘var’
    tperm.fd: no visible binding for global variable ‘var’
    tperm.fd: no visible global function definition for ‘quantile’
    tperm.fd: no visible binding for global variable ‘quantile’
    tperm.fd: no visible global function definition for ‘plot’
    tperm.fd: no visible global function definition for ‘lines’
    tperm.fd: no visible global function definition for ‘abline’
    tperm.fd: no visible global function definition for ‘legend’
    var.fd: no visible global function definition for ‘var’
    varmx: no visible binding for global variable ‘var’
    Undefined global functions or variables:
     abline approx axis coef cov dev.new dist fitted formula hist
     integrate legend lines locator lsfit matlines model.frame
     model.matrix mtext na.fail na.pass optimize par plot points polygon
     predict predict.lm quantile read.table terms text title var
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
     "locator", "matlines", "mtext", "par", "plot", "points",
     "polygon", "text", "title")
     importFrom("stats", "approx", "coef", "cov", "dist", "fitted",
     "formula", "integrate", "lsfit", "model.frame",
     "model.matrix", "na.fail", "na.pass", "optimize", "predict",
     "predict.lm", "quantile", "terms", "var")
     importFrom("utils", "read.table")
    to your NAMESPACE file.
Flavor: r-patched-solaris-sparc