CRAN Package Check Results for Package ffbase

Last updated on 2018-06-25 00:49:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.12.3 5.51 46.20 51.71 ERROR
r-devel-linux-x86_64-debian-gcc 0.12.3 4.53 39.74 44.27 ERROR
r-devel-linux-x86_64-fedora-clang 0.12.3 74.46 NOTE
r-devel-linux-x86_64-fedora-gcc 0.12.3 69.08 NOTE
r-devel-windows-ix86+x86_64 0.12.3 27.00 111.00 138.00 OK
r-patched-linux-x86_64 0.12.3 6.29 48.34 54.63 ERROR
r-patched-solaris-x86 0.12.3 102.10 OK
r-release-linux-x86_64 0.12.3 5.63 47.94 53.57 ERROR
r-release-windows-ix86+x86_64 0.12.3 22.00 150.00 172.00 OK
r-release-osx-x86_64 0.12.3 OK
r-oldrel-windows-ix86+x86_64 0.12.3 16.00 154.00 170.00 OK
r-oldrel-osx-x86_64 0.12.3 OK

Check Details

Version: 0.12.3
Check: compiled code
Result: NOTE
    File ‘ffbase/libs/ffbase.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.12.3
Check: examples
Result: ERROR
    Running examples in ‘ffbase-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: bigglm.ffdf
    > ### Title: Bounded memory linear regression
    > ### Aliases: bigglm.ffdf
    >
    > ### ** Examples
    >
    > library(biglm)
    Loading required package: DBI
    > library(ff)
    >
    > data(trees)
    > x <- as.ffdf(trees)
    > a <- bigglm(log(Volume)~log(Girth)+log(Height),
    + data=x, chunksize=10, sandwich=TRUE)
    Error in UseMethod("bigglm", data) :
     no applicable method for 'bigglm' applied to an object of class "ffdf"
    Calls: bigglm -> bigglm
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.12.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [12s/12s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > #library(ffbase)
     > library(testthat)
     >
     > test_check("ffbase")
     Loading required package: ffbase
     Loading required package: ff
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package ff
     - getOption("fftempdir")=="/tmp/Rtmpjpm75V"
    
     - getOption("ffextension")=="ff"
    
     - getOption("ffdrop")==TRUE
    
     - getOption("fffinonexit")==TRUE
    
     - getOption("ffpagesize")==65536
    
     - getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
    
     - getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
    
     - getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
    
    
     Attaching package: 'ff'
    
     The following objects are masked from 'package:bit':
    
     clone, clone.default, clone.list
    
     The following objects are masked from 'package:utils':
    
     write.csv, write.csv2
    
     The following objects are masked from 'package:base':
    
     is.factor, is.ordered
    
     Registered S3 methods overwritten by 'ffbase':
     method from
     [.ff ff
     [.ffdf ff
     [<-.ff ff
     [<-.ffdf ff
    
     Attaching package: 'ffbase'
    
     The following objects are masked from 'package:ff':
    
     [.ff, [.ffdf, [<-.ff, [<-.ffdf
    
     The following objects are masked from 'package:base':
    
     %in%, table
    
     ── 1. Error: Coercing an ff vector works (@testffappend.R#65) ─────────────────
     clone not defined for type
     1: ffappend(fx, fy, by = 2) at testthat/testffappend.R:65
     2: coerce_to_highest_vmode(x = x, y = y, onlytest = FALSE)
     3: clone(x, vmode = needtocoerce$coerceto)
     4: clone.default(x, vmode = needtocoerce$coerceto)
     5: stop("clone not defined for type")
    
     ── 2. Error: Coercing an ffdf works (@testffappend.R#89) ──────────────────────
     clone not defined for type
     1: ffdfappend(x = x, dat = dat, by = 2) at testthat/testffappend.R:89
     2: coerce_to_highest_vmode(x = x, y = dat, onlytest = FALSE)
     3: clone(x[[column]], vmode = needtocoerce$coerceto[i])
     4: clone.default(x[[column]], vmode = needtocoerce$coerceto[i])
     5: stop("clone not defined for type")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 192 SKIPPED: 3 FAILED: 2
     1. Error: Coercing an ff vector works (@testffappend.R#65)
     2. Error: Coercing an ffdf works (@testffappend.R#89)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.12.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > #library(ffbase)
     > library(testthat)
     >
     > test_check("ffbase")
     Loading required package: ffbase
     Loading required package: ff
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package ff
     - getOption("fftempdir")=="/home/hornik/tmp/scratch/Rtmpy37Bpo"
    
     - getOption("ffextension")=="ff"
    
     - getOption("ffdrop")==TRUE
    
     - getOption("fffinonexit")==TRUE
    
     - getOption("ffpagesize")==65536
    
     - getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
    
     - getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
    
     - getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
    
    
     Attaching package: 'ff'
    
     The following objects are masked from 'package:bit':
    
     clone, clone.default, clone.list
    
     The following objects are masked from 'package:utils':
    
     write.csv, write.csv2
    
     The following objects are masked from 'package:base':
    
     is.factor, is.ordered
    
     Registered S3 methods overwritten by 'ffbase':
     method from
     [.ff ff
     [.ffdf ff
     [<-.ff ff
     [<-.ffdf ff
    
     Attaching package: 'ffbase'
    
     The following objects are masked from 'package:ff':
    
     [.ff, [.ffdf, [<-.ff, [<-.ffdf
    
     The following objects are masked from 'package:base':
    
     %in%, table
    
     ── 1. Error: Coercing an ff vector works (@testffappend.R#65) ─────────────────
     clone not defined for type
     1: ffappend(fx, fy, by = 2) at testthat/testffappend.R:65
     2: coerce_to_highest_vmode(x = x, y = y, onlytest = FALSE)
     3: clone(x, vmode = needtocoerce$coerceto)
     4: clone.default(x, vmode = needtocoerce$coerceto)
     5: stop("clone not defined for type")
    
     ── 2. Error: Coercing an ffdf works (@testffappend.R#89) ──────────────────────
     clone not defined for type
     1: ffdfappend(x = x, dat = dat, by = 2) at testthat/testffappend.R:89
     2: coerce_to_highest_vmode(x = x, y = dat, onlytest = FALSE)
     3: clone(x[[column]], vmode = needtocoerce$coerceto[i])
     4: clone.default(x[[column]], vmode = needtocoerce$coerceto[i])
     5: stop("clone not defined for type")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 192 SKIPPED: 3 FAILED: 2
     1. Error: Coercing an ff vector works (@testffappend.R#65)
     2. Error: Coercing an ffdf works (@testffappend.R#89)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.12.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/17s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > #library(ffbase)
     > library(testthat)
     >
     > test_check("ffbase")
     Loading required package: ffbase
     Loading required package: ff
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package ff
     - getOption("fftempdir")=="/tmp/Rtmp2Bilta"
    
     - getOption("ffextension")=="ff"
    
     - getOption("ffdrop")==TRUE
    
     - getOption("fffinonexit")==TRUE
    
     - getOption("ffpagesize")==65536
    
     - getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
    
     - getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
    
     - getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
    
    
     Attaching package: 'ff'
    
     The following objects are masked from 'package:bit':
    
     clone, clone.default, clone.list
    
     The following objects are masked from 'package:utils':
    
     write.csv, write.csv2
    
     The following objects are masked from 'package:base':
    
     is.factor, is.ordered
    
    
     Attaching package: 'ffbase'
    
     The following objects are masked from 'package:ff':
    
     [.ff, [.ffdf, [<-.ff, [<-.ffdf
    
     The following objects are masked from 'package:base':
    
     %in%, table
    
     ── 1. Error: Coercing an ff vector works (@testffappend.R#65) ─────────────────
     clone not defined for type
     1: ffappend(fx, fy, by = 2) at testthat/testffappend.R:65
     2: coerce_to_highest_vmode(x = x, y = y, onlytest = FALSE)
     3: clone(x, vmode = needtocoerce$coerceto)
     4: clone.default(x, vmode = needtocoerce$coerceto)
     5: stop("clone not defined for type")
    
     ── 2. Error: Coercing an ffdf works (@testffappend.R#89) ──────────────────────
     clone not defined for type
     1: ffdfappend(x = x, dat = dat, by = 2) at testthat/testffappend.R:89
     2: coerce_to_highest_vmode(x = x, y = dat, onlytest = FALSE)
     3: clone(x[[column]], vmode = needtocoerce$coerceto[i])
     4: clone.default(x[[column]], vmode = needtocoerce$coerceto[i])
     5: stop("clone not defined for type")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 192 SKIPPED: 3 FAILED: 2
     1. Error: Coercing an ff vector works (@testffappend.R#65)
     2. Error: Coercing an ffdf works (@testffappend.R#89)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.12.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/16s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > #library(ffbase)
     > library(testthat)
     >
     > test_check("ffbase")
     Loading required package: ffbase
     Loading required package: ff
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package ff
     - getOption("fftempdir")=="/tmp/RtmpA1cPaW"
    
     - getOption("ffextension")=="ff"
    
     - getOption("ffdrop")==TRUE
    
     - getOption("fffinonexit")==TRUE
    
     - getOption("ffpagesize")==65536
    
     - getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
    
     - getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
    
     - getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
    
    
     Attaching package: 'ff'
    
     The following objects are masked from 'package:bit':
    
     clone, clone.default, clone.list
    
     The following objects are masked from 'package:utils':
    
     write.csv, write.csv2
    
     The following objects are masked from 'package:base':
    
     is.factor, is.ordered
    
    
     Attaching package: 'ffbase'
    
     The following objects are masked from 'package:ff':
    
     [.ff, [.ffdf, [<-.ff, [<-.ffdf
    
     The following objects are masked from 'package:base':
    
     %in%, table
    
     ── 1. Error: Coercing an ff vector works (@testffappend.R#65) ─────────────────
     clone not defined for type
     1: ffappend(fx, fy, by = 2) at testthat/testffappend.R:65
     2: coerce_to_highest_vmode(x = x, y = y, onlytest = FALSE)
     3: clone(x, vmode = needtocoerce$coerceto)
     4: clone.default(x, vmode = needtocoerce$coerceto)
     5: stop("clone not defined for type")
    
     ── 2. Error: Coercing an ffdf works (@testffappend.R#89) ──────────────────────
     clone not defined for type
     1: ffdfappend(x = x, dat = dat, by = 2) at testthat/testffappend.R:89
     2: coerce_to_highest_vmode(x = x, y = dat, onlytest = FALSE)
     3: clone(x[[column]], vmode = needtocoerce$coerceto[i])
     4: clone.default(x[[column]], vmode = needtocoerce$coerceto[i])
     5: stop("clone not defined for type")
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 192 SKIPPED: 3 FAILED: 2
     1. Error: Coercing an ff vector works (@testffappend.R#65)
     2. Error: Coercing an ffdf works (@testffappend.R#89)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64