Last updated on 2017-09-21 05:48:25.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3-4 | 2.66 | 40.68 | 43.34 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3-4 | 2.48 | 39.30 | 41.78 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3-4 | 82.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3-4 | 80.42 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.3-4 | 11.00 | 148.00 | 159.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3-4 | 2.34 | 46.49 | 48.83 | NOTE | |
| r-patched-solaris-x86 | 1.3-4 | 98.70 | NOTE | |||
| r-release-linux-x86_64 | 1.3-4 | 2.50 | 46.22 | 48.72 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.3-4 | 10.00 | 120.00 | 130.00 | NOTE | |
| r-release-osx-x86_64 | 1.3-4 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3-4 | 10.00 | 83.00 | 93.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.3-4 | NOTE |
Version: 1.3-4
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to ‘clue’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘getData’ ‘newKccaObject’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3-4
Check: R code for possible problems
Result: NOTE
as.kcca.hclust: no visible global function definition for ‘cutree’
bootFlexclust: no visible global function definition for ‘runif’
boxOverlap: no visible binding for global variable ‘quantile’
cclust: no visible global function definition for ‘complete.cases’
centMedian: no visible binding for global variable ‘median’
centOptim: no visible global function definition for ‘optim’
centOptim01: no visible global function definition for ‘optim’
clusterEllipses: no visible global function definition for ‘cov’
clusterHulls: no visible global function definition for
‘complete.cases’
clusterHulls: no visible global function definition for ‘median’
clusterHulls: no visible global function definition for ‘chull’
distCor: no visible global function definition for ‘cor’
getDifferentCluster: no visible global function definition for
‘solve_LSAP’
kcca: no visible global function definition for ‘complete.cases’
kccaFamily : <anonymous>: no visible binding for global variable
‘median’
kruskalTest: no visible global function definition for ‘kruskal.test’
kruskalTest: no visible global function definition for ‘p.adjust’
medianInside: no visible binding for global variable ‘median’
medianInside: no visible binding for global variable ‘quantile’
panelShadow: no visible global function definition for ‘hcl’
panelShadow: no visible global function definition for ‘approx’
panelShadowBP: no visible global function definition for ‘quantile’
panelShadowViolin: no visible global function definition for ‘density’
perturbClusters: no visible global function definition for ‘runif’
priceFeature : circle: no visible global function definition for
‘runif’
priceFeature : square: no visible global function definition for
‘runif’
propBarchart: no visible global function definition for ‘aggregate’
propBarchart: no visible global function definition for ‘p.adjust’
randomTourMatrix: no visible global function definition for ‘rnorm’
randomTourRennes: no visible global function definition for ‘rnorm’
shadowStars: no visible global function definition for ‘dist’
stepFlexclust : bestKcca: no visible global function definition for
‘runif’
stripes: no visible global function definition for ‘grey’
placeLabels,projAxes: no visible global function definition for ‘tail’
Undefined global functions or variables:
aggregate approx chull complete.cases cor cov cutree density dist
grey hcl kruskal.test median optim p.adjust quantile rnorm runif
solve_LSAP tail
Consider adding
importFrom("grDevices", "chull", "grey", "hcl")
importFrom("stats", "aggregate", "approx", "complete.cases", "cor",
"cov", "cutree", "density", "dist", "kruskal.test",
"median", "optim", "p.adjust", "quantile", "rnorm", "runif")
importFrom("utils", "tail")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3-4
Check: compiled code
Result: NOTE
File ‘flexclust/libs/flexclust.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3-4
Check: tests
Result: ERROR
Running ‘boot.R’ [2s/2s]
Running ‘disttests.R’ [1s/1s]
Running the tests in ‘tests/disttests.R’ failed.
Complete output:
> library(flexclust)
Loading required package: grid
Loading required package: lattice
Loading required package: modeltools
Loading required package: stats4
>
> ## create a random matrix
> x <- matrix(rnorm(1000), ncol=4)
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.8975039
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3-4
Check: tests
Result: ERROR
Running ‘boot.R’ [2s/2s]
Running ‘disttests.R’ [1s/1s]
Running the tests in ‘tests/disttests.R’ failed.
Complete output:
> library(flexclust)
Loading required package: grid
Loading required package: lattice
Loading required package: modeltools
Loading required package: stats4
>
> ## create a random matrix
> x <- matrix(rnorm(1000), ncol=4)
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.9012212
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3-4
Check: tests
Result: ERROR
Running ‘boot.R’
Running ‘disttests.R’
Running ‘grouping.R’
Running ‘plots.R’
Running ‘weights.R’
Running the tests in ‘tests/disttests.R’ failed.
Complete output:
> library(flexclust)
Loading required package: grid
Loading required package: lattice
Loading required package: modeltools
Loading required package: stats4
>
> ## create a random matrix
> x <- matrix(rnorm(1000), ncol=4)
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.9160246
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3-4
Check: tests
Result: ERROR
Running ‘boot.R’
Running ‘disttests.R’
Running ‘grouping.R’
Running ‘plots.R’
Running ‘weights.R’
Running the tests in ‘tests/disttests.R’ failed.
Complete output:
> library(flexclust)
Loading required package: grid
Loading required package: lattice
Loading required package: modeltools
Loading required package: stats4
>
> ## create a random matrix
> x <- matrix(rnorm(1000), ncol=4)
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.8847722
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3-4
Check: running tests for arch ‘i386’
Result: ERROR
Running 'boot.R' [4s]
Running 'disttests.R' [2s]
Running 'grouping.R' [4s]
Running 'plots.R' [7s]
Running 'weights.R' [2s]
Running the tests in 'tests/disttests.R' failed.
Last 13 lines of output:
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.8740009
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.3-4
Check: running tests for arch ‘x64’
Result: ERROR
Running 'boot.R' [4s]
Running 'disttests.R' [2s]
Running 'grouping.R' [4s]
Running 'plots.R' [8s]
Running 'weights.R' [3s]
Running the tests in 'tests/disttests.R' failed.
Last 13 lines of output:
> rownames(x) <- 1:nrow(x)
>
> ## test canberra at margin
> x[1:10,1] <- 0
> x[1:20,2] <- 0
> x[1:30,3] <- 0
>
> stopifnot(all.equal(dist2(x,x,"eucl"), as.matrix(dist(x, "eucl"))))
> stopifnot(all.equal(dist2(x,x,"man"), as.matrix(dist(x, "man"))))
> stopifnot(all.equal(dist2(x,x,"max"), as.matrix(dist(x, "max"))))
> stopifnot(all.equal(dist2(x,x,"bin"), as.matrix(dist(x, "bin"))))
> stopifnot(all.equal(dist2(x,x,"can"), as.matrix(dist(x, "can"))))
Error: dist2(x, x, "can") and as.matrix(dist(x, "can")) are not equal:
Mean relative difference: 0.9119504
Execution halted
Flavor: r-devel-windows-ix86+x86_64