CRAN Package Check Results for Package fmri

Last updated on 2014-04-16 15:49:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5-0 3.15 42.10 45.25 NOTE
r-devel-linux-x86_64-debian-gcc 1.5-0 2.98 43.12 46.11 NOTE
r-devel-linux-x86_64-fedora-clang 1.5-0 81.92 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5-0 76.99 NOTE
r-devel-macosx-x86_64-clang 1.5-0 77.64 NOTE
r-devel-macosx-x86_64-gcc 1.5-0 NOTE
r-devel-windows-ix86+x86_64 1.5-0 12.00 60.00 72.00 NOTE
r-patched-linux-x86_64 1.5-0 3.01 42.81 45.82 NOTE
r-patched-solaris-sparc 1.5-0 482.50 NOTE
r-patched-solaris-x86 1.5-0 128.70 NOTE
r-release-linux-ix86 1.5-0 7.00 79.00 86.00 NOTE
r-release-linux-x86_64 1.5-0 2.97 43.53 46.50 NOTE
r-release-windows-ix86+x86_64 1.5-0 12.00 61.00 73.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5-0 12.00 58.00 70.00 NOTE

Check Details

Version: 1.5-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘tcltk’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5-0
Check: foreign function calls
Result: NOTE
    Calls with DUP = FALSE:
     .Fortran("lconnect", as.logical(mask), as.integer(n1), as.integer(n2),
     as.integer(n3), as.integer((n1 + 1)/2), as.integer((n2 +
     1)/2), as.integer((n3 + 1)/2), integer(n), integer(n),
     integer(n), logical(n), mask = logical(n), DUP = FALSE, PACKAGE = "fmri")
     .Fortran("sweepm", residuals = as.double(t(residuals)), as.logical(data$mask),
     as.integer(dy[1]), as.integer(dy[2]), as.integer(dy[3]),
     as.integer(dy[4]), PACKAGE = "fmri", DUP = FALSE)
     .Fortran("mcorr", as.double(residuals), as.logical(data$mask),
     as.integer(dy[1]), as.integer(dy[2]), as.integer(dy[3]),
     as.integer(dy[4]), scorr = double(prod(lags)), as.integer(lags[1]),
     as.integer(lags[2]), as.integer(lags[3]), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("smtime", as.double(x), as.integer(dx[1]), as.integer(dx[2]),
     as.integer(dx[3]), as.integer(dx[4]), as.logical(mask), as.double(h.time),
     xnew = double(prod(dx)), double(as.integer(2 * h.time + 1)),
     as.integer(2 * h.time + 1), DUP = FALSE, PACKAGE = "fmri")
     .Fortran("smspace", as.double(x), as.integer(dx[1]), as.integer(dx[2]),
     as.integer(dx[3]), as.integer(dx[4]), as.logical(mask), as.double(h.space),
     xnew = double(prod(dx)), as.double(wghts), double(prod(as.integer(2 *
     h.space/wghts + 1))), as.integer(as.integer(2 * h.space/wghts[1] +
     1)), as.integer(as.integer(2 * h.space/wghts[2] + 1)),
     as.integer(as.integer(2 * h.space/wghts[3] + 1)), DUP = FALSE,
     PACKAGE = "fmri")
     .Fortran("smtime", as.double(x), as.integer(dx[1]), as.integer(dx[2]),
     as.integer(dx[3]), as.integer(dx[4]), as.logical(mask), as.double(h.time),
     xnew = double(prod(dx)), double(as.integer(2 * h.time + 1)),
     as.integer(2 * h.time + 1), DUP = FALSE, PACKAGE = "fmri")
     .Fortran("smspace", as.double(x), as.integer(dx[1]), as.integer(dx[2]),
     as.integer(dx[3]), as.integer(dx[4]), as.logical(mask), as.double(h.space),
     xnew = double(prod(dx)), as.double(wghts), double(prod(as.integer(2 *
     h.space/wghts + 1))), as.integer(as.integer(2 * h.space/wghts[1] +
     1)), as.integer(as.integer(2 * h.space/wghts[2] + 1)),
     as.integer(as.integer(2 * h.space/wghts[3] + 1)), DUP = FALSE,
     PACKAGE = "fmri")
     .Fortran("fastica", as.double(t(y)), as.double(omega), as.integer(npca),
     as.integer(n), as.integer(Lsum), as.integer(ifun), as.integer(T),
     double(npca), v = double(npca * Lsum), normv = double(Lsum),
     as.double(s), double(npca), as.double(delta), DUP = FALSE,
     PACKAGE = "fmri")
     .Fortran("ivar", as.double(residuals), as.double(resscale), as.logical(mask),
     as.integer(n1), as.integer(n2), as.integer(n3), as.integer(nt),
     var = double(n1 * n2 * n3), PACKAGE = "fmri", DUP = FALSE)
     .Fortran("mean3D", as.double(res), as.integer(n1), as.integer(n2),
     as.integer(n3), as.integer(nt), y = double(prod(dy)), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("ivar", as.double(res), as.double(1), as.logical(rep(TRUE,
     prod(dy))), as.integer(n1), as.integer(n2), as.integer(n3),
     as.integer(nt), var = double(n1 * n2 * n3), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("smooth3d", as.double(y), as.double(sigma2), as.logical(!mask),
     as.logical(weighted), as.integer(n1), as.integer(n2), as.integer(n3),
     as.integer(dv), hakt = as.double(hmax), thnew = double(n1 *
     n2 * n3 * dv), as.integer(lkern), double(prod(dlw)),
     as.double(wghts), double(dv), PACKAGE = "fmri", DUP = FALSE)
     .Fortran("mcorr", as.double(residuals), as.logical(mask), as.integer(dy[2]),
     as.integer(dy[3]), as.integer(dy[4]), as.integer(dy[1]),
     scorr = double(prod(lags)), as.integer(lags[1]), as.integer(lags[2]),
     as.integer(lags[3]), PACKAGE = "fmri", DUP = FALSE)
     .Fortran("chaws2", as.double(y), as.double(sigma2), as.logical(!mask),
     as.logical(weighted), as.integer(n1), as.integer(n2), as.integer(n3),
     as.integer(dv), as.integer(dv0), hakt = as.double(hakt),
     as.double(lambda0), as.double(theta0), bi = as.double(bi0),
     thnew = double(n1 * n2 * n3 * dv), as.integer(lkern), as.integer(skern),
     as.double(spmin), as.double(spmax), double(prod(dlw)), as.double(wghts),
     as.double(vwghts), double(dv), double(dv0), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("chaws2", as.double(y), as.double(sigma2), as.logical(!mask),
     as.logical(weighted), as.integer(n1), as.integer(n2), as.integer(n3),
     as.integer(dv), as.integer(dv0), hakt = as.double(hakt),
     as.double(1e+50), as.double(theta0), bi = as.double(bi0),
     thnew = double(n1 * n2 * n3 * dv), as.integer(lkern), as.integer(skern),
     as.double(spmin), as.double(spmax), double(prod(dlw)), as.double(wghts),
     as.double(vwghts), double(dv), double(dv0), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("ivar", as.double(residuals), as.double(resscale), as.logical(mask),
     as.integer(ddim[1]), as.integer(ddim[2]), as.integer(ddim[3]),
     as.integer(ddim[4]), var = double(n1 * n2 * n3), PACKAGE = "fmri",
     DUP = FALSE)
     .Fortran("ihaws2", as.double(residuals), as.double(sigma2), as.logical(!mask),
     as.logical(weighted), as.integer(ddim[1]), as.integer(ddim[2]),
     as.integer(ddim[3]), as.integer(ddim[4]), as.integer(dv0),
     hakt = as.double(tobj$hakt), as.double(lambda0), as.double(theta0),
     as.double(bi0), resnew = double(prod(ddim)), as.integer(lkern),
     as.integer(skern), as.double(spmin), as.double(spmax), double(prod(dlw)),
     as.double(wghts), as.double(vwghts), double(ddim[4]), double(dv0),
     PACKAGE = "fmri", DUP = FALSE)
     .Fortran("imcorr", as.double(residuals), as.logical(mask), as.integer(n3),
     as.integer(n2), as.integer(n1), as.integer(ddim[4]), scorr = double(prod(lags)),
     as.integer(lags[1]), as.integer(lags[2]), as.integer(lags[3]),
     PACKAGE = "fmri", DUP = FALSE)
     .Fortran("ivar", as.double(residuals), as.double(resscale), as.logical(mask),
     as.integer(n1), as.integer(n2), as.integer(n3), as.integer(ddim[4]),
     var = double(n1 * n2 * n3), PACKAGE = "fmri", DUP = FALSE)
     .Fortran("chawsv", as.double(y), as.double(residuals), as.double(sigma2),
     as.logical(!mask), as.logical(weighted), as.integer(n1),
     as.integer(n2), as.integer(n3), as.integer(ddim[4]), as.integer(dv),
     as.integer(dv0), hakt = as.double(hakt), as.double(lambda0),
     as.double(theta0), bi = as.double(bi0), resnew = double(prod(ddim)),
     thnew = double(n1 * n2 * n3 * dv), as.integer(lkern), as.integer(skern),
     as.double(spmin), as.double(spmax), double(prod(dlw)), as.double(wghts),
     as.double(vwghts), double(dv), double(dv0), double(ddim[4]),
     PACKAGE = "fmri", DUP = FALSE)
     .Fortran("chawsv", as.double(y), as.double(residuals), as.double(sigma2),
     as.logical(!mask), as.logical(weighted), as.integer(n1),
     as.integer(n2), as.integer(n3), as.integer(ddim[4]), as.integer(dv),
     as.integer(dv0), hakt = as.double(hakt), as.double(1e+50),
     as.double(theta0), bi = as.double(bi0), resnew = double(prod(ddim)),
     thnew = double(n1 * n2 * n3 * dv), as.integer(lkern), as.integer(skern),
     as.double(spmin), as.double(spmax), double(prod(dlw)), as.double(wghts),
     as.double(vwghts), double(dv), double(dv0), double(ddim[4]),
     PACKAGE = "fmri", DUP = FALSE)
     .Fortran("imcorr", as.double(tobj$resnew), as.logical(mask),
     as.integer(n3), as.integer(n2), as.integer(n1), as.integer(ddim[4]),
     scorr = double(prod(lags)), as.integer(lags[1]), as.integer(lags[2]),
     as.integer(lags[3]), PACKAGE = "fmri", DUP = FALSE)
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-macosx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.5-0
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following functions:
     ‘fmri.gui’ ‘fmri.view2d’
    Found the platform-specific device:
     ‘X11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.5-0
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘COPYRIGHT’ ‘HISTORY’
    Copyright information should be in file inst/COPYRIGHTS
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc