CRAN Package Check Results for Package gRbase

Last updated on 2015-07-29 12:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-0.1 79.87 89.30 169.17 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-0.1 87.29 91.35 178.64 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-0.1 363.11 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-0.1 342.36 NOTE
r-devel-osx-x86_64-clang 1.7-0.1 243.93 NOTE
r-devel-windows-ix86+x86_64 1.7-0.1 234.00 165.00 399.00 NOTE
r-patched-linux-x86_64 1.7-0.1 86.06 93.60 179.66 NOTE
r-patched-solaris-sparc 1.7-0.1 2020.20 NOTE
r-patched-solaris-x86 1.7-0.1 407.70 NOTE
r-release-linux-x86_64 1.7-0.1 86.47 92.41 178.88 NOTE
r-release-osx-x86_64-mavericks 1.7-0.1 NOTE
r-release-windows-ix86+x86_64 1.7-0.1 352.00 171.00 523.00 NOTE
r-oldrel-windows-ix86+x86_64 1.7-0.1 288.00 196.00 484.00 NOTE

Memtest notes: UBSAN-gcc UBSAN-gcc UBSAN UBSAN

Check Details

Version: 1.7-0.1
Check: installed package size
Result: NOTE
     installed size is 9.1Mb
     sub-directories of 1Mb or more:
     libs 6.7Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.7-0.1
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘gRbase-Ex.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-0.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     all.subsets as.gmData.array as.gmData.data.frame as.gmData.table
     coerceGraph.dgCMatrix coerceGraph.graphNEL coerceGraph.igraph
     coerceGraph.matrix dataOrigin.gmData description<-.gmData
     edgeList.default fit.ggm fit.hllm formula<-.gModel getCliques.default
     getCliques.graphNEL getFit.gRfit getFit<-.gRfit gmData.gModel
     gmData<-.gModel iplot.graphNEL is.DAG.Matrix is.DAG.graphNEL
     is.DAG.matrix is.DG.Matrix is.DG.graphNEL is.DG.matrix is.TUG.Matrix
     is.TUG.graphNEL is.TUG.matrix is.UG.Matrix is.UG.graphNEL
     is.UG.matrix jTree.default latent.gmData latent<-.gmData mcs.default
     mcsmarked.default minimalTriang.default moralize.default mpd.default
     nLevels.array nLevels.gmData nLevels.parray nLevels<-.gmData
     nominal.gmData nominal<-.gmData nonEdgeList.default
     observations.gmData observations<-.gmData ordinal.gmData
     ordinal<-.gmData plot.ripOrder print.gModel print.gRfit print.gmData
     print.parray print.ripOrder rip.default shortNames.gmData
     shortNames<-.gmData stepwise.hllm summary.gRfit summary.gmData
     topoSort.default triangulate.default update.gModel valueLabels.array
     valueLabels.gmData valueLabels.parray valueLabels<-.gmData
     varNames.array varNames.gmData varNames.parray varNames<-.gmData
     varTypes.gmData varTypes<-.gmData vpar.Matrix vpar.graphNEL
     vpar.matrix
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.7-0.1
Check: foreign function calls
Result: NOTE
    Call with DUP:
     .C("C_getCellNumber", as.integer(cell), as.integer(perm), as.integer(pvec),
     length(cell), integer(1), DUP = FALSE, PACKAGE = "gRbase")
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.7-0.1
Check: R code for possible problems
Result: NOTE
    .tableOp2: no visible global function definition for ‘str’
    addEdge.gModel: no visible global function definition for ‘formula’
    addEdge.gModel: no visible global function definition for ‘as.formula’
    conc2pcor: no visible global function definition for ‘cov2cor’
    cov2pcor: no visible global function definition for ‘cov2cor’
    data2parray: no visible global function definition for ‘xtabs’
    dropEdge.gModel: no visible global function definition for ‘formula’
    dropEdge.gModel: no visible global function definition for ‘as.formula’
    extract.power: no visible global function definition for ‘as.formula’
    fit.ggm: no visible global function definition for ‘cov’
    list2rhsFormula: no visible global function definition for ‘as.formula’
    list2rhsf: no visible global function definition for ‘as.formula’
    outfun: no visible global function definition for ‘cov2cor’
    print.gRfit: no visible global function definition for ‘deviance’
    tableOp2: no visible global function definition for ‘str’
    Undefined global functions or variables:
     as.formula cov cov2cor deviance formula str xtabs
    Consider adding
     importFrom("stats", "as.formula", "cov", "cov2cor", "deviance",
     "formula", "xtabs")
     importFrom("utils", "str")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.7-0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘microbenchmark’
Flavor: r-patched-solaris-sparc

Version: 1.7-0.1
Check: foreign function calls
Result: NOTE
    Call with DUP != TRUE:
     .C("C_getCellNumber", as.integer(cell), as.integer(perm), as.integer(pvec),
     length(cell), integer(1), DUP = FALSE, PACKAGE = "gRbase")
    DUP = FALSE is deprecated and will be disabled in future versions of R.
Flavor: r-oldrel-windows-ix86+x86_64