CRAN Package Check Results for Package gRim

Last updated on 2015-01-25 21:48:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-17 15.25 65.37 80.62 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-17 14.01 66.31 80.32 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-17 192.35 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-17 191.18 NOTE
r-devel-osx-x86_64-clang 0.1-17 159.28 NOTE
r-devel-windows-ix86+x86_64 0.1-17 42.00 122.00 164.00 NOTE
r-patched-linux-x86_64 0.1-17 15.74 70.59 86.32 NOTE
r-patched-solaris-sparc 0.1-17 1095.00 NOTE
r-patched-solaris-x86 0.1-17 249.70 NOTE
r-release-linux-ix86 0.1-17 17.68 83.45 101.14 NOTE
r-release-linux-x86_64 0.1-17 15.95 72.49 88.44 NOTE
r-release-osx-x86_64-mavericks 0.1-17 NOTE
r-release-osx-x86_64-snowleopard 0.1-17 NOTE
r-release-windows-ix86+x86_64 0.1-17 42.00 144.00 186.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-17 41.00 132.00 173.00 NOTE

Check Details

Version: 0.1-17
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘Wishlist.txt’ ‘gRim-Ex.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1-17
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘gRain’ ‘gRbase’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.1-17
Check: R code for possible problems
Result: NOTE
    .CGstats2initpms: no visible global function definition for
     ‘rowSumsPrim’
    .CI_MC_prim: no visible global function definition for ‘tableMargin’
    .CI_MC_prim: no visible global function definition for ‘outerPrim’
    .CI_MC_prim: no visible global function definition for ‘colSumsPrim’
    .CI_X2_prim: no visible global function definition for ‘tableMargin’
    .CI_X2_prim: no visible global function definition for ‘tablePerm’
    .CI_X2_prim: no visible global function definition for ‘tableOp’
    .CI_X2_prim: no visible global function definition for ‘rowSumsPrim’
    .add.edge_glist: no visible global function definition for ‘uniquePrim’
    .add.edge_glist: no visible global function definition for
     ‘intersectPrim’
    .add.edge_glist: no visible global function definition for
     ‘removeRedundant’
    .add.term: no visible global function definition for ‘removeRedundant’
    .add.term_glist: no visible global function definition for ‘isin’
    .add.term_glist: no visible global function definition for
     ‘removeRedundant’
    .aedge_glist: no visible global function definition for ‘uniquePrim’
    .aedge_glist: no visible global function definition for ‘intersectPrim’
    .aedge_glist: no visible global function definition for
     ‘removeRedundant’
    .aterm_glist: no visible global function definition for ‘isin’
    .aterm_glist: no visible global function definition for
     ‘removeRedundant’
    .cModel_finalize: no visible global function definition for ‘ugList’
    .cModel_finalize: no visible global function definition for
     ‘maxCliqueMAT’
    .cModel_finalize: no visible global function definition for ‘mcsMAT’
    .check.glist: no visible global function definition for ‘unlistPrim’
    .check.glist: no visible global function definition for ‘uniquePrim’
    .cov.wt: no visible global function definition for ‘colSumsPrim’
    .dModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .dModel_sparsity: no visible global function definition for
     ‘tableMargin’
    .delete.term: no visible global function definition for ‘isin’
    .delete.term: no visible global function definition for
     ‘removeRedundant’
    .drop.term_glist: no visible global function definition for ‘subsetof’
    .drop.term_glist: no visible global function definition for ‘combnPrim’
    .drop.term_glist: no visible global function definition for
     ‘unlistPrim’
    .drop.term_glist : <anonymous>: no visible global function definition
     for ‘subsetof’
    .drop.term_glist: no visible global function definition for
     ‘removeRedundant’
    .dterm_glist: no visible global function definition for ‘subsetof’
    .dterm_glist: no visible global function definition for ‘combnPrim’
    .dterm_glist: no visible global function definition for ‘unlistPrim’
    .dterm_glist : <anonymous>: no visible global function definition for
     ‘subsetof’
    .dterm_glist: no visible global function definition for
     ‘removeRedundant’
    .extendCGstats: no visible global function definition for ‘rowSumsPrim’
    .ghk2pmsParms: no visible global function definition for ‘solveSPD’
    .ghk2pmsParms: no visible global function definition for ‘colSumsPrim’
    .loglinDecDim: no visible global function definition for ‘tableMargin’
    .loglinDim: no visible global function definition for ‘unlistPrim’
    .loglinGenDim: no visible global function definition for ‘unlistPrim’
    .mModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .mModel_logLpms: no visible global function definition for ‘solveSPD’
    .mModelinfoPrimitive: no visible global function definition for
     ‘removeRedundant’
    .mmod_dimensionPrimitive: no visible global function definition for
     ‘glist2adjMAT’
    .normalize.ghkParms: no visible global function definition for
     ‘solveSPD’
    .normalize.ghkParms: no visible global function definition for
     ‘colSumsPrim’
    .pFormula2: no visible global function definition for ‘rhsFormula2list’
    .pFormula2: no visible global function definition for ‘maxCliqueMAT’
    .pFormula2: no visible global function definition for ‘as.adjMAT’
    .pFormula2: no visible global function definition for ‘uniquePrim’
    .parse.change.list : .foo: no visible global function definition for
     ‘rhsf2list’
    .parse.change.list : .foo: no visible binding for global variable
     ‘names2pairs’
    .parse.change.list: no visible global function definition for
     ‘matchPrim’
    .pms2ghkParms: no visible global function definition for ‘solveSPD’
    .pms2ghkParms: no visible global function definition for ‘colSumsPrim’
    .reduceSet: no visible global function definition for ‘isin’
    .rhsf2char: no visible global function definition for ‘rhsf2list’
    .set.interactions: no visible global function definition for
     ‘removeRedundant’
    .subtract.fix: no visible global function definition for ‘pairs2num’
    .subtract.fix: no visible global function definition for ‘matchPrim’
    .update.ghkParms: no visible global function definition for ‘tableOp2’
    .weak.datamarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.datamarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.mix: no visible global function definition for
     ‘nextCell’
    .weak.modelmarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.modelmarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.mix: no visible global function definition for
     ‘nextCell’
    backward: no visible global function definition for ‘isGSD_glist’
    backward: no visible global function definition for ‘glist2adjMAT’
    backward: no visible global function definition for ‘pairs2num’
    ciTest_df: no visible global function definition for ‘rhsFormula2list’
    ciTest_df: no visible global function definition for ‘uniquePrim’
    ciTest_mvn: no visible global function definition for ‘rhsFormula2list’
    ciTest_ordinal: no visible global function definition for
     ‘rhsFormula2list’
    ciTest_table: no visible global function definition for ‘tableMargin’
    ciTest_table: no visible global function definition for
     ‘rhsFormula2list’
    compareGC: no visible global function definition for ‘unlistPrim’
    compareGC : <anonymous>: no visible global function definition for
     ‘isin’
    compareGCpairs: no visible binding for global variable ‘combnPrim’
    dmod: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘ugList’
    effloglin: no visible global function definition for ‘triangulateMAT’
    effloglin: no visible global function definition for ‘ripMAT’
    effloglin : <anonymous>: no visible global function definition for
     ‘tableMargin’
    effloglin: no visible global function definition for ‘uniquePrim’
    effloglin : <anonymous>: no visible global function definition for
     ‘parray’
    effloglin: no visible global function definition for ‘propagateLS’
    effloglin: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘tableOp2’
    effloglin: no visible global function definition for ‘unlistPrim’
    effloglin: no visible global function definition for ‘tableOp’
    effloglin: no visible global function definition for ‘tablePerm’
    fit.dModel: no visible global function definition for ‘ripMAT’
    fit.dModel: no visible global function definition for ‘glist2adjMAT’
    fit.mModel: no visible global function definition for ‘rowSumsPrim’
    fit.mModel: no visible global function definition for ‘colwiseProd’
    forward: no visible global function definition for ‘isGSD_glist’
    forward: no visible global function definition for ‘glist2adjMAT’
    forward: no visible global function definition for ‘pairs2num’
    getEdges.graphNEL: no visible global function definition for
     ‘as.adjMAT’
    getEdges.list: no visible global function definition for ‘glist2adjMAT’
    getInEdgesMAT: no visible global function definition for ‘edgeListMAT’
    getInEdgesMAT: no visible global function definition for ‘mcsmarkedMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘nonEdgeListMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘mcsmarkedMAT’
    ggmfit: no visible global function definition for ‘uniquePrim’
    ggmfitr: no visible global function definition for ‘ellK’
    ghk2phkParms: no visible global function definition for ‘solveSPD’
    ghk2phkParms: no visible global function definition for ‘colSumsPrim’
    iplot.iModel: no visible global function definition for ‘ugList’
    loglinDecDim: no visible global function definition for ‘ripMAT’
    loglinDecDim: no visible global function definition for ‘glist2adjMAT’
    mmod: no visible global function definition for ‘intersectPrim’
    phk2ghkParms: no visible global function definition for ‘solveSPD’
    phk2ghkParms: no visible global function definition for ‘colSumsPrim’
    phk2pmsParms: no visible global function definition for ‘solveSPD’
    plot.iModel: no visible global function definition for ‘ugList’
    pms2phkParms: no visible global function definition for ‘solveSPD’
    stepwise.iModel: no visible global function definition for
     ‘isGSD_glist’
    summary.iModel: no visible global function definition for ‘getCliques’
    summary.iModel: no visible global function definition for ‘ugList’
    testInEdges: no visible global function definition for ‘glist2adjMAT’
    testOutEdges: no visible global function definition for ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testadd.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for ‘subsetof’
    testadd.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testadd.iModel: no visible global function definition for ‘mcsMAT’
    testadd.iModel: no visible global function definition for ‘isin’
    testadd.iModel: no visible global function definition for ‘setdiffPrim’
    testdelete.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testdelete.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testdelete.iModel: no visible global function definition for ‘subsetof’
    testdelete.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testdelete.iModel: no visible global function definition for ‘mcsMAT’
    testdelete.iModel: no visible global function definition for ‘isin’
    testdelete.iModel: no visible global function definition for
     ‘setdiffPrim’
    coerce,cModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,cModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,cModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,dModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,dModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,dModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,mModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,mModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,mModel-matrix: no visible global function definition for
     ‘ugList’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.1-17
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     CGstats.data.frame ciTest.data.frame ciTest.list ciTest.table
     getEdges.graphNEL getEdges.list getEdges.matrix testEdges.iModel
     testadd.iModel testdelete.iModel print.CGstats print.MIfit
     print.MIparms print.citest print.compareiModels print.dModel
     print.iModel print.iModelsummary print.testadd print.testdelete
     summary.citest summary.iModel summary.mModel plot.iModel coef.mModel
     extractAIC.iModel fitted.dModel formula.iModel logLik.iModel
     terms.iModel update.iModel compareModels.iModel fit.cModel fit.dModel
     fit.mModel iplot.iModel stepwise.iModel
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.1-17
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘gRain’ ‘gRbase’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64