CRAN Package Check Results for Package gRim

Last updated on 2015-08-29 00:48:12.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-17 12.90 59.01 71.92 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-17 12.76 57.65 70.42 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-17 146.60 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-17 141.81 NOTE
r-devel-osx-x86_64-clang 0.1-17 136.67 NOTE
r-devel-windows-ix86+x86_64 0.1-17 55.00 127.00 182.00 NOTE
r-patched-linux-x86_64 0.1-17 16.31 59.48 75.79 NOTE
r-patched-solaris-sparc 0.1-17 1032.90 NOTE
r-patched-solaris-x86 0.1-17 194.70 NOTE
r-release-linux-x86_64 0.1-17 13.10 60.33 73.43 NOTE
r-release-osx-x86_64-mavericks 0.1-17 NOTE
r-release-windows-ix86+x86_64 0.1-17 45.00 181.00 226.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-17 61.00 203.00 264.00 NOTE

Check Details

Version: 0.1-17
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.1-17
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘Wishlist.txt’ ‘gRim-Ex.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1-17
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘gRain’ ‘gRbase’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-17
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     CGstats.data.frame ciTest.data.frame ciTest.list ciTest.table
     coef.mModel compareModels.iModel extractAIC.iModel fit.cModel
     fit.dModel fit.mModel fitted.dModel formula.iModel getEdges.graphNEL
     getEdges.list getEdges.matrix iplot.iModel logLik.iModel plot.iModel
     print.CGstats print.MIfit print.MIparms print.citest
     print.compareiModels print.dModel print.iModel print.iModelsummary
     print.testadd print.testdelete stepwise.iModel summary.citest
     summary.iModel summary.mModel terms.iModel testEdges.iModel
     testadd.iModel testdelete.iModel update.iModel
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1-17
Check: R code for possible problems
Result: NOTE
    .CGstats2initpms: no visible global function definition for
     ‘rowSumsPrim’
    .CI.exact : LRT : oneslice: no visible global function definition for
     ‘addmargins’
    .CI.exact : LRT: no visible global function definition for ‘pchisq’
    .CI.exact : wilcoxon : oneslice: no visible global function definition
     for ‘addmargins’
    .CI.exact : wilcoxon: no visible global function definition for ‘pnorm’
    .CI.exact : kruskal : oneslice: no visible global function definition
     for ‘addmargins’
    .CI.exact : kruskal: no visible global function definition for ‘pchisq’
    .CI.exact : jt : oneslice: no visible global function definition for
     ‘addmargins’
    .CI.exact : jt: no visible global function definition for ‘pnorm’
    .CI.exact : rcsum: no visible global function definition for
     ‘addmargins’
    .CI.exact : rdev: no visible global function definition for ‘r2dtable’
    .CI.exact : wdev: no visible global function definition for ‘r2dtable’
    .CI.exact : kdev: no visible global function definition for ‘r2dtable’
    .CI.exact : jtdev: no visible global function definition for ‘r2dtable’
    .CI.exact: no visible global function definition for ‘ftable’
    .CI.ordinal : LRT : oneslice: no visible global function definition for
     ‘addmargins’
    .CI.ordinal : LRT: no visible global function definition for ‘pchisq’
    .CI.ordinal : wilcoxon : oneslice: no visible global function
     definition for ‘addmargins’
    .CI.ordinal : wilcoxon: no visible global function definition for
     ‘pnorm’
    .CI.ordinal : kruskal : oneslice: no visible global function definition
     for ‘addmargins’
    .CI.ordinal : kruskal: no visible global function definition for
     ‘pchisq’
    .CI.ordinal : jt : oneslice: no visible global function definition for
     ‘addmargins’
    .CI.ordinal : jt: no visible global function definition for ‘pnorm’
    .CI.ordinal : rcsum: no visible global function definition for
     ‘addmargins’
    .CI.ordinal : rdev: no visible global function definition for
     ‘r2dtable’
    .CI.ordinal : wdev: no visible global function definition for
     ‘r2dtable’
    .CI.ordinal : kdev: no visible global function definition for
     ‘r2dtable’
    .CI.ordinal : jtdev: no visible global function definition for
     ‘r2dtable’
    .CI.ordinal: no visible global function definition for ‘ftable’
    .CI_MC_prim: no visible global function definition for ‘tableMargin’
    .CI_MC_prim: no visible global function definition for ‘outerPrim’
    .CI_MC_prim: no visible global function definition for ‘r2dtable’
    .CI_MC_prim: no visible global function definition for ‘colSumsPrim’
    .CI_X2_prim: no visible global function definition for ‘tableMargin’
    .CI_X2_prim: no visible global function definition for ‘tablePerm’
    .CI_X2_prim: no visible global function definition for ‘tableOp’
    .CI_X2_prim: no visible global function definition for ‘rowSumsPrim’
    .CI_X2_prim: no visible global function definition for ‘pchisq’
    .add.edge_glist: no visible global function definition for ‘uniquePrim’
    .add.edge_glist: no visible global function definition for
     ‘intersectPrim’
    .add.edge_glist: no visible global function definition for
     ‘removeRedundant’
    .add.term: no visible global function definition for ‘removeRedundant’
    .add.term_glist: no visible global function definition for ‘isin’
    .add.term_glist: no visible global function definition for
     ‘removeRedundant’
    .aedge_glist: no visible global function definition for ‘uniquePrim’
    .aedge_glist: no visible global function definition for ‘intersectPrim’
    .aedge_glist: no visible global function definition for
     ‘removeRedundant’
    .aterm_glist: no visible global function definition for ‘isin’
    .aterm_glist: no visible global function definition for
     ‘removeRedundant’
    .cModel_finalize: no visible global function definition for ‘ugList’
    .cModel_finalize: no visible global function definition for
     ‘maxCliqueMAT’
    .cModel_finalize: no visible global function definition for ‘mcsMAT’
    .check.glist: no visible global function definition for ‘unlistPrim’
    .check.glist: no visible global function definition for ‘uniquePrim’
    .ciTest_mvn_internal: no visible global function definition for
     ‘pchisq’
    .ciTest_mvn_internal: no visible global function definition for ‘pf’
    .compareModel: no visible global function definition for ‘pchisq’
    .comparemodels: no visible global function definition for ‘pchisq’
    .cov.wt: no visible global function definition for ‘colSumsPrim’
    .dModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .dModel_sparsity: no visible global function definition for
     ‘tableMargin’
    .delete.term: no visible global function definition for ‘isin’
    .delete.term: no visible global function definition for
     ‘removeRedundant’
    .drop.term_glist: no visible global function definition for ‘subsetof’
    .drop.term_glist: no visible global function definition for ‘combnPrim’
    .drop.term_glist: no visible global function definition for
     ‘unlistPrim’
    .drop.term_glist : <anonymous>: no visible global function definition
     for ‘subsetof’
    .drop.term_glist: no visible global function definition for
     ‘removeRedundant’
    .dterm_glist: no visible global function definition for ‘subsetof’
    .dterm_glist: no visible global function definition for ‘combnPrim’
    .dterm_glist: no visible global function definition for ‘unlistPrim’
    .dterm_glist : <anonymous>: no visible global function definition for
     ‘subsetof’
    .dterm_glist: no visible global function definition for
     ‘removeRedundant’
    .extendCGstats: no visible global function definition for ‘rowSumsPrim’
    .ghk2pmsParms: no visible global function definition for ‘solveSPD’
    .ghk2pmsParms: no visible global function definition for ‘colSumsPrim’
    .glist2formula: no visible global function definition for ‘as.formula’
    .list2pairs : <anonymous>: no visible global function definition for
     ‘combn’
    .loglinDecDim: no visible global function definition for ‘tableMargin’
    .loglinDim: no visible global function definition for ‘unlistPrim’
    .loglinGenDim: no visible global function definition for ‘unlistPrim’
    .mModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .mModel_logLpms: no visible global function definition for ‘solveSPD’
    .mModelinfoPrimitive: no visible global function definition for
     ‘removeRedundant’
    .mmod_dimensionPrimitive: no visible global function definition for
     ‘glist2adjMAT’
    .normalize.ghkParms: no visible global function definition for
     ‘solveSPD’
    .normalize.ghkParms: no visible global function definition for
     ‘colSumsPrim’
    .pFormula2: no visible global function definition for ‘combn’
    .pFormula2: no visible global function definition for ‘rhsFormula2list’
    .pFormula2: no visible global function definition for ‘maxCliqueMAT’
    .pFormula2: no visible global function definition for ‘as.adjMAT’
    .pFormula2: no visible global function definition for ‘uniquePrim’
    .parse.change.list : .foo: no visible global function definition for
     ‘rhsf2list’
    .parse.change.list : .foo: no visible binding for global variable
     ‘names2pairs’
    .parse.change.list: no visible global function definition for
     ‘matchPrim’
    .pms2ghkParms: no visible global function definition for ‘solveSPD’
    .pms2ghkParms: no visible global function definition for ‘colSumsPrim’
    .reduceSet : <anonymous>: no visible global function definition for
     ‘combn’
    .reduceSet: no visible global function definition for ‘isin’
    .rhsf2char: no visible global function definition for ‘rhsf2list’
    .set.interactions : <anonymous>: no visible global function definition
     for ‘combn’
    .set.interactions: no visible global function definition for
     ‘removeRedundant’
    .split.by: no visible global function definition for ‘xtabs’
    .subtract.fix: no visible global function definition for ‘pairs2num’
    .subtract.fix: no visible global function definition for ‘na.omit’
    .subtract.fix: no visible global function definition for ‘matchPrim’
    .update.ghkParms: no visible global function definition for ‘tableOp2’
    .weak.datamarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.datamarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.mix: no visible global function definition for
     ‘nextCell’
    .weak.modelmarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.modelmarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.mix: no visible global function definition for
     ‘nextCell’
    CGstats_internal: no visible global function definition for ‘xtabs’
    CGstats_internal: no visible global function definition for ‘cov.wt’
    backward: no visible global function definition for ‘isGSD_glist’
    backward: no visible global function definition for ‘glist2adjMAT’
    backward: no visible global function definition for ‘pairs2num’
    backward: no visible global function definition for ‘update’
    ciTest_df: no visible global function definition for ‘rhsFormula2list’
    ciTest_df: no visible global function definition for ‘uniquePrim’
    ciTest_df: no visible global function definition for ‘xtabs’
    ciTest_df: no visible global function definition for ‘cov.wt’
    ciTest_mvn: no visible global function definition for ‘rhsFormula2list’
    ciTest_ordinal: no visible global function definition for
     ‘rhsFormula2list’
    ciTest_table: no visible global function definition for ‘tableMargin’
    ciTest_table: no visible global function definition for
     ‘rhsFormula2list’
    cmod: no visible global function definition for ‘cov.wt’
    compareGC: no visible global function definition for ‘unlistPrim’
    compareGC : <anonymous>: no visible global function definition for
     ‘isin’
    compareGCpairs: no visible binding for global variable ‘combnPrim’
    compareModels.iModel: no visible global function definition for
     ‘logLik’
    compareModels.iModel: no visible global function definition for
     ‘pchisq’
    dmod: no visible global function definition for ‘xtabs’
    dmod: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘ugList’
    effloglin: no visible global function definition for ‘triangulateMAT’
    effloglin: no visible global function definition for ‘ripMAT’
    effloglin : <anonymous>: no visible global function definition for
     ‘tableMargin’
    effloglin: no visible global function definition for ‘uniquePrim’
    effloglin : <anonymous>: no visible global function definition for
     ‘parray’
    effloglin: no visible global function definition for ‘propagateLS’
    effloglin: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘tableOp2’
    effloglin: no visible global function definition for ‘unlistPrim’
    effloglin: no visible global function definition for ‘tableOp’
    effloglin: no visible global function definition for ‘tablePerm’
    fit.dModel: no visible global function definition for ‘loglin’
    fit.dModel: no visible global function definition for ‘ripMAT’
    fit.dModel: no visible global function definition for ‘glist2adjMAT’
    fit.mModel: no visible global function definition for ‘loglin’
    fit.mModel: no visible global function definition for ‘rowSumsPrim’
    fit.mModel: no visible global function definition for ‘colwiseProd’
    forward: no visible global function definition for ‘isGSD_glist’
    forward: no visible global function definition for ‘glist2adjMAT’
    forward: no visible global function definition for ‘pairs2num’
    forward: no visible global function definition for ‘update’
    getEdges.graphNEL: no visible global function definition for
     ‘as.adjMAT’
    getEdges.list: no visible global function definition for ‘glist2adjMAT’
    getInEdgesMAT: no visible global function definition for ‘edgeListMAT’
    getInEdgesMAT: no visible global function definition for ‘mcsmarkedMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘nonEdgeListMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘mcsmarkedMAT’
    ggmfit: no visible global function definition for ‘uniquePrim’
    ggmfitr: no visible global function definition for ‘ellK’
    ghk2phkParms: no visible global function definition for ‘solveSPD’
    ghk2phkParms: no visible global function definition for ‘colSumsPrim’
    iplot.iModel: no visible global function definition for ‘ugList’
    iplot.iModel: no visible global function definition for ‘plot’
    loglinDecDim: no visible global function definition for ‘ripMAT’
    loglinDecDim: no visible global function definition for ‘glist2adjMAT’
    mmod: no visible global function definition for ‘intersectPrim’
    phk2ghkParms: no visible global function definition for ‘solveSPD’
    phk2ghkParms: no visible global function definition for ‘colSumsPrim’
    phk2pmsParms: no visible global function definition for ‘solveSPD’
    plot.iModel: no visible global function definition for ‘ugList’
    plot.iModel: no visible global function definition for ‘plot’
    pms2phkParms: no visible global function definition for ‘solveSPD’
    print.compareiModels: no visible global function definition for ‘str’
    print.iModelsummary: no visible global function definition for ‘str’
    stepwise.iModel: no visible global function definition for
     ‘isGSD_glist’
    summary.citest: no visible global function definition for ‘str’
    summary.iModel: no visible global function definition for ‘getCliques’
    summary.iModel: no visible global function definition for ‘ugList’
    testInEdges: no visible global function definition for ‘glist2adjMAT’
    testOutEdges: no visible global function definition for ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testadd.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for ‘subsetof’
    testadd.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testadd.iModel: no visible global function definition for ‘mcsMAT’
    testadd.iModel: no visible global function definition for ‘isin’
    testadd.iModel: no visible global function definition for ‘setdiffPrim’
    testadd.iModel: no visible global function definition for ‘update’
    testdelete.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testdelete.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testdelete.iModel: no visible global function definition for ‘subsetof’
    testdelete.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testdelete.iModel: no visible global function definition for ‘mcsMAT’
    testdelete.iModel: no visible global function definition for ‘isin’
    testdelete.iModel: no visible global function definition for
     ‘setdiffPrim’
    testdelete.iModel: no visible global function definition for ‘update’
    coerce,cModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,cModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,cModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,dModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,dModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,dModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,mModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,mModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,mModel-matrix: no visible global function definition for
     ‘ugList’
    Undefined global functions or variables:
     addmargins as.adjMAT as.formula colSumsPrim colwiseProd combn
     combnPrim cov.wt edgeListMAT ellK ftable getCliques glist2adjMAT
     intersectPrim isGSD_glist isin logLik loglin matchPrim maxCliqueMAT
     mcsMAT mcsmarkedMAT na.omit names2pairs nextCell nonEdgeListMAT
     outerPrim pairs2num parray pchisq pf plot pnorm propagateLS r2dtable
     removeRedundant rhsFormula2list rhsf2list ripMAT rowSumsPrim
     setdiffPrim slice2entry solveSPD str subsetof tableMargin tableOp
     tableOp2 tablePerm triangulateMAT ugList uniquePrim unlistPrim update
     xtabs
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "addmargins", "as.formula", "cov.wt", "ftable",
     "logLik", "loglin", "na.omit", "pchisq", "pf", "pnorm",
     "r2dtable", "update", "xtabs")
     importFrom("utils", "combn", "str")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1-17
Check: R code for possible problems
Result: NOTE
    .CGstats2initpms: no visible global function definition for
     ‘rowSumsPrim’
    .CI_MC_prim: no visible global function definition for ‘tableMargin’
    .CI_MC_prim: no visible global function definition for ‘outerPrim’
    .CI_MC_prim: no visible global function definition for ‘colSumsPrim’
    .CI_X2_prim: no visible global function definition for ‘tableMargin’
    .CI_X2_prim: no visible global function definition for ‘tablePerm’
    .CI_X2_prim: no visible global function definition for ‘tableOp’
    .CI_X2_prim: no visible global function definition for ‘rowSumsPrim’
    .add.edge_glist: no visible global function definition for ‘uniquePrim’
    .add.edge_glist: no visible global function definition for
     ‘intersectPrim’
    .add.edge_glist: no visible global function definition for
     ‘removeRedundant’
    .add.term: no visible global function definition for ‘removeRedundant’
    .add.term_glist: no visible global function definition for ‘isin’
    .add.term_glist: no visible global function definition for
     ‘removeRedundant’
    .aedge_glist: no visible global function definition for ‘uniquePrim’
    .aedge_glist: no visible global function definition for ‘intersectPrim’
    .aedge_glist: no visible global function definition for
     ‘removeRedundant’
    .aterm_glist: no visible global function definition for ‘isin’
    .aterm_glist: no visible global function definition for
     ‘removeRedundant’
    .cModel_finalize: no visible global function definition for ‘ugList’
    .cModel_finalize: no visible global function definition for
     ‘maxCliqueMAT’
    .cModel_finalize: no visible global function definition for ‘mcsMAT’
    .check.glist: no visible global function definition for ‘unlistPrim’
    .check.glist: no visible global function definition for ‘uniquePrim’
    .cov.wt: no visible global function definition for ‘colSumsPrim’
    .dModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .dModel_sparsity: no visible global function definition for
     ‘tableMargin’
    .delete.term: no visible global function definition for ‘isin’
    .delete.term: no visible global function definition for
     ‘removeRedundant’
    .drop.term_glist: no visible global function definition for ‘subsetof’
    .drop.term_glist: no visible global function definition for ‘combnPrim’
    .drop.term_glist: no visible global function definition for
     ‘unlistPrim’
    .drop.term_glist : <anonymous>: no visible global function definition
     for ‘subsetof’
    .drop.term_glist: no visible global function definition for
     ‘removeRedundant’
    .dterm_glist: no visible global function definition for ‘subsetof’
    .dterm_glist: no visible global function definition for ‘combnPrim’
    .dterm_glist: no visible global function definition for ‘unlistPrim’
    .dterm_glist : <anonymous>: no visible global function definition for
     ‘subsetof’
    .dterm_glist: no visible global function definition for
     ‘removeRedundant’
    .extendCGstats: no visible global function definition for ‘rowSumsPrim’
    .ghk2pmsParms: no visible global function definition for ‘solveSPD’
    .ghk2pmsParms: no visible global function definition for ‘colSumsPrim’
    .loglinDecDim: no visible global function definition for ‘tableMargin’
    .loglinDim: no visible global function definition for ‘unlistPrim’
    .loglinGenDim: no visible global function definition for ‘unlistPrim’
    .mModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .mModel_logLpms: no visible global function definition for ‘solveSPD’
    .mModelinfoPrimitive: no visible global function definition for
     ‘removeRedundant’
    .mmod_dimensionPrimitive: no visible global function definition for
     ‘glist2adjMAT’
    .normalize.ghkParms: no visible global function definition for
     ‘solveSPD’
    .normalize.ghkParms: no visible global function definition for
     ‘colSumsPrim’
    .pFormula2: no visible global function definition for ‘rhsFormula2list’
    .pFormula2: no visible global function definition for ‘maxCliqueMAT’
    .pFormula2: no visible global function definition for ‘as.adjMAT’
    .pFormula2: no visible global function definition for ‘uniquePrim’
    .parse.change.list : .foo: no visible global function definition for
     ‘rhsf2list’
    .parse.change.list : .foo: no visible binding for global variable
     ‘names2pairs’
    .parse.change.list: no visible global function definition for
     ‘matchPrim’
    .pms2ghkParms: no visible global function definition for ‘solveSPD’
    .pms2ghkParms: no visible global function definition for ‘colSumsPrim’
    .reduceSet: no visible global function definition for ‘isin’
    .rhsf2char: no visible global function definition for ‘rhsf2list’
    .set.interactions: no visible global function definition for
     ‘removeRedundant’
    .subtract.fix: no visible global function definition for ‘pairs2num’
    .subtract.fix: no visible global function definition for ‘matchPrim’
    .update.ghkParms: no visible global function definition for ‘tableOp2’
    .weak.datamarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.datamarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.mix: no visible global function definition for
     ‘nextCell’
    .weak.modelmarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.modelmarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.mix: no visible global function definition for
     ‘nextCell’
    backward: no visible global function definition for ‘isGSD_glist’
    backward: no visible global function definition for ‘glist2adjMAT’
    backward: no visible global function definition for ‘pairs2num’
    ciTest_df: no visible global function definition for ‘rhsFormula2list’
    ciTest_df: no visible global function definition for ‘uniquePrim’
    ciTest_mvn: no visible global function definition for ‘rhsFormula2list’
    ciTest_ordinal: no visible global function definition for
     ‘rhsFormula2list’
    ciTest_table: no visible global function definition for ‘tableMargin’
    ciTest_table: no visible global function definition for
     ‘rhsFormula2list’
    compareGC: no visible global function definition for ‘unlistPrim’
    compareGC : <anonymous>: no visible global function definition for
     ‘isin’
    compareGCpairs: no visible binding for global variable ‘combnPrim’
    dmod: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘ugList’
    effloglin: no visible global function definition for ‘triangulateMAT’
    effloglin: no visible global function definition for ‘ripMAT’
    effloglin : <anonymous>: no visible global function definition for
     ‘tableMargin’
    effloglin: no visible global function definition for ‘uniquePrim’
    effloglin : <anonymous>: no visible global function definition for
     ‘parray’
    effloglin: no visible global function definition for ‘propagateLS’
    effloglin: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘tableOp2’
    effloglin: no visible global function definition for ‘unlistPrim’
    effloglin: no visible global function definition for ‘tableOp’
    effloglin: no visible global function definition for ‘tablePerm’
    fit.dModel: no visible global function definition for ‘ripMAT’
    fit.dModel: no visible global function definition for ‘glist2adjMAT’
    fit.mModel: no visible global function definition for ‘rowSumsPrim’
    fit.mModel: no visible global function definition for ‘colwiseProd’
    forward: no visible global function definition for ‘isGSD_glist’
    forward: no visible global function definition for ‘glist2adjMAT’
    forward: no visible global function definition for ‘pairs2num’
    getEdges.graphNEL: no visible global function definition for
     ‘as.adjMAT’
    getEdges.list: no visible global function definition for ‘glist2adjMAT’
    getInEdgesMAT: no visible global function definition for ‘edgeListMAT’
    getInEdgesMAT: no visible global function definition for ‘mcsmarkedMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘nonEdgeListMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘mcsmarkedMAT’
    ggmfit: no visible global function definition for ‘uniquePrim’
    ggmfitr: no visible global function definition for ‘ellK’
    ghk2phkParms: no visible global function definition for ‘solveSPD’
    ghk2phkParms: no visible global function definition for ‘colSumsPrim’
    iplot.iModel: no visible global function definition for ‘ugList’
    loglinDecDim: no visible global function definition for ‘ripMAT’
    loglinDecDim: no visible global function definition for ‘glist2adjMAT’
    mmod: no visible global function definition for ‘intersectPrim’
    phk2ghkParms: no visible global function definition for ‘solveSPD’
    phk2ghkParms: no visible global function definition for ‘colSumsPrim’
    phk2pmsParms: no visible global function definition for ‘solveSPD’
    plot.iModel: no visible global function definition for ‘ugList’
    pms2phkParms: no visible global function definition for ‘solveSPD’
    stepwise.iModel: no visible global function definition for
     ‘isGSD_glist’
    summary.iModel: no visible global function definition for ‘getCliques’
    summary.iModel: no visible global function definition for ‘ugList’
    testInEdges: no visible global function definition for ‘glist2adjMAT’
    testOutEdges: no visible global function definition for ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testadd.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for ‘subsetof’
    testadd.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testadd.iModel: no visible global function definition for ‘mcsMAT’
    testadd.iModel: no visible global function definition for ‘isin’
    testadd.iModel: no visible global function definition for ‘setdiffPrim’
    testdelete.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testdelete.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testdelete.iModel: no visible global function definition for ‘subsetof’
    testdelete.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testdelete.iModel: no visible global function definition for ‘mcsMAT’
    testdelete.iModel: no visible global function definition for ‘isin’
    testdelete.iModel: no visible global function definition for
     ‘setdiffPrim’
    coerce,cModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,cModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,cModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,dModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,dModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,dModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,mModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,mModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,mModel-matrix: no visible global function definition for
     ‘ugList’
    Undefined global functions or variables:
     as.adjMAT colSumsPrim colwiseProd combnPrim edgeListMAT ellK
     getCliques glist2adjMAT intersectPrim isGSD_glist isin matchPrim
     maxCliqueMAT mcsMAT mcsmarkedMAT names2pairs nextCell nonEdgeListMAT
     outerPrim pairs2num parray propagateLS removeRedundant
     rhsFormula2list rhsf2list ripMAT rowSumsPrim setdiffPrim slice2entry
     solveSPD subsetof tableMargin tableOp tableOp2 tablePerm
     triangulateMAT ugList uniquePrim unlistPrim
Flavor: r-devel-osx-x86_64-clang

Version: 0.1-17
Check: R code for possible problems
Result: NOTE
    .CGstats2initpms: no visible global function definition for
     ‘rowSumsPrim’
    .CI_MC_prim: no visible global function definition for ‘tableMargin’
    .CI_MC_prim: no visible global function definition for ‘outerPrim’
    .CI_MC_prim: no visible global function definition for ‘colSumsPrim’
    .CI_X2_prim: no visible global function definition for ‘tableMargin’
    .CI_X2_prim: no visible global function definition for ‘tablePerm’
    .CI_X2_prim: no visible global function definition for ‘tableOp’
    .CI_X2_prim: no visible global function definition for ‘rowSumsPrim’
    .add.edge_glist: no visible global function definition for ‘uniquePrim’
    .add.edge_glist: no visible global function definition for
     ‘intersectPrim’
    .add.edge_glist: no visible global function definition for
     ‘removeRedundant’
    .add.term: no visible global function definition for ‘removeRedundant’
    .add.term_glist: no visible global function definition for ‘isin’
    .add.term_glist: no visible global function definition for
     ‘removeRedundant’
    .aedge_glist: no visible global function definition for ‘uniquePrim’
    .aedge_glist: no visible global function definition for ‘intersectPrim’
    .aedge_glist: no visible global function definition for
     ‘removeRedundant’
    .aterm_glist: no visible global function definition for ‘isin’
    .aterm_glist: no visible global function definition for
     ‘removeRedundant’
    .cModel_finalize: no visible global function definition for ‘ugList’
    .cModel_finalize: no visible global function definition for
     ‘maxCliqueMAT’
    .cModel_finalize: no visible global function definition for ‘mcsMAT’
    .check.glist: no visible global function definition for ‘unlistPrim’
    .check.glist: no visible global function definition for ‘uniquePrim’
    .cov.wt: no visible global function definition for ‘colSumsPrim’
    .dModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .dModel_sparsity: no visible global function definition for
     ‘tableMargin’
    .delete.term: no visible global function definition for ‘isin’
    .delete.term: no visible global function definition for
     ‘removeRedundant’
    .drop.term_glist: no visible global function definition for ‘subsetof’
    .drop.term_glist: no visible global function definition for ‘combnPrim’
    .drop.term_glist: no visible global function definition for
     ‘unlistPrim’
    .drop.term_glist : <anonymous>: no visible global function definition
     for ‘subsetof’
    .drop.term_glist: no visible global function definition for
     ‘removeRedundant’
    .dterm_glist: no visible global function definition for ‘subsetof’
    .dterm_glist: no visible global function definition for ‘combnPrim’
    .dterm_glist: no visible global function definition for ‘unlistPrim’
    .dterm_glist : <anonymous>: no visible global function definition for
     ‘subsetof’
    .dterm_glist: no visible global function definition for
     ‘removeRedundant’
    .extendCGstats: no visible global function definition for ‘rowSumsPrim’
    .ghk2pmsParms: no visible global function definition for ‘solveSPD’
    .ghk2pmsParms: no visible global function definition for ‘colSumsPrim’
    .loglinDecDim: no visible global function definition for ‘tableMargin’
    .loglinDim: no visible global function definition for ‘unlistPrim’
    .loglinGenDim: no visible global function definition for ‘unlistPrim’
    .mModel_finalize: no visible global function definition for
     ‘isGSD_glist’
    .mModel_logLpms: no visible global function definition for ‘solveSPD’
    .mModelinfoPrimitive: no visible global function definition for
     ‘removeRedundant’
    .mmod_dimensionPrimitive: no visible global function definition for
     ‘glist2adjMAT’
    .normalize.ghkParms: no visible global function definition for
     ‘solveSPD’
    .normalize.ghkParms: no visible global function definition for
     ‘colSumsPrim’
    .pFormula2: no visible global function definition for ‘rhsFormula2list’
    .pFormula2: no visible global function definition for ‘maxCliqueMAT’
    .pFormula2: no visible global function definition for ‘as.adjMAT’
    .pFormula2: no visible global function definition for ‘uniquePrim’
    .parse.change.list : .foo: no visible global function definition for
     ‘rhsf2list’
    .parse.change.list : .foo: no visible binding for global variable
     ‘names2pairs’
    .parse.change.list: no visible global function definition for
     ‘matchPrim’
    .pms2ghkParms: no visible global function definition for ‘solveSPD’
    .pms2ghkParms: no visible global function definition for ‘colSumsPrim’
    .reduceSet: no visible global function definition for ‘isin’
    .rhsf2char: no visible global function definition for ‘rhsf2list’
    .set.interactions: no visible global function definition for
     ‘removeRedundant’
    .subtract.fix: no visible global function definition for ‘pairs2num’
    .subtract.fix: no visible global function definition for ‘matchPrim’
    .update.ghkParms: no visible global function definition for ‘tableOp2’
    .weak.datamarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.datamarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.datamarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.datamarg.mix: no visible global function definition for
     ‘nextCell’
    .weak.modelmarg.cont: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.disc: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘tableMargin’
    .weak.modelmarg.mix: no visible global function definition for
     ‘slice2entry’
    .weak.modelmarg.mix: no visible global function definition for
     ‘rowSumsPrim’
    .weak.modelmarg.mix: no visible global function definition for
     ‘nextCell’
    backward: no visible global function definition for ‘isGSD_glist’
    backward: no visible global function definition for ‘glist2adjMAT’
    backward: no visible global function definition for ‘pairs2num’
    ciTest_df: no visible global function definition for ‘rhsFormula2list’
    ciTest_df: no visible global function definition for ‘uniquePrim’
    ciTest_mvn: no visible global function definition for ‘rhsFormula2list’
    ciTest_ordinal: no visible global function definition for
     ‘rhsFormula2list’
    ciTest_table: no visible global function definition for ‘tableMargin’
    ciTest_table: no visible global function definition for
     ‘rhsFormula2list’
    compareGC: no visible global function definition for ‘unlistPrim’
    compareGC : <anonymous>: no visible global function definition for
     ‘isin’
    compareGCpairs: no visible binding for global variable ‘combnPrim’
    dmod: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘ugList’
    effloglin: no visible global function definition for ‘triangulateMAT’
    effloglin: no visible global function definition for ‘ripMAT’
    effloglin : <anonymous>: no visible global function definition for
     ‘tableMargin’
    effloglin: no visible global function definition for ‘uniquePrim’
    effloglin : <anonymous>: no visible global function definition for
     ‘parray’
    effloglin: no visible global function definition for ‘propagateLS’
    effloglin: no visible global function definition for ‘tableMargin’
    effloglin: no visible global function definition for ‘tableOp2’
    effloglin: no visible global function definition for ‘unlistPrim’
    effloglin: no visible global function definition for ‘tableOp’
    effloglin: no visible global function definition for ‘tablePerm’
    fit.dModel: no visible global function definition for ‘ripMAT’
    fit.dModel: no visible global function definition for ‘glist2adjMAT’
    fit.mModel: no visible global function definition for ‘rowSumsPrim’
    fit.mModel: no visible global function definition for ‘colwiseProd’
    forward: no visible global function definition for ‘isGSD_glist’
    forward: no visible global function definition for ‘glist2adjMAT’
    forward: no visible global function definition for ‘pairs2num’
    getEdges.graphNEL: no visible global function definition for
     ‘as.adjMAT’
    getEdges.list: no visible global function definition for ‘glist2adjMAT’
    getInEdgesMAT: no visible global function definition for ‘edgeListMAT’
    getInEdgesMAT: no visible global function definition for ‘mcsmarkedMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘nonEdgeListMAT’
    getOutEdgesMAT: no visible global function definition for
     ‘mcsmarkedMAT’
    ggmfit: no visible global function definition for ‘uniquePrim’
    ggmfitr: no visible global function definition for ‘ellK’
    ghk2phkParms: no visible global function definition for ‘solveSPD’
    ghk2phkParms: no visible global function definition for ‘colSumsPrim’
    iplot.iModel: no visible global function definition for ‘ugList’
    loglinDecDim: no visible global function definition for ‘ripMAT’
    loglinDecDim: no visible global function definition for ‘glist2adjMAT’
    mmod: no visible global function definition for ‘intersectPrim’
    phk2ghkParms: no visible global function definition for ‘solveSPD’
    phk2ghkParms: no visible global function definition for ‘colSumsPrim’
    phk2pmsParms: no visible global function definition for ‘solveSPD’
    plot.iModel: no visible global function definition for ‘ugList’
    pms2phkParms: no visible global function definition for ‘solveSPD’
    stepwise.iModel: no visible global function definition for
     ‘isGSD_glist’
    summary.iModel: no visible global function definition for ‘getCliques’
    summary.iModel: no visible global function definition for ‘ugList’
    testInEdges: no visible global function definition for ‘glist2adjMAT’
    testOutEdges: no visible global function definition for ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testadd.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testadd.iModel: no visible global function definition for ‘subsetof’
    testadd.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testadd.iModel: no visible global function definition for ‘mcsMAT’
    testadd.iModel: no visible global function definition for ‘isin’
    testadd.iModel: no visible global function definition for ‘setdiffPrim’
    testdelete.iModel: no visible global function definition for
     ‘rhsFormula2list’
    testdelete.iModel: no visible global function definition for
     ‘glist2adjMAT’
    testdelete.iModel: no visible global function definition for ‘subsetof’
    testdelete.iModel: no visible global function definition for
     ‘maxCliqueMAT’
    testdelete.iModel: no visible global function definition for ‘mcsMAT’
    testdelete.iModel: no visible global function definition for ‘isin’
    testdelete.iModel: no visible global function definition for
     ‘setdiffPrim’
    coerce,cModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,cModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,cModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,dModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,dModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,dModel-matrix: no visible global function definition for
     ‘ugList’
    coerce,mModel-graphNEL: no visible global function definition for
     ‘ugList’
    coerce,mModel-igraph: no visible global function definition for
     ‘ugList’
    coerce,mModel-matrix: no visible global function definition for
     ‘ugList’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64