CRAN Package Check Results for Package gamboostLSS

Last updated on 2021-10-17 02:50:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-5 12.06 190.82 202.88 WARN
r-devel-linux-x86_64-debian-gcc 2.0-5 8.61 137.60 146.21 WARN
r-devel-linux-x86_64-fedora-clang 2.0-5 252.17 WARN
r-devel-linux-x86_64-fedora-gcc 2.0-5 239.39 WARN
r-devel-windows-x86_64 2.0-5 15.00 280.00 295.00 OK
r-devel-windows-x86_64-gcc10-UCRT 2.0-5 WARN
r-patched-linux-x86_64 2.0-5 13.85 187.40 201.25 WARN
r-patched-solaris-x86 2.0-5 363.30 NOTE --no-vignettes
r-release-linux-x86_64 2.0-5 9.48 186.88 196.36 WARN
r-release-macos-arm64 2.0-5 OK
r-release-macos-x86_64 2.0-5 OK
r-release-windows-ix86+x86_64 2.0-5 16.00 345.00 361.00 OK
r-oldrel-macos-x86_64 2.0-5 OK
r-oldrel-windows-ix86+x86_64 2.0-5 23.00 376.00 399.00 OK

Check Details

Version: 2.0-5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'R2BayesX'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'gamboostLSS_Tutorial.Rnw' using Sweave
    Loading required package: R2BayesX
    Installing package into '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages'
    (as 'lib' is unspecified)
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 1 (label = init)
    Error in install.packages("R2BayesX", repos = repos) :
     unable to install packages
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave
    Loading required package: R2BayesX
    Installing package into '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages'
    (as 'lib' is unspecified)
    
    Error: processing vignette ‘gamboostLSS_Tutorial.Rnw’ failed with diagnostics:
     chunk 1 (label = init)
    Error in install.packages("R2BayesX", repos = repos) :
     unable to install packages
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave
    Loading required package: R2BayesX
    Installing package into '/data/gannet/ripley/R/packages/tests-clang/gamboostLSS.Rcheck'
    (as 'lib' is unspecified)
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 11 (label = india_stunting1)
    Error in library("R2BayesX") : there is no package called 'R2BayesX'
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave
    Loading required package: R2BayesX
    Installing package into '/data/gannet/ripley/R/packages/tests-devel/gamboostLSS.Rcheck'
    (as 'lib' is unspecified)
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 11 (label = india_stunting1)
    Error in library("R2BayesX") : there is no package called 'R2BayesX'
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.0-5
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in 'gamboostLSS_Tutorial.Rnw'
    
    > options(prompt = "R> ", continue = "+ ", width = 76,
    + useFancyQuotes = FALSE)
    
    > repos <- "http://cran.at.r-project.org"
    
    > suppressWarnings(pd <- packageDescription("gamboostLSS"))
    
    > if (all(is.na(pd))) {
    + install.packages("gamboostLSS", repos = repos)
    + pd <- packageDescription("gamboostLSS")
    + } else {
    + if (compar .... [TRUNCATED]
    
    > suppressWarnings(if (!require("R2BayesX")) install.packages("R2BayesX",
    + repos = repos))
    Loading required package: R2BayesX
    Installing package into 'C:/r_packages/pkgcheck/CRAN/gamboostLSS/gamboostLSS.Rcheck'
    (as 'lib' is unspecified)
    
    > suppressWarnings(rm("india"))
    
    > require("gamboostLSS")
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    > if (!file.exists("graphics")) dir.create("graphics")
    
    > if (!file.exists("cvrisk")) dir.create("cvrisk")
    
    > library("gamboostLSS")
    
    > set.seed(1907)
    
    > n <- 150
    
    > x1 <- rnorm(n)
    
    > x2 <- rnorm(n)
    
    > x3 <- rnorm(n)
    
    > toydata <- data.frame(x1 = x1, x2 = x2, x3 = x3)
    
    > toydata$y <- rnorm(n, mean = 1 + 2 * x1 - x2, sd = exp(0.5 -
    + 0.25 * x1 + 0.5 * x3))
    
    > lmLSS <- glmboostLSS(y ~ x1 + x2 + x3, data = toydata)
    
    > coef(lmLSS, off2int = TRUE)
    $mu
    (Intercept) x1 x2
     0.8139756 1.6411143 -0.3905382
    
    $sigma
    (Intercept) x1 x2 x3
     0.62351136 -0.22308703 -0.02128006 0.30850745
    
    
    > par(mfrow = c(1, 2), mar = c(4, 4, 2, 5))
    
    > plot(lmLSS, off2int = TRUE)
    
    > muFit <- fitted(lmLSS, parameter = "mu")
    
    > rbind(muFit, truth = 1 + 2 * x1 - x2)[, 1:5]
     1 2 3 4 5
    muFit -3.243757 -0.6727116 0.8922116 1.049360 0.8499387
    truth -4.331456 -0.8519794 0.7208595 1.164517 1.1033806
    
    > sigmaFit <- fitted(lmLSS, parameter = "sigma", type = "response")[,
    + 1]
    
    > rbind(sigmaFit, truth = exp(0.5 - 0.25 * x1 + 0.5 *
    + x3))[, 1:5]
     1 2 3 4 5
    sigmaFit 2.613536 1.469919 1.503953 2.225158 2.527370
    truth 2.260658 1.017549 1.221171 2.261453 2.684958
    
    > data("india")
    
    > data("india.bnd")
    
    > names(india)
    [1] "stunting" "cbmi" "cage" "mbmi" "mage"
    [6] "mcdist" "mcdist_lab"
    
    > library("R2BayesX")
    
     When sourcing 'gamboostLSS_Tutorial.R':
    Error: there is no package called 'R2BayesX'
    Execution halted
    
     'gamboostLSS_Tutorial.Rnw' using 'UTF-8'... failed
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2.0-5
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building 'gamboostLSS_Tutorial.Rnw' using Sweave
    Loading required package: R2BayesX
    Installing package into 'C:/r_packages/pkgcheck/CRAN/gamboostLSS/gamboostLSS.Rcheck'
    (as 'lib' is unspecified)
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 11 (label = india_stunting1)
    Error in library("R2BayesX") : there is no package called 'R2BayesX'
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave
    Loading required package: R2BayesX
    Installing package into '/tmp/RtmpCMhGUS/RLIBS_3605560209ae'
    (as 'lib' is unspecified)
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 11 (label = india_stunting1)
    Error in library("R2BayesX") : there is no package called 'R2BayesX'
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 2.0-5
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘R2BayesX’
Flavor: r-patched-solaris-x86

Version: 2.0-5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gamboostLSS_Tutorial.Rnw’ using Sweave
    Loading required package: R2BayesX
    Installing package into '/tmp/RtmpN7oddO/RLIBS_6c0d729fab5a'
    (as 'lib' is unspecified)
    Loading required package: gamboostLSS
    Loading required package: mboost
    Loading required package: parallel
    Loading required package: stabs
    
    Attaching package: 'gamboostLSS'
    
    The following object is masked from 'package:stats':
    
     model.weights
    
    
    Error: processing vignette 'gamboostLSS_Tutorial.Rnw' failed with diagnostics:
     chunk 11 (label = india_stunting1)
    Error in library("R2BayesX") : there is no package called 'R2BayesX'
    
    --- failed re-building 'gamboostLSS_Tutorial.Rnw'
    
    SUMMARY: processing the following file failed:
     'gamboostLSS_Tutorial.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64