CRAN Package Check Results for Package gcmr

Last updated on 2016-09-26 20:49:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.5 5.37 65.25 70.62 NOTE
r-devel-linux-x86_64-debian-gcc 0.7.5 5.19 63.28 68.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.7.5 138.65 NOTE
r-devel-linux-x86_64-fedora-gcc 0.7.5 135.47 NOTE
r-devel-macos-x86_64-clang 0.7.5 105.65 NOTE
r-devel-windows-ix86+x86_64 0.7.5 22.00 207.00 229.00 NOTE
r-patched-linux-x86_64 0.7.5 5.26 64.75 70.01 NOTE
r-patched-solaris-sparc 0.7.5 13.70 ERROR
r-patched-solaris-x86 0.7.5 2.70 ERROR
r-release-linux-x86_64 0.7.5 5.30 65.82 71.13 NOTE
r-release-osx-x86_64-mavericks 0.7.5 WARN
r-release-windows-ix86+x86_64 0.7.5 27.00 219.00 246.00 NOTE
r-oldrel-windows-ix86+x86_64 0.7.5 25.00 205.00 230.00 OK

Check Details

Version: 0.7.5
Check: R code for possible problems
Result: NOTE
    Gamma.marg: no visible global function definition for ‘Gamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘coef’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘dgamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘pgamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘qgamma’
    arma.cormat : <anonymous>: no visible global function definition for
     ‘ARMAacf’
    beta.marg: no visible global function definition for ‘binomial’
    beta.marg : <anonymous>: no visible global function definition for
     ‘coef’
    beta.marg : <anonymous>: no visible global function definition for
     ‘dbeta’
    beta.marg : <anonymous>: no visible global function definition for
     ‘pbeta’
    beta.marg : <anonymous>: no visible global function definition for
     ‘qbeta’
    binomial.marg: no visible global function definition for ‘binomial’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘coef’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘dbinom’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘pbinom’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘qbinom’
    bn.marg: no visible global function definition for ‘binomial’
    bn.marg : <anonymous>: no visible global function definition for ‘coef’
    bn.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    bn.marg : <anonymous>: no visible global function definition for
     ‘dbinom’
    bn.marg : <anonymous>: no visible global function definition for
     ‘pbinom’
    bn.marg : <anonymous>: no visible global function definition for
     ‘qbinom’
    gaussian.marg: no visible global function definition for ‘gaussian’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘sd’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘coef’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘dnorm’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘pnorm’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘qnorm’
    gcmr: no visible binding for global variable ‘na.pass’
    gcmr: no visible global function definition for ‘as.formula’
    gcmr: no visible global function definition for ‘terms’
    gcmr: no visible global function definition for ‘delete.response’
    gcmr: no visible global function definition for ‘model.response’
    gcmr: no visible global function definition for ‘model.matrix’
    gcmr: no visible global function definition for ‘model.offset’
    gcmr: no visible global function definition for ‘.getXlevels’
    gcmr.opt: no visible global function definition for ‘optim’
    gcmr.options: no visible global function definition for ‘runif’
    gcmr.options : opt: no visible global function definition for ‘optim’
    gs.marg: no visible global function definition for ‘gaussian’
    gs.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    gs.marg : <anonymous>: no visible global function definition for ‘sd’
    gs.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    gs.marg : <anonymous>: no visible global function definition for ‘coef’
    gs.marg : <anonymous>: no visible global function definition for
     ‘dnorm’
    gs.marg : <anonymous>: no visible global function definition for
     ‘pnorm’
    gs.marg : <anonymous>: no visible global function definition for
     ‘qnorm’
    matern.cormat : <anonymous>: no visible global function definition for
     ‘median’
    model.matrix.gcmr: no visible global function definition for
     ‘model.matrix’
    model.matrix.gcmr: no visible global function definition for
     ‘model.frame’
    nb.marg: no visible global function definition for ‘poisson’
    nb.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    nb.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    nb.marg : <anonymous>: no visible global function definition for ‘coef’
    nb.marg : <anonymous>: no visible global function definition for
     ‘dnbinom’
    nb.marg : <anonymous>: no visible global function definition for
     ‘pnbinom’
    nb.marg : <anonymous>: no visible global function definition for
     ‘qnbinom’
    negbin.marg: no visible global function definition for ‘poisson’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘coef’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘dnbinom’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘pnbinom’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘qnbinom’
    plot.gcmr: no visible global function definition for ‘par’
    plot.gcmr: no visible global function definition for ‘dev.interactive’
    plot.gcmr: no visible global function definition for ‘residuals’
    plot.gcmr: no visible global function definition for ‘plot’
    plot.gcmr: no visible global function definition for ‘abline’
    plot.gcmr: no visible global function definition for ‘mtext’
    plot.gcmr: no visible global function definition for ‘fitted’
    plot.gcmr: no visible global function definition for ‘acf’
    plot.gcmr: no visible binding for global variable ‘na.pass’
    plot.gcmr: no visible global function definition for ‘pacf’
    poisson.marg: no visible global function definition for ‘poisson’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘coef’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘dpois’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘ppois’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘qpois’
    print.summary.gcmr: no visible global function definition for
     ‘printCoefmat’
    profile.gcmr: no visible global function definition for ‘vcov’
    profile.gcmr: no visible global function definition for ‘coef’
    profile.gcmr: no visible global function definition for
     ‘txtProgressBar’
    profile.gcmr: no visible global function definition for
     ‘setTxtProgressBar’
    profile.gcmr: no visible global function definition for ‘plot’
    profile.gcmr: no visible global function definition for ‘splinefun’
    profile.gcmr: no visible global function definition for ‘grid’
    profile.gcmr: no visible global function definition for ‘abline’
    profile.gcmr: no visible global function definition for ‘qchisq’
    ps.marg: no visible global function definition for ‘poisson’
    ps.marg : <anonymous>: no visible global function definition for ‘coef’
    ps.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    ps.marg : <anonymous>: no visible global function definition for
     ‘dpois’
    ps.marg : <anonymous>: no visible global function definition for
     ‘ppois’
    ps.marg : <anonymous>: no visible global function definition for
     ‘qpois’
    residuals.gcmr: no visible global function definition for ‘runif’
    residuals.gcmr: no visible global function definition for ‘qnorm’
    summary.gcmr: no visible global function definition for ‘vcov’
    summary.gcmr: no visible global function definition for ‘pnorm’
    summary.gcmr: no visible global function definition for ‘AIC’
    update.gcmr: no visible global function definition for ‘formula’
    update.gcmr: no visible global function definition for ‘update’
    weibull.marg: no visible global function definition for ‘Gamma’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘coef’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘dweibull’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘pweibull’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘qweibull’
    Undefined global functions or variables:
     .getXlevels AIC ARMAacf Gamma abline acf as.formula binomial coef
     dbeta dbinom delete.response dev.interactive dgamma dnbinom dnorm
     dpois dweibull fitted formula gaussian glm.fit grid median
     model.frame model.matrix model.offset model.response mtext na.pass
     optim pacf par pbeta pbinom pgamma plot pnbinom pnorm poisson ppois
     printCoefmat pweibull qbeta qbinom qchisq qgamma qnbinom qnorm qpois
     qweibull residuals runif sd setTxtProgressBar splinefun terms
     txtProgressBar update vcov
    Consider adding
     importFrom("grDevices", "dev.interactive")
     importFrom("graphics", "abline", "grid", "mtext", "par", "plot")
     importFrom("stats", ".getXlevels", "AIC", "ARMAacf", "Gamma", "acf",
     "as.formula", "binomial", "coef", "dbeta", "dbinom",
     "delete.response", "dgamma", "dnbinom", "dnorm", "dpois",
     "dweibull", "fitted", "formula", "gaussian", "glm.fit",
     "median", "model.frame", "model.matrix", "model.offset",
     "model.response", "na.pass", "optim", "pacf", "pbeta",
     "pbinom", "pgamma", "pnbinom", "pnorm", "poisson", "ppois",
     "printCoefmat", "pweibull", "qbeta", "qbinom", "qchisq",
     "qgamma", "qnbinom", "qnorm", "qpois", "qweibull",
     "residuals", "runif", "sd", "splinefun", "terms", "update",
     "vcov")
     importFrom("utils", "setTxtProgressBar", "txtProgressBar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.7.5
Check: package dependencies
Result: ERROR
    Package required but not available: ‘geoR’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.7.5
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyGamma.marg: no visible global function definition for ‘Gamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘coef’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘dgamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘pgamma’
    Gamma.marg : <anonymous>: no visible global function definition for
     ‘qgamma’
    arma.cormat : <anonymous>: no visible global function definition for
     ‘ARMAacf’
    beta.marg: no visible global function definition for ‘binomial’
    beta.marg : <anonymous>: no visible global function definition for
     ‘coef’
    beta.marg : <anonymous>: no visible global function definition for
     ‘dbeta’
    beta.marg : <anonymous>: no visible global function definition for
     ‘pbeta’
    beta.marg : <anonymous>: no visible global function definition for
     ‘qbeta’
    binomial.marg: no visible global function definition for ‘binomial’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘coef’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘dbinom’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘pbinom’
    binomial.marg : <anonymous>: no visible global function definition for
     ‘qbinom’
    bn.marg: no visible global function definition for ‘binomial’
    bn.marg : <anonymous>: no visible global function definition for ‘coef’
    bn.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    bn.marg : <anonymous>: no visible global function definition for
     ‘dbinom’
    bn.marg : <anonymous>: no visible global function definition for
     ‘pbinom’
    bn.marg : <anonymous>: no visible global function definition for
     ‘qbinom’
    gaussian.marg: no visible global function definition for ‘gaussian’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘sd’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘coef’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘dnorm’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘pnorm’
    gaussian.marg : <anonymous>: no visible global function definition for
     ‘qnorm’
    gcmr: no visible binding for global variable ‘na.pass’
    gcmr: no visible global function definition for ‘as.formula’
    gcmr: no visible global function definition for ‘terms’
    gcmr: no visible global function definition for ‘delete.response’
    gcmr: no visible global function definition for ‘model.response’
    gcmr: no visible global function definition for ‘model.matrix’
    gcmr: no visible global function definition for ‘model.offset’
    gcmr: no visible global function definition for ‘.getXlevels’
    gcmr.opt: no visible global function definition for ‘optim’
    gcmr.options: no visible global function definition for ‘runif’
    gcmr.options : opt: no visible global function definition for ‘optim’
    gs.marg: no visible global function definition for ‘gaussian’
    gs.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    gs.marg : <anonymous>: no visible global function definition for ‘sd’
    gs.marg : <anonymous>: no visible global function definition for
     ‘residuals’
    gs.marg : <anonymous>: no visible global function definition for ‘coef’
    gs.marg : <anonymous>: no visible global function definition for
     ‘dnorm’
    gs.marg : <anonymous>: no visible global function definition for
     ‘pnorm’
    gs.marg : <anonymous>: no visible global function definition for
     ‘qnorm’
    matern.cormat : <anonymous>: no visible global function definition for
     ‘median’
    model.matrix.gcmr: no visible global function definition for
     ‘model.matrix’
    model.matrix.gcmr: no visible global function definition for
     ‘model.frame’
    nb.marg: no visible global function definition for ‘poisson’
    nb.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    nb.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    nb.marg : <anonymous>: no visible global function definition for ‘coef’
    nb.marg : <anonymous>: no visible global function definition for
     ‘dnbinom’
    nb.marg : <anonymous>: no visible global function definition for
     ‘pnbinom’
    nb.marg : <anonymous>: no visible global function definition for
     ‘qnbinom’
    negbin.marg: no visible global function definition for ‘poisson’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘coef’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘dnbinom’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘pnbinom’
    negbin.marg : <anonymous>: no visible global function definition for
     ‘qnbinom’
    plot.gcmr: no visible global function definition for ‘par’
    plot.gcmr: no visible global function definition for ‘dev.interactive’
    plot.gcmr: no visible global function definition for ‘residuals’
    plot.gcmr: no visible global function definition for ‘plot’
    plot.gcmr: no visible global function definition for ‘abline’
    plot.gcmr: no visible global function definition for ‘mtext’
    plot.gcmr: no visible global function definition for ‘fitted’
    plot.gcmr: no visible global function definition for ‘acf’
    plot.gcmr: no visible binding for global variable ‘na.pass’
    plot.gcmr: no visible global function definition for ‘pacf’
    poisson.marg: no visible global function definition for ‘poisson’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘coef’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘dpois’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘ppois’
    poisson.marg : <anonymous>: no visible global function definition for
     ‘qpois’
    print.summary.gcmr: no visible global function definition for
     ‘printCoefmat’
    profile.gcmr: no visible global function definition for ‘vcov’
    profile.gcmr: no visible global function definition for ‘coef’
    profile.gcmr: no visible global function definition for
     ‘txtProgressBar’
    profile.gcmr: no visible global function definition for
     ‘setTxtProgressBar’
    profile.gcmr: no visible global function definition for ‘plot’
    profile.gcmr: no visible global function definition for ‘splinefun’
    profile.gcmr: no visible global function definition for ‘grid’
    profile.gcmr: no visible global function definition for ‘abline’
    profile.gcmr: no visible global function definition for ‘qchisq’
    ps.marg: no visible global function definition for ‘poisson’
    ps.marg : <anonymous>: no visible global function definition for ‘coef’
    ps.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    ps.marg : <anonymous>: no visible global function definition for
     ‘dpois’
    ps.marg : <anonymous>: no visible global function definition for
     ‘ppois’
    ps.marg : <anonymous>: no visible global function definition for
     ‘qpois’
    residuals.gcmr: no visible global function definition for ‘runif’
    residuals.gcmr: no visible global function definition for ‘qnorm’
    summary.gcmr: no visible global function definition for ‘vcov’
    summary.gcmr: no visible global function definition for ‘pnorm’
    summary.gcmr: no visible global function definition for ‘AIC’
    update.gcmr: no visible global function definition for ‘formula’
    update.gcmr: no visible global function definition for ‘update’
    weibull.marg: no visible global function definition for ‘Gamma’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘glm.fit’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘fitted’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘coef’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘dweibull’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘pweibull’
    weibull.marg : <anonymous>: no visible global function definition for
     ‘qweibull’
    Undefined global functions or variables:
     .getXlevels AIC ARMAacf Gamma abline acf as.formula binomial coef
     dbeta dbinom delete.response dev.interactive dgamma dnbinom dnorm
     dpois dweibull fitted formula gaussian glm.fit grid median
     model.frame model.matrix model.offset model.response mtext na.pass
     optim pacf par pbeta pbinom pgamma plot pnbinom pnorm poisson ppois
     printCoefmat pweibull qbeta qbinom qchisq qgamma qnbinom qnorm qpois
     qweibull residuals runif sd setTxtProgressBar splinefun terms
     txtProgressBar update vcov
    Consider adding
     importFrom("grDevices", "dev.interactive")
     importFrom("graphics", "abline", "grid", "mtext", "par", "plot")
     importFrom("stats", ".getXlevels", "AIC", "ARMAacf", "Gamma", "acf",
     "as.formula", "binomial", "coef", "dbeta", "dbinom",
     "delete.response", "dgamma", "dnbinom", "dnorm", "dpois",
     "dweibull", "fitted", "formula", "gaussian", "glm.fit",
     "median", "model.frame", "model.matrix", "model.offset",
     "model.response", "na.pass", "optim", "pacf", "pbeta",
     "pbinom", "pgamma", "pnbinom", "pnorm", "poisson", "ppois",
     "printCoefmat", "pweibull", "qbeta", "qbinom", "qchisq",
     "qgamma", "qnbinom", "qnorm", "qpois", "qweibull",
     "residuals", "runif", "sd", "splinefun", "terms", "update",
     "vcov")
     importFrom("utils", "setTxtProgressBar", "txtProgressBar")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.5
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks