CRAN Package Check Results for Package gemtc

Last updated on 2014-04-23 20:47:12.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6 1.57 40.74 42.31 NOTE
r-devel-linux-x86_64-debian-gcc 0.6 1.55 39.35 40.90 NOTE
r-devel-linux-x86_64-fedora-clang 0.6 80.42 NOTE
r-devel-linux-x86_64-fedora-gcc 0.6 81.22 NOTE
r-devel-osx-x86_64-clang 0.6 63.47 NOTE
r-devel-osx-x86_64-gcc 0.6 ERROR
r-devel-windows-ix86+x86_64 0.6 7.00 74.00 81.00 NOTE
r-patched-linux-x86_64 0.6 1.55 38.62 40.16 NOTE
r-patched-solaris-sparc 0.6 431.20 NOTE
r-patched-solaris-x86 0.6 96.50 NOTE
r-release-linux-ix86 0.6 3.00 64.00 67.00 NOTE
r-release-linux-x86_64 0.6 1.56 40.85 42.41 NOTE
r-release-osx-x86_64-mavericks 0.6 ERROR
r-release-osx-x86_64-snowleopard 0.6 NOTE
r-release-windows-ix86+x86_64 0.6 6.00 76.00 82.00 NOTE
r-oldrel-windows-ix86+x86_64 0.6 7.00 81.00 88.00 OK

Check Details

Version: 0.6
Check: foreign function calls
Result: NOTE
    Call with DUP = FALSE:
     .C("gemtc_rank_count", as.double(d), as.integer(n.iter), as.integer(n.alt),
     counts = matrix(0, nrow = n.alt, ncol = n.alt), NAOK = FALSE,
     DUP = FALSE, PACKAGE = "gemtc")
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 0.6
Check: R code for possible problems
Result: NOTE
    mtc.sample: no visible global function definition for ‘BRugsFit’
Flavors: r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 0.6
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘igraph’ ‘XML’
    
    Package suggested but not available for checking: ‘BRugs’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 0.6
Check: foreign function calls
Result: NOTE
    Call with DUP = FALSE:
     .C("gemtc_rank_count", as.double(d), as.integer(n.iter), as.integer(n.alt),
     counts = matrix(0, nrow = n.alt, ncol = n.alt), NAOK = FALSE,
     DUP = FALSE, PACKAGE = "gemtc")
    See the chapter ‘System and foreign language interfaces’ of the
    ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-sparc

Version: 0.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘rjags’ ‘BRugs’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6
Check: R code for possible problems
Result: NOTE
    mtc.sample: no visible global function definition for ‘load.module’
    mtc.sample: no visible global function definition for ‘jags.model’
    mtc.sample: no visible global function definition for ‘jags.samples’
    mtc.sample: no visible global function definition for ‘BRugsFit’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.6
Check: examples
Result: ERROR
    Running examples in ‘gemtc-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: mtc.hy.prior
    > ### Title: Set priors for the heterogeneity parameter
    > ### Aliases: mtc.hy.prior mtc.hy.empirical.lor
    >
    > ### ** Examples
    >
    > file <- system.file("extdata/luades-smoking.gemtc", package="gemtc")
    > network <- read.mtc.network(file)
    >
    > # NOTE: the mtc.run commands below are for illustrative purposes, such a small
    > # number of iterations should obviously not be used in practice.
    >
    > # set a uniform prior standard deviation
    > model1 <- mtc.model(network, hy.prior=mtc.hy.prior("std.dev", "dunif", 0, 2))
    > result <- mtc.run(model1, n.adapt=10, n.iter=10)
    
    Attaching package: ‘boot’
    
    The following object is masked from ‘package:lattice’:
    
     melanoma
    
    Warning: running command 'which wine' had status 1
    
    WARNING: The locate database (/var/db/locate.database) does not exist.
    To create the database, run the following command:
    
     sudo launchctl load -w /System/Library/LaunchDaemons/com.apple.locate.plist
    
    Please be aware that the database can take some time to generate; once
    the database has been created, this message will no longer appear.
    
    Warning: running command 'locate wine | grep bin/wine$' had status 1
    Error in findUnixBinary(x = "wine") : couldn't find wine binary file
    Calls: mtc.run ... mtc.sample -> as.mcmc.list -> bugs -> findUnixBinary
    Execution halted
Flavor: r-release-osx-x86_64-mavericks