CRAN Package Check Results for Package geneSignatureFinder

Last updated on 2015-09-03 22:47:58.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2014.02.17 0.72 34.48 35.20 NOTE
r-devel-linux-x86_64-debian-gcc 2014.02.17 0.72 34.53 35.25 NOTE
r-devel-linux-x86_64-fedora-clang 2014.02.17 42.50 NOTE
r-devel-linux-x86_64-fedora-gcc 2014.02.17 39.88 NOTE
r-devel-osx-x86_64-clang 2014.02.17 55.26 NOTE
r-devel-windows-ix86+x86_64 2014.02.17 3.00 78.00 81.00 NOTE
r-patched-linux-x86_64 2014.02.17 0.76 34.16 34.92 NOTE
r-patched-solaris-sparc 2014.02.17 579.60 NOTE
r-patched-solaris-x86 2014.02.17 117.20 NOTE
r-release-linux-x86_64 2014.02.17 0.98 34.07 35.05 NOTE
r-release-osx-x86_64-mavericks 2014.02.17 NOTE
r-release-windows-ix86+x86_64 2014.02.17 4.00 56.00 60.00 NOTE
r-oldrel-windows-ix86+x86_64 2014.02.17 6.00 57.00 63.00 NOTE

Check Details

Version: 2014.02.17
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘parallel’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2014.02.17
Check: R code for possible problems
Result: NOTE
    BICs: no visible global function definition for ‘median’
    BICs: no visible global function definition for ‘bw.nrd0’
    BICs: no visible global function definition for ‘dnorm’
    NCPUS: no visible global function definition for ‘detectCores’
    NCPUS: no visible global function definition for ‘makeCluster’
    bbootstrap: no visible global function definition for ‘median’
    checkGeneForSeed: no visible global function definition for ‘pchisq’
    dMixNorm: no visible global function definition for ‘dnorm’
    evaluateGeneSequence: no visible global function definition for
     ‘pchisq’
    importance: no visible global function definition for ‘clusterExport’
    importance: no visible global function definition for ‘clusterEvalQ’
    importance: no visible global function definition for ‘parApply’
    importance: no visible global function definition for ‘stopCluster’
    normalApproximation: no visible global function definition for ‘sd’
    pValueFun: no visible global function definition for ‘pchisq’
    pamUnbiased: no visible global function definition for ‘median’
    pamUnbiased: no visible global function definition for ‘bw.nrd0’
    parallelFindBest: no visible global function definition for ‘parApply’
    parallelSignatureFinder: no visible global function definition for
     ‘pchisq’
    parallelSignatureFinder: no visible global function definition for
     ‘parApply’
    parallelSignatureFinder: no visible global function definition for
     ‘fivenum’
    plot.gSignature: no visible global function definition for ‘plot’
    puttingAllTogether: no visible global function definition for
     ‘makeCluster’
    puttingAllTogether: no visible global function definition for ‘plot’
    puttingAllTogether: no visible global function definition for
     ‘dev.copy2pdf’
    puttingAllTogether: no visible global function definition for ‘barplot’
    puttingAllTogether: no visible global function definition for
     ‘stopCluster’
    puttingAllTogether: no visible global function definition for
     ‘write.csv’
    removeGeneFrom: no visible global function definition for ‘pchisq’
    seedsFinder: no visible global function definition for ‘clusterExport’
    seedsFinder: no visible global function definition for ‘clusterEvalQ’
    seedsFinder: no visible global function definition for ‘parApply’
    seedsFinder: no visible global function definition for ‘stopCluster’
    sequentialSignatureFinder: no visible global function definition for
     ‘pchisq’
    sequentialSignatureFinder: no visible global function definition for
     ‘fivenum’
    signatureFinder: no visible global function definition for
     ‘clusterExport’
    signatureFinder: no visible global function definition for
     ‘clusterEvalQ’
    signatureFinder: no visible global function definition for
     ‘stopCluster’
    testGE: no visible global function definition for ‘clusterExport’
    testGE: no visible global function definition for ‘parApply’
    testGE : <anonymous>: no visible global function definition for
     ‘t.test’
    testGE: no visible global function definition for ‘stopCluster’
    testGE: no visible global function definition for ‘t.test’
    testGE: no visible global function definition for ‘median’
    Undefined global functions or variables:
     barplot bw.nrd0 clusterEvalQ clusterExport detectCores dev.copy2pdf
     dnorm fivenum makeCluster median parApply pchisq plot sd stopCluster
     t.test write.csv
    Consider adding
     importFrom("grDevices", "dev.copy2pdf")
     importFrom("graphics", "barplot", "plot")
     importFrom("stats", "bw.nrd0", "dnorm", "fivenum", "median", "pchisq",
     "sd", "t.test")
     importFrom("utils", "write.csv")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2014.02.17
Check: R code for possible problems
Result: NOTE
    NCPUS: no visible global function definition for ‘detectCores’
    NCPUS: no visible global function definition for ‘makeCluster’
    importance: no visible global function definition for ‘clusterExport’
    importance: no visible global function definition for ‘clusterEvalQ’
    importance: no visible global function definition for ‘parApply’
    importance: no visible global function definition for ‘stopCluster’
    parallelFindBest: no visible global function definition for ‘parApply’
    parallelSignatureFinder: no visible global function definition for
     ‘parApply’
    puttingAllTogether: no visible global function definition for
     ‘makeCluster’
    puttingAllTogether: no visible global function definition for
     ‘stopCluster’
    seedsFinder: no visible global function definition for ‘clusterExport’
    seedsFinder: no visible global function definition for ‘clusterEvalQ’
    seedsFinder: no visible global function definition for ‘parApply’
    seedsFinder: no visible global function definition for ‘stopCluster’
    signatureFinder: no visible global function definition for
     ‘clusterExport’
    signatureFinder: no visible global function definition for
     ‘clusterEvalQ’
    signatureFinder: no visible global function definition for
     ‘stopCluster’
    testGE: no visible global function definition for ‘clusterExport’
    testGE: no visible global function definition for ‘parApply’
    testGE: no visible global function definition for ‘stopCluster’
    Undefined global functions or variables:
     clusterEvalQ clusterExport detectCores makeCluster parApply
     stopCluster
Flavor: r-devel-osx-x86_64-clang

Version: 2014.02.17
Check: R code for possible problems
Result: NOTE
    NCPUS: no visible global function definition for ‘detectCores’
    NCPUS: no visible global function definition for ‘makeCluster’
    importance: no visible global function definition for ‘clusterExport’
    importance: no visible global function definition for ‘clusterEvalQ’
    importance: no visible global function definition for ‘parApply’
    importance: no visible global function definition for ‘stopCluster’
    parallelFindBest: no visible global function definition for ‘parApply’
    parallelSignatureFinder: no visible global function definition for
     ‘parApply’
    puttingAllTogether: no visible global function definition for
     ‘makeCluster’
    puttingAllTogether: no visible global function definition for
     ‘stopCluster’
    seedsFinder: no visible global function definition for ‘clusterExport’
    seedsFinder: no visible global function definition for ‘clusterEvalQ’
    seedsFinder: no visible global function definition for ‘parApply’
    seedsFinder: no visible global function definition for ‘stopCluster’
    signatureFinder: no visible global function definition for
     ‘clusterExport’
    signatureFinder: no visible global function definition for
     ‘clusterEvalQ’
    signatureFinder: no visible global function definition for
     ‘stopCluster’
    testGE: no visible global function definition for ‘clusterExport’
    testGE: no visible global function definition for ‘parApply’
    testGE: no visible global function definition for ‘stopCluster’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64