CRAN Package Check Results for Package genoPlotR

Last updated on 2015-07-02 11:48:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.8.2 1.10 67.35 68.45 NOTE
r-devel-linux-x86_64-debian-gcc 0.8.2 1.08 67.28 68.36 NOTE
r-devel-linux-x86_64-fedora-clang 0.8.2 141.35 NOTE
r-devel-linux-x86_64-fedora-gcc 0.8.2 131.04 NOTE
r-devel-osx-x86_64-clang 0.8.2 128.85 NOTE
r-devel-windows-ix86+x86_64 0.8.2 5.00 93.00 98.00 NOTE
r-patched-linux-x86_64 0.8.2 1.12 67.92 69.04 NOTE
r-patched-solaris-sparc 0.8.2 848.90 NOTE
r-patched-solaris-x86 0.8.2 149.90 NOTE
r-release-linux-x86_64 0.8.2 1.18 66.26 67.44 NOTE
r-release-osx-x86_64-mavericks 0.8.2 NOTE
r-release-windows-ix86+x86_64 0.8.2 5.00 96.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 0.8.2 8.00 178.00 186.00 NOTE

Check Details

Version: 0.8.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.8.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ade4’ ‘grid’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     trim.seg_plot
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.8.2
Check: R code for possible problems
Result: NOTE
    annotation_grob: no visible global function definition for ‘gList’
    apply_color_scheme: no visible global function definition for ‘grey’
    artemisColors: no visible global function definition for ‘rgb’
    comparison_grob: no visible global function definition for ‘gList’
    dna_seg_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for
     ‘textGrob’
    dna_seg_label_grob: no visible global function definition for ‘gpar’
    dna_seg_label_grob: no visible global function definition for ‘unit’
    dna_seg_label_grob: no visible global function definition for ‘gTree’
    dna_seg_label_grob: no visible global function definition for
     ‘viewport’
    dna_seg_scale_grob: no visible global function definition for ‘gList’
    dna_seg_scale_grob: no visible global function definition for
     ‘segmentsGrob’
    dna_seg_scale_grob: no visible global function definition for ‘gpar’
    dna_seg_scale_grob: no visible global function definition for ‘grey’
    dna_seg_scale_grob: no visible global function definition for
     ‘textGrob’
    gap_grob: no visible global function definition for ‘segmentsGrob’
    gap_grob: no visible global function definition for ‘gpar’
    gap_grob: no visible global function definition for ‘grey’
    gene_grob: no visible global function definition for ‘polygonGrob’
    gene_grob: no visible global function definition for ‘gpar’
    gene_grob: no visible global function definition for ‘segmentsGrob’
    gene_grob: no visible global function definition for ‘pointsGrob’
    gene_grob: no visible global function definition for ‘unit’
    gene_grob: no visible global function definition for ‘textGrob’
    gene_grob: no visible global function definition for ‘is.grob’
    gene_grob: no visible binding for global variable ‘is.grob’
    human_nt: no visible global function definition for ‘median’
    label_grob: no visible global function definition for ‘gList’
    label_grob: no visible global function definition for ‘linesGrob’
    label_grob: no visible global function definition for ‘gpar’
    label_grob: no visible global function definition for ‘textGrob’
    minimize_comps : mean_w_gaps: no visible global function definition for
     ‘weighted.mean’
    minimize_comps: no visible global function definition for ‘optim’
    permute_tree: no visible global function definition for ‘enum.phylog’
    phylog_grob: no visible global function definition for ‘grey’
    phylog_grob: no visible global function definition for ‘gList’
    phylog_grob: no visible global function definition for ‘textGrob’
    phylog_grob: no visible global function definition for ‘gpar’
    phylog_grob: no visible global function definition for ‘segmentsGrob’
    phylog_grob: no visible global function definition for ‘unit’
    phylog_grob: no visible global function definition for ‘nullGrob’
    phylog_grob: no visible global function definition for ‘gTree’
    phylog_grob: no visible global function definition for ‘viewport’
    phylog_grob: no visible global function definition for ‘grid.layout’
    phylog_grob: no visible global function definition for ‘unit.c’
    phylog_grob: no visible global function definition for ‘frameGrob’
    phylog_grob: no visible global function definition for ‘placeGrob’
    plot_gene_map: no visible global function definition for ‘unit’
    plot_gene_map: no visible global function definition for ‘textGrob’
    plot_gene_map: no visible global function definition for ‘gpar’
    plot_gene_map: no visible global function definition for ‘grid.newpage’
    plot_gene_map: no visible global function definition for ‘pushViewport’
    plot_gene_map: no visible global function definition for ‘viewport’
    plot_gene_map: no visible global function definition for ‘grid.layout’
    plot_gene_map: no visible global function definition for ‘grid.draw’
    plot_gene_map: no visible global function definition for ‘upViewport’
    plot_gene_map: no visible global function definition for ‘unit.c’
    plot_gene_map: no visible global function definition for
     ‘grid.segments’
    read_comparison_from_blast: no visible global function definition for
     ‘read.table’
    read_comparison_from_tab: no visible global function definition for
     ‘read.table’
    read_dna_seg_from_ptt: no visible global function definition for
     ‘read.table’
    read_dna_seg_from_tab: no visible global function definition for
     ‘read.table’
    read_mauve_backbone: no visible global function definition for
     ‘read.table’
    read_mauve_backbone: no visible global function definition for
     ‘rainbow’
    scale_grob: no visible global function definition for ‘gList’
    scale_grob: no visible global function definition for ‘segmentsGrob’
    scale_grob: no visible global function definition for ‘textGrob’
    similarity_grob: no visible global function definition for ‘grey’
    similarity_grob: no visible global function definition for
     ‘polygonGrob’
    similarity_grob: no visible global function definition for ‘gpar’
    yaxis_grob: no visible global function definition for ‘gList’
    yaxis_grob: no visible global function definition for ‘segmentsGrob’
    yaxis_grob: no visible global function definition for ‘unit’
    yaxis_grob: no visible global function definition for ‘textGrob’
    yaxis_grob: no visible global function definition for ‘gpar’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.8.2
Check: R code for possible problems
Result: NOTE
    annotation_grob: no visible global function definition for ‘gList’
    apply_color_scheme: no visible global function definition for ‘grey’
    artemisColors: no visible global function definition for ‘rgb’
    comparison_grob: no visible global function definition for ‘gList’
    dna_seg_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for
     ‘textGrob’
    dna_seg_label_grob: no visible global function definition for ‘gpar’
    dna_seg_label_grob: no visible global function definition for ‘unit’
    dna_seg_label_grob: no visible global function definition for ‘gTree’
    dna_seg_label_grob: no visible global function definition for
     ‘viewport’
    dna_seg_scale_grob: no visible global function definition for ‘gList’
    dna_seg_scale_grob: no visible global function definition for
     ‘segmentsGrob’
    dna_seg_scale_grob: no visible global function definition for ‘gpar’
    dna_seg_scale_grob: no visible global function definition for ‘grey’
    dna_seg_scale_grob: no visible global function definition for
     ‘textGrob’
    gap_grob: no visible global function definition for ‘segmentsGrob’
    gap_grob: no visible global function definition for ‘gpar’
    gap_grob: no visible global function definition for ‘grey’
    gene_grob: no visible global function definition for ‘polygonGrob’
    gene_grob: no visible global function definition for ‘gpar’
    gene_grob: no visible global function definition for ‘segmentsGrob’
    gene_grob: no visible global function definition for ‘pointsGrob’
    gene_grob: no visible global function definition for ‘unit’
    gene_grob: no visible global function definition for ‘textGrob’
    gene_grob: no visible global function definition for ‘is.grob’
    gene_grob: no visible binding for global variable ‘is.grob’
    human_nt: no visible global function definition for ‘median’
    label_grob: no visible global function definition for ‘gList’
    label_grob: no visible global function definition for ‘linesGrob’
    label_grob: no visible global function definition for ‘gpar’
    label_grob: no visible global function definition for ‘textGrob’
    minimize_comps : mean_w_gaps: no visible global function definition for
     ‘weighted.mean’
    minimize_comps: no visible global function definition for ‘optim’
    permute_tree: no visible global function definition for ‘enum.phylog’
    phylog_grob: no visible global function definition for ‘grey’
    phylog_grob: no visible global function definition for ‘gList’
    phylog_grob: no visible global function definition for ‘textGrob’
    phylog_grob: no visible global function definition for ‘gpar’
    phylog_grob: no visible global function definition for ‘segmentsGrob’
    phylog_grob: no visible global function definition for ‘unit’
    phylog_grob: no visible global function definition for ‘nullGrob’
    phylog_grob: no visible global function definition for ‘gTree’
    phylog_grob: no visible global function definition for ‘viewport’
    phylog_grob: no visible global function definition for ‘grid.layout’
    phylog_grob: no visible global function definition for ‘unit.c’
    phylog_grob: no visible global function definition for ‘frameGrob’
    phylog_grob: no visible global function definition for ‘placeGrob’
    plot_gene_map: no visible global function definition for ‘unit’
    plot_gene_map: no visible global function definition for ‘textGrob’
    plot_gene_map: no visible global function definition for ‘gpar’
    plot_gene_map: no visible global function definition for ‘grid.newpage’
    plot_gene_map: no visible global function definition for ‘pushViewport’
    plot_gene_map: no visible global function definition for ‘viewport’
    plot_gene_map: no visible global function definition for ‘grid.layout’
    plot_gene_map: no visible global function definition for ‘grid.draw’
    plot_gene_map: no visible global function definition for ‘upViewport’
    plot_gene_map: no visible global function definition for ‘unit.c’
    plot_gene_map: no visible global function definition for
     ‘grid.segments’
    read_comparison_from_blast: no visible global function definition for
     ‘read.table’
    read_comparison_from_tab: no visible global function definition for
     ‘read.table’
    read_dna_seg_from_ptt: no visible global function definition for
     ‘read.table’
    read_dna_seg_from_tab: no visible global function definition for
     ‘read.table’
    read_mauve_backbone: no visible global function definition for
     ‘read.table’
    read_mauve_backbone: no visible global function definition for
     ‘rainbow’
    scale_grob: no visible global function definition for ‘gList’
    scale_grob: no visible global function definition for ‘segmentsGrob’
    scale_grob: no visible global function definition for ‘textGrob’
    similarity_grob: no visible global function definition for ‘grey’
    similarity_grob: no visible global function definition for
     ‘polygonGrob’
    similarity_grob: no visible global function definition for ‘gpar’
    yaxis_grob: no visible global function definition for ‘gList’
    yaxis_grob: no visible global function definition for ‘segmentsGrob’
    yaxis_grob: no visible global function definition for ‘unit’
    yaxis_grob: no visible global function definition for ‘textGrob’
    yaxis_grob: no visible global function definition for ‘gpar’
    Undefined global functions or variables:
     enum.phylog frameGrob gList gTree gpar grey grid.draw grid.layout
     grid.newpage grid.segments is.grob linesGrob median nullGrob optim
     placeGrob pointsGrob polygonGrob pushViewport rainbow read.table rgb
     segmentsGrob textGrob unit unit.c upViewport viewport weighted.mean
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.2
Check: R code for possible problems
Result: NOTE
    annotation_grob: no visible global function definition for ‘gList’
    comparison_grob: no visible global function definition for ‘gList’
    dna_seg_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for ‘gList’
    dna_seg_label_grob: no visible global function definition for
     ‘textGrob’
    dna_seg_label_grob: no visible global function definition for ‘gpar’
    dna_seg_label_grob: no visible global function definition for ‘unit’
    dna_seg_label_grob: no visible global function definition for ‘gTree’
    dna_seg_label_grob: no visible global function definition for
     ‘viewport’
    dna_seg_scale_grob: no visible global function definition for ‘gList’
    dna_seg_scale_grob: no visible global function definition for
     ‘segmentsGrob’
    dna_seg_scale_grob: no visible global function definition for ‘gpar’
    dna_seg_scale_grob: no visible global function definition for
     ‘textGrob’
    gap_grob: no visible global function definition for ‘segmentsGrob’
    gap_grob: no visible global function definition for ‘gpar’
    gene_grob: no visible global function definition for ‘polygonGrob’
    gene_grob: no visible global function definition for ‘gpar’
    gene_grob: no visible global function definition for ‘segmentsGrob’
    gene_grob: no visible global function definition for ‘pointsGrob’
    gene_grob: no visible global function definition for ‘unit’
    gene_grob: no visible global function definition for ‘textGrob’
    gene_grob: no visible global function definition for ‘is.grob’
    gene_grob: no visible binding for global variable ‘is.grob’
    label_grob: no visible global function definition for ‘gList’
    label_grob: no visible global function definition for ‘linesGrob’
    label_grob: no visible global function definition for ‘gpar’
    label_grob: no visible global function definition for ‘textGrob’
    permute_tree: no visible global function definition for ‘enum.phylog’
    phylog_grob: no visible global function definition for ‘gList’
    phylog_grob: no visible global function definition for ‘textGrob’
    phylog_grob: no visible global function definition for ‘gpar’
    phylog_grob: no visible global function definition for ‘segmentsGrob’
    phylog_grob: no visible global function definition for ‘unit’
    phylog_grob: no visible global function definition for ‘nullGrob’
    phylog_grob: no visible global function definition for ‘gTree’
    phylog_grob: no visible global function definition for ‘viewport’
    phylog_grob: no visible global function definition for ‘grid.layout’
    phylog_grob: no visible global function definition for ‘unit.c’
    phylog_grob: no visible global function definition for ‘frameGrob’
    phylog_grob: no visible global function definition for ‘placeGrob’
    plot_gene_map: no visible global function definition for ‘unit’
    plot_gene_map: no visible global function definition for ‘textGrob’
    plot_gene_map: no visible global function definition for ‘gpar’
    plot_gene_map: no visible global function definition for ‘grid.newpage’
    plot_gene_map: no visible global function definition for ‘pushViewport’
    plot_gene_map: no visible global function definition for ‘viewport’
    plot_gene_map: no visible global function definition for ‘grid.layout’
    plot_gene_map: no visible global function definition for ‘grid.draw’
    plot_gene_map: no visible global function definition for ‘upViewport’
    plot_gene_map: no visible global function definition for ‘unit.c’
    plot_gene_map: no visible global function definition for
     ‘grid.segments’
    scale_grob: no visible global function definition for ‘gList’
    scale_grob: no visible global function definition for ‘segmentsGrob’
    scale_grob: no visible global function definition for ‘textGrob’
    similarity_grob: no visible global function definition for
     ‘polygonGrob’
    similarity_grob: no visible global function definition for ‘gpar’
    yaxis_grob: no visible global function definition for ‘gList’
    yaxis_grob: no visible global function definition for ‘segmentsGrob’
    yaxis_grob: no visible global function definition for ‘unit’
    yaxis_grob: no visible global function definition for ‘textGrob’
    yaxis_grob: no visible global function definition for ‘gpar’
Flavors: r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64