CRAN Package Check Results for Package geoR

Last updated on 2014-09-20 23:48:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-4.1 3.52 72.02 75.54 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-4.1 3.63 79.41 83.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-4.1 152.75 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-4.1 141.38 NOTE
r-devel-osx-x86_64-clang 1.7-4.1 123.14 NOTE
r-devel-windows-ix86+x86_64 1.7-4.1 10.00 116.00 126.00 NOTE
r-patched-linux-x86_64 1.7-4.1 3.80 78.20 82.01 NOTE
r-patched-solaris-sparc 1.7-4.1 820.80 NOTE
r-patched-solaris-x86 1.7-4.1 154.70 NOTE
r-release-linux-ix86 1.7-4.1 5.12 94.63 99.75 NOTE
r-release-linux-x86_64 1.7-4.1 3.93 78.70 82.63 NOTE
r-release-osx-x86_64-mavericks 1.7-4.1 NOTE
r-release-windows-ix86+x86_64 1.7-4.1 12.00 124.00 136.00 NOTE
r-oldrel-windows-ix86+x86_64 1.7-4.1 13.00 124.00 137.00 NOTE

Memtest notes: valgrind

Check Details

Version: 1.7-4.1
Check: dependencies in R code
Result: NOTE
    ':::' call which should be '::': ‘scatterplot3d:::scatterplot3d’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘.check.cov.model’
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
    eyefit: no visible global function definition for ‘tclVar’
    eyefit : replot: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for
     ‘tkconfigure’
    eyefit : redraw: no visible global function definition for ‘tkfocus’
    eyefit: no visible global function definition for ‘tktoplevel’
    eyefit: no visible global function definition for ‘tkwm.title’
    eyefit: no visible global function definition for ‘tkframe’
    eyefit: no visible global function definition for ‘tkpack’
    eyefit: no visible global function definition for ‘tklabel’
    eyefit: no visible global function definition for ‘tkentry’
    eyefit: no visible global function definition for ‘tkscale’
    eyefit: no visible global function definition for ‘tkradiobutton’
    eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
    eyefit : OnSave: no visible global function definition for ‘tclObj’
    eyefit: no visible global function definition for ‘tkbutton’
    eyefit: no visible global function definition for ‘tkbind’
    eyefit : <anonymous>: no visible global function definition for
     ‘tclvalue<-’
    eyefit: no visible global function definition for ‘tkwait.variable’
    eyefit: no visible global function definition for ‘tkdestroy’
    hist.krige.bayes: no visible global function definition for
     ‘bandwidth.nrd’
    
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/likOLD.R’:
     assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
     fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
     cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
     dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
     n = n, minimisation.function = minimisation.function), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.sill", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.nugget", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.phi", phi, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
    
    Found the following calls to attach():
    File ‘geoR/R/auxiliar.R’:
     attach(geodata, pos = 2, warn.conflicts = FALSE)
     attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
    File ‘geoR/R/geobayes.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/geodata.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/kriging.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.7-4.1
Check: Rd line widths
Result: NOTE
    Rd file 'coords2coords.Rd':
     \examples lines wider than 100 characters:
     legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
     r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
    
    Rd file 'sample.prior.Rd':
     \examples lines wider than 100 characters:
     sample.prior(50, prior=prior.control(beta.prior = "normal", beta = .5, beta.var.std=0.1, sigmasq.prior="sc", sigmasq=1.2, df.sigmasq= 2 ... [TRUNCATED]
    
    Rd file 'subarea.Rd':
     \examples lines wider than 100 characters:
     legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
     r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
    eyefit: no visible global function definition for ‘tclVar’
    eyefit : replot: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for
     ‘tkconfigure’
    eyefit : redraw: no visible global function definition for ‘tkfocus’
    eyefit: no visible global function definition for ‘tktoplevel’
    eyefit: no visible global function definition for ‘tkwm.title’
    eyefit: no visible global function definition for ‘tkframe’
    eyefit: no visible global function definition for ‘tkpack’
    eyefit: no visible global function definition for ‘tklabel’
    eyefit: no visible global function definition for ‘tkentry’
    eyefit: no visible global function definition for ‘tkscale’
    eyefit: no visible global function definition for ‘tkradiobutton’
    eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
    eyefit : OnSave: no visible global function definition for ‘tclObj’
    eyefit: no visible global function definition for ‘tkbutton’
    eyefit: no visible global function definition for ‘tkbind’
    eyefit : <anonymous>: no visible global function definition for
     ‘tclvalue<-’
    eyefit: no visible global function definition for ‘tkwait.variable’
    eyefit: no visible global function definition for ‘tkdestroy’
    hist.krige.bayes: no visible global function definition for
     ‘bandwidth.nrd’
    
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/likOLD.R’:
     assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
     fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
     cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
     dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
     n = n, minimisation.function = minimisation.function), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.sill", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.nugget", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.phi", phi, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang

Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
    eyefit: no visible global function definition for ‘tclVar’
    eyefit : replot: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for ‘tclObj’
    eyefit : redraw: no visible global function definition for
     ‘tkconfigure’
    eyefit : redraw: no visible global function definition for ‘tkfocus’
    eyefit: no visible global function definition for ‘tktoplevel’
    eyefit: no visible global function definition for ‘tkwm.title’
    eyefit: no visible global function definition for ‘tkframe’
    eyefit: no visible global function definition for ‘tkpack’
    eyefit: no visible global function definition for ‘tklabel’
    eyefit: no visible global function definition for ‘tkentry’
    eyefit: no visible global function definition for ‘tkscale’
    eyefit: no visible global function definition for ‘tkradiobutton’
    eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
    eyefit : OnSave: no visible global function definition for ‘tclObj’
    eyefit: no visible global function definition for ‘tkbutton’
    eyefit: no visible global function definition for ‘tkbind’
    eyefit : <anonymous>: no visible global function definition for
     ‘tclvalue<-’
    eyefit: no visible global function definition for ‘tkwait.variable’
    eyefit: no visible global function definition for ‘tkdestroy’
    hist.krige.bayes: no visible global function definition for
     ‘bandwidth.nrd’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/likOLD.R’:
     assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
     fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
     cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
     dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
     n = n, minimisation.function = minimisation.function), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.sill", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.nugget", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.phi", phi, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
    
    Found the following calls to attach():
    File ‘geoR/R/auxiliar.R’:
     attach(geodata, pos = 2, warn.conflicts = FALSE)
     attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
    File ‘geoR/R/geobayes.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/geodata.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    File ‘geoR/R/kriging.R’:
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
     attach(x, pos = 2, warn.conflicts = FALSE)
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File ‘geoR/R/auxiliar.R’:
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File ‘geoR/R/likGRF.R’:
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File ‘geoR/R/likOLD.R’:
     assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
     fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
     cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
     dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
     n = n, minimisation.function = minimisation.function), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.sill", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.nugget", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.phi", phi, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File ‘geoR/R/profiles.R’:
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
    File ‘geoR/R/simul.R’:
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File ‘geoR/R/variofit.R’:
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File ‘geoR/R/variogram.R’:
     assign(".variog4.nomessage", TRUE, pos = 1)
Flavor: r-release-linux-ix86