CRAN Package Check Results for Package geoR

Last updated on 2014-07-31 11:51:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-4 3.61 80.96 84.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-4 3.86 78.54 82.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-4 166.16 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-4 155.40 NOTE
r-devel-osx-x86_64-clang 1.7-4 142.81 NOTE
r-devel-windows-ix86+x86_64 1.7-4 13.00 129.00 142.00 NOTE
r-patched-linux-x86_64 1.7-4 3.75 80.82 84.58 NOTE
r-patched-solaris-sparc 1.7-4 923.20 NOTE
r-patched-solaris-x86 1.7-4 188.70 NOTE
r-release-linux-ix86 1.7-4 4.85 93.86 98.72 NOTE
r-release-linux-x86_64 1.7-4 3.80 84.05 87.85 NOTE
r-release-osx-x86_64-mavericks 1.7-4 NOTE
r-release-windows-ix86+x86_64 1.7-4 20.00 172.00 192.00 NOTE
r-oldrel-windows-ix86+x86_64 1.7-4 18.00 170.00 188.00 NOTE

Memtest notes: valgrind

Check Details

Version: 1.7-4
Check: dependencies in R code
Result: NOTE
    ':::' call which should be '::': scatterplot3d:::scatterplot3d
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     .check.cov.model
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.7-4
Check: foreign function calls
Result: NOTE
    Calls with DUP = FALSE:
     .C("cor_diag", as.double(coords[, 1]), as.double(coords[, 2]),
     as.integer(nc), as.integer(.cor.number(cov.model)), as.double(phi),
     as.double(kappa), out, DUP = FALSE, PACKAGE = "geoR")
     .C("distdiag", as.double(coords[, 1]), as.double(coords[, 2]),
     as.integer(nc), out, DUP = FALSE, PACKAGE = "geoR")
     .C("loccoords", as.double(as.vector(locations[, 1])), as.double(as.vector(locations[,
     2])), as.double(as.vector(coords[, 1])), as.double(as.vector(coords[,
     2])), as.integer(nl), as.integer(nc), out, DUP = FALSE, PACKAGE = "geoR")
    DUP = FALSE is deprecated and may be disabled in future versions of R.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.7-4
Check: R code for possible problems
Result: NOTE
    Found the following assignments to the global environment:
    File geoR/R/auxiliar.R :
     assign(".objfuncQQ", objfunc, pos = 1)
     assign(".bounds.list", .bounds.list, pos = 1)
     assign("madtonormalQQ", madtonormalQQ, pos = 1)
    File geoR/R/likGRF.R :
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
     realisations), vecdist), pos = 1)
     assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
     temp.list$realisations), vecdist), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
    File geoR/R/likOLD.R :
     assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
     fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
     cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
     dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
     n = n, minimisation.function = minimisation.function), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower", c(0, lower.phi), pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.lower.phi", lower.phi, pos = 1)
     assign(".temp.lower.lambda", -2, pos = 1)
     assign(".temp.upper.lambda", 2, pos = 1)
     assign(".ind.prof.phi", 1, pos = 1)
     assign(".temp.sill", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.nugget", theta[1], pos = 1)
     assign(".temp.phi", theta[2], pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.phi", phi, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
     assign(".temp.lambda", lambda, pos = 1)
    File geoR/R/profiles.R :
     assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
     kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
     dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
     fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
     lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
     phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
     sigmasq.est = sigmasq), pos = 1)
     assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
     assign(".temp.list", .temp.temp.list, pos = 1)
    File geoR/R/simul.R :
     assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
     nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
     pos = 1)
    File geoR/R/variofit.R :
     assign(".temp.theta", NULL, pos = 1)
     assign(".temp.theta", theta, pos = 1)
     assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
    File geoR/R/variogram.R :
     assign(".variog4.nomessage", TRUE, pos = 1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.7-4
Check: Rd line widths
Result: NOTE
    Rd file 'coords2coords.Rd':
     \examples lines wider than 100 characters:
     legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
     r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
    
    Rd file 'sample.prior.Rd':
     \examples lines wider than 100 characters:
     sample.prior(50, prior=prior.control(beta.prior = "normal", beta = .5, beta.var.std=0.1, sigmasq.prior="sc", sigmasq=1.2, df.sigmasq= 2 ... [TRUNCATED]
    
    Rd file 'subarea.Rd':
     \examples lines wider than 100 characters:
     legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
     r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc