CRAN Package Check Results for Package geomorph

Last updated on 2015-02-01 20:48:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.2 5.83 66.41 72.24 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.2 5.88 62.68 68.56 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.2 149.25 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.2 144.62 NOTE
r-devel-osx-x86_64-clang 2.1.2 128.18 NOTE
r-devel-windows-ix86+x86_64 2.1.2 26.00 133.00 159.00 NOTE
r-patched-linux-x86_64 2.1.2 8.21 89.55 97.76 NOTE
r-patched-solaris-sparc 2.1.2 1166.40 OK
r-patched-solaris-x86 2.1.2 266.00 NOTE
r-release-linux-ix86 2.1.2 9.02 105.47 114.49 OK
r-release-linux-x86_64 2.1.2 8.67 91.12 99.79 OK
r-release-osx-x86_64-mavericks 2.1.2 NOTE
r-release-osx-x86_64-snowleopard 2.1.2 ERROR
r-release-windows-ix86+x86_64 2.1.2 25.00 192.00 217.00 OK
r-oldrel-windows-ix86+x86_64 2.1.1 33.00 233.00 266.00 NOTE

Check Details

Version: 2.1.2
Check: line endings in Makefiles
Result: NOTE
    Found the following Makefile(s) without a final LF:
     src/Makevars
    Some ‘make’ programs ignore lines not ending in LF.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.1.2
Check: examples
Result: ERROR
    Running examples in ‘geomorph-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bilat.symmetry
    > ### Title: Analysis of bilateral symmetry
    > ### Aliases: bilat.symmetry
    > ### Keywords: analysis
    >
    > ### ** Examples
    >
    > #Example of matching symmetry
    >
    > data(mosquito)
    > bilat.symmetry(mosquito$wingshape,ind=mosquito$ind,side=mosquito$side,
    + replicate=mosquito$replicate,object.sym=FALSE)
    [1] "No specimen names in response matrix. Assuming specimens in same order."
    $ANOVA.size
     Df Sum Sq Mean Sq F P
    ind 9 4.1497e-09 4.6107e-10 0.5965 0.77333
    side 1 3.4740e-10 3.4738e-10 0.4494 0.51945
    ind:side 9 6.9569e-09 7.7299e-10 1.4170 0.24590
    replicate 20 1.0910e-08 5.4549e-10
    
    $ANOVA.Shape
     df SS MS F.Goodall P.param P.value F
    ind 288 0.104888 0.00036419 0.58129 0.5 2.6901
    side 32 0.003221 0.00010065 0.28244 1.0 0.7435
    ind:side 288 0.038990 0.00013538 0.42629 1.0 1.0407
    ind:side:replicate 640 0.083259 0.00013009 0.45589 1.0
    Residuals 0 0.000000
     P
    ind 0.00000
    side 0.84331
    ind:side 0.34061
    ind:side:replicate
    Residuals
    
    >
    > #Example of object symmetry
    >
    > data(scallops)
    > bilat.symmetry(scallops$coorddata,ind=scallops$ind,object.sym=TRUE,land.pairs=scallops$land.pairs)
    [1] "No specimen names in response matrix. Assuming specimens in same order."
    Sun Feb 1 10:37:10 hagal.research.att.com R[30693] <Error>: unknown error code: invalid pixel format
    Sun Feb 1 10:37:10 hagal.research.att.com R[30693] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    X Error of failed request: GLXBadContext
     Major opcode of failed request: 0 ()
     Serial number of failed request: 27
     Current serial number in output stream: 27
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.1.1
Check: R code for possible problems
Result: NOTE
    digit.fixed: no visible global function definition for 'anyNA'
Flavor: r-oldrel-windows-ix86+x86_64