CRAN Package Check Results for Package ggm

Last updated on 2016-05-31 17:51:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 2.3 1.75 34.13 35.88 NOTE
r-devel-linux-x86_64-fedora-clang 2.3 69.81 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3 58.66 NOTE
r-devel-osx-x86_64-clang 2.3 67.95 NOTE
r-devel-windows-ix86+x86_64 2.3 7.00 66.00 73.00 NOTE
r-patched-linux-x86_64 2.3 1.94 37.23 39.17 NOTE
r-patched-solaris-sparc 2.3 385.80 NOTE
r-patched-solaris-x86 2.3 76.50 NOTE
r-release-linux-x86_64 2.3 1.86 33.60 35.47 NOTE
r-release-osx-x86_64-mavericks 2.3 ERROR
r-release-windows-ix86+x86_64 2.3 8.00 82.00 90.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3 8.00 83.00 91.00 OK

Check Details

Version: 2.3
Check: R code for possible problems
Result: NOTE
    DAG: no visible global function definition for ‘terms’
    DG: no visible global function definition for ‘terms’
    UG: no visible global function definition for ‘terms’
    correlations: no visible global function definition for ‘cor’
    drawGraph : plot.dots: no visible global function definition for
     ‘points’
    drawGraph : plot.dots: no visible global function definition for ‘text’
    drawGraph : double.edges: no visible global function definition for
     ‘lines’
    drawGraph : double.edges: no visible global function definition for
     ‘segments’
    drawGraph : double.edges: no visible global function definition for
     ‘arrows’
    drawGraph : draw.edges: no visible global function definition for
     ‘segments’
    drawGraph : draw.edges: no visible global function definition for
     ‘arrows’
    drawGraph: no visible global function definition for ‘par’
    drawGraph: no visible global function definition for ‘plot’
    drawGraph: no visible global function definition for ‘locator’
    fitDAG: no visible global function definition for ‘formula’
    fitDAG: no visible global function definition for ‘var’
    fitDAG: no visible global function definition for ‘lm’
    fitmlogit: no visible global function definition for ‘model.frame’
    fitmlogit: no visible global function definition for ‘model.response’
    fitmlogit: no visible global function definition for ‘model.matrix’
    fitmlogit: no visible global function definition for ‘glm’
    fitmlogit: no visible binding for global variable ‘binomial’
    fitmlogit: no visible global function definition for ‘coef’
    pcor.test: no visible global function definition for ‘pt’
    plotGraph: no visible global function definition for ‘plot’
    rnormDag: no visible global function definition for ‘rnorm’
    rsphere: no visible global function definition for ‘rnorm’
    shipley.test : pval: no visible global function definition for ‘pt’
    shipley.test: no visible global function definition for ‘pchisq’
    Undefined global functions or variables:
     arrows binomial coef cor formula glm lines lm locator model.frame
     model.matrix model.response par pchisq plot points pt rnorm segments
     terms text var
    Consider adding
     importFrom("graphics", "arrows", "lines", "locator", "par", "plot",
     "points", "segments", "text")
     importFrom("stats", "binomial", "coef", "cor", "formula", "glm", "lm",
     "model.frame", "model.matrix", "model.response", "pchisq",
     "pt", "rnorm", "terms", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.3
Check: examples
Result: ERROR
    Running examples in ‘ggm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: AG
    > ### Title: Ancestral graph
    > ### Aliases: AG
    > ### Keywords: graphs ancestral graph directed acyclic graph marginalization
    > ### and conditioning
    >
    > ### ** Examples
    >
    > ##The adjacency matrix of a DAG
    > ex<-matrix(c(0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,1,0,0,1,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,
    + 0,0,0,0,1,0,1,0,1,1,0,0,0,0,0,0,
    + 1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,1,0,1,0,0,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
    + 1,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,
    + 0,0,0,0,0,0,0,0,0,0,0,1,0,1,0,0),16,16,byrow=TRUE)
    > M <- c(3,5,6,15,16)
    > C <- c(4,7)
    > AG(ex, M, C, plot = TRUE)
    Invalid MIT-MAGIC-COOKIE-1 keyWarning in fun(libname, pkgname) : couldn't connect to display ":0"
    Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") :
     [tcl] invalid command name "font".
    Calls: AG ... .tkplot.convert.font -> <Anonymous> -> tcl -> .Tcl.objv -> structure
    Execution halted
Flavor: r-release-osx-x86_64-mavericks