CRAN Package Check Results for Package gitter

Last updated on 2015-09-04 23:56:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.4 1.78 30.08 31.86 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.4 1.73 29.96 31.69 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.4 62.37 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.4 60.76 NOTE
r-devel-osx-x86_64-clang 1.0.4 57.75 NOTE
r-devel-windows-ix86+x86_64 1.0.4 8.00 50.00 58.00 NOTE
r-patched-linux-x86_64 1.0.4 2.07 31.96 34.04 NOTE
r-release-linux-x86_64 1.0.4 2.07 32.48 34.55 NOTE
r-release-osx-x86_64-mavericks 1.0.4 OK
r-release-windows-ix86+x86_64 1.0.4 9.00 57.00 66.00 OK
r-oldrel-windows-ix86+x86_64 1.0.4 13.00 98.00 111.00 OK

Check Details

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.gitter summary.gitter
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.4
Check: R code for possible problems
Result: NOTE
    .colonyPeaks: no visible global function definition for ‘runmed’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘dnorm’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘median’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘sd’
    .colonyPeaks: no visible global function definition for ‘median’
    .colonyPeaks: no visible global function definition for ‘abline’
    .colonyPeaks: no visible global function definition for ‘lines’
    .colonyPeaks: no visible global function definition for ‘text’
    .colonyPeaks: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘ksmooth’
    .estimateWindow2: no visible global function definition for ‘median’
    .findOptimalThreshold: no visible global function definition for
     ‘quantile’
    .findSlope: no visible global function definition for ‘var’
    .fixOuterPeaks: no visible global function definition for ‘sd’
    .fixOuterPeaks: no visible global function definition for ‘median’
    .getFlags: no visible global function definition for ‘median’
    .getPeaks: no visible global function definition for ‘embed’
    .gitter.write: no visible global function definition for ‘write.table’
    .imageSpot: no visible global function definition for ‘image’
    .imageSpot: no visible global function definition for ‘gray’
    .register2d: no visible global function definition for ‘ccf’
    .rotateAngle: no visible binding for global variable ‘var’
    .rotateAngle2: no visible binding for global variable ‘var’
    .sinCor: no visible global function definition for ‘ksmooth’
    .sinCor : <anonymous>: no visible global function definition for ‘cor’
    .threshold: no visible global function definition for
     ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘txtProgressBar’
    gitter: no visible global function definition for ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘par’
    gitter.demo: no visible global function definition for ‘browseURL’
    gitter.read: no visible global function definition for ‘read.table’
    plot.gitter: no visible global function definition for ‘quantile’
    summary.gitter: no visible global function definition for ‘head’
    Undefined global functions or variables:
     abline browseURL ccf cor dnorm embed gray head image ksmooth lines
     median par quantile read.table runmed sd setTxtProgressBar text
     txtProgressBar var write.table
    Consider adding
     importFrom("grDevices", "gray")
     importFrom("graphics", "abline", "image", "lines", "par", "text")
     importFrom("stats", "ccf", "cor", "dnorm", "embed", "ksmooth",
     "median", "quantile", "runmed", "sd", "var")
     importFrom("utils", "browseURL", "head", "read.table",
     "setTxtProgressBar", "txtProgressBar", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64