CRAN Package Check Results for Package gitter

Last updated on 2015-07-02 19:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.4 1.86 32.40 34.26 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.4 2.30 31.42 33.73 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.4 68.37 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.4 64.44 NOTE
r-devel-osx-x86_64-clang 1.0.4 66.74 NOTE
r-devel-windows-ix86+x86_64 1.0.4 8.00 49.00 57.00 NOTE
r-patched-linux-x86_64 1.0.4 1.94 32.05 33.99 NOTE
r-release-linux-x86_64 1.0.4 1.86 32.36 34.22 NOTE
r-release-osx-x86_64-mavericks 1.0.4 OK
r-release-windows-ix86+x86_64 1.0.4 7.00 59.00 66.00 OK
r-oldrel-windows-ix86+x86_64 1.0.4 15.00 86.00 101.00 OK

Check Details

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.gitter summary.gitter
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.4
Check: R code for possible problems
Result: NOTE
    .colonyPeaks: no visible global function definition for ‘runmed’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘dnorm’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘median’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘sd’
    .colonyPeaks: no visible global function definition for ‘median’
    .colonyPeaks: no visible global function definition for ‘abline’
    .colonyPeaks: no visible global function definition for ‘lines’
    .colonyPeaks: no visible global function definition for ‘text’
    .colonyPeaks: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘ksmooth’
    .estimateWindow2: no visible global function definition for ‘median’
    .findOptimalThreshold: no visible global function definition for
     ‘quantile’
    .findSlope: no visible global function definition for ‘var’
    .fixOuterPeaks: no visible global function definition for ‘sd’
    .fixOuterPeaks: no visible global function definition for ‘median’
    .getFlags: no visible global function definition for ‘median’
    .getPeaks: no visible global function definition for ‘embed’
    .gitter.write: no visible global function definition for ‘write.table’
    .imageSpot: no visible global function definition for ‘image’
    .imageSpot: no visible global function definition for ‘gray’
    .register2d: no visible global function definition for ‘ccf’
    .rotateAngle: no visible binding for global variable ‘var’
    .rotateAngle2: no visible binding for global variable ‘var’
    .sinCor: no visible global function definition for ‘ksmooth’
    .sinCor : <anonymous>: no visible global function definition for ‘cor’
    .threshold: no visible global function definition for
     ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘txtProgressBar’
    gitter: no visible global function definition for ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘par’
    gitter.demo: no visible global function definition for ‘browseURL’
    gitter.read: no visible global function definition for ‘read.table’
    plot.gitter: no visible global function definition for ‘quantile’
    summary.gitter: no visible global function definition for ‘head’
    Undefined global functions or variables:
     abline browseURL ccf cor dnorm embed gray head image ksmooth lines
     median par quantile read.table runmed sd setTxtProgressBar text
     txtProgressBar var write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.4
Check: R code for possible problems
Result: NOTE
    .colonyPeaks: no visible global function definition for ‘runmed’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘dnorm’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘median’
    .colonyPeaks : <anonymous>: no visible global function definition for
     ‘sd’
    .colonyPeaks: no visible global function definition for ‘median’
    .colonyPeaks: no visible global function definition for ‘abline’
    .colonyPeaks: no visible global function definition for ‘lines’
    .colonyPeaks: no visible global function definition for ‘text’
    .colonyPeaks: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘quantile’
    .estimateWindow2: no visible global function definition for ‘ksmooth’
    .estimateWindow2: no visible global function definition for ‘median’
    .findOptimalThreshold: no visible global function definition for
     ‘quantile’
    .findSlope: no visible global function definition for ‘var’
    .fixOuterPeaks: no visible global function definition for ‘sd’
    .fixOuterPeaks: no visible global function definition for ‘median’
    .getFlags: no visible global function definition for ‘median’
    .getPeaks: no visible global function definition for ‘embed’
    .gitter.write: no visible global function definition for ‘write.table’
    .imageSpot: no visible global function definition for ‘image’
    .imageSpot: no visible global function definition for ‘gray’
    .register2d: no visible global function definition for ‘ccf’
    .rotateAngle: no visible binding for global variable ‘var’
    .rotateAngle2: no visible binding for global variable ‘var’
    .sinCor: no visible global function definition for ‘ksmooth’
    .sinCor : <anonymous>: no visible global function definition for ‘cor’
    .threshold: no visible global function definition for
     ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘txtProgressBar’
    gitter: no visible global function definition for ‘setTxtProgressBar’
    gitter: no visible global function definition for ‘par’
    gitter.demo: no visible global function definition for ‘browseURL’
    gitter.read: no visible global function definition for ‘read.table’
    plot.gitter: no visible global function definition for ‘quantile’
    summary.gitter: no visible global function definition for ‘head’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64