CRAN Package Check Results for Package glmmBUGS

Last updated on 2018-04-22 23:50:11 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4.0 3.42 37.54 40.96 WARN
r-devel-linux-x86_64-debian-gcc 2.4.0 2.53 33.09 35.62 WARN
r-devel-linux-x86_64-fedora-clang 2.4.0 55.11 WARN
r-devel-linux-x86_64-fedora-gcc 2.4.0 53.24 WARN
r-devel-windows-ix86+x86_64 2.4.0 8.00 45.00 53.00 FAIL
r-devel-osx-x86_64 2.4.0 ERROR
r-patched-linux-x86_64 2.4.0 2.67 40.69 43.36 WARN
r-patched-solaris-x86 2.4.0 82.50 WARN
r-release-linux-x86_64 2.4.0 1.80 51.19 52.99 OK
r-release-windows-ix86+x86_64 2.4.0 4.00 84.00 88.00 OK
r-release-osx-x86_64 2.4.0 ERROR
r-oldrel-windows-ix86+x86_64 2.4.0 5.00 56.00 61.00 OK

Check Details

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017/Debian) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
    (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))
    (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/Sweave
    .sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texmf/tex/latex/lm/t1lmr.fd))
    (/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd)
    (/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/ts1aet
    t.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    Segmentation fault
    Makefile:10: recipe for target 'jags.pdf' failed
    make[1]: *** [jags.pdf] Error 139
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    Error in buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running ‘make’ failed
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017/Debian) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
    (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))
    (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex/Sweave.s
    ty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texmf/tex/latex/lm/t1lmr.fd))
    (/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd)
    (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex/ts1aett.
    fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    Segmentation fault
    Makefile:10: recipe for target 'jags.pdf' failed
    make[1]: *** [jags.pdf] Error 139
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    Error in buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running ‘make’ failed
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.18> and hyphenation patterns for 57 language(s) loaded.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/size12.clo))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/data/gannet/ripley/R/R-clang/share/texmf/tex/latex/Sweave.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/lm/t1lmr.fd))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aett.fd)
    (/data/gannet/ripley/R/R-clang/share/texmf/tex/latex/ts1aett.fd)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    
    xdvipdfmx:fatal: File ended prematurely
    
    
    Output file removed.
    make[1]: *** [Makefile:10: jags.pdf] Segmentation fault (core dumped)
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    Error in buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running 'make' failed
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.18> and hyphenation patterns for 57 language(s) loaded.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/size12.clo))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/data/gannet/ripley/R/R-devel/share/texmf/tex/latex/Sweave.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/lm/t1lmr.fd))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aett.fd)
    (/data/gannet/ripley/R/R-devel/share/texmf/tex/latex/ts1aett.fd)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    
    xdvipdfmx:fatal: File ended prematurely
    
    
    Output file removed.
    make[1]: *** [Makefile:10: jags.pdf] Segmentation fault (core dumped)
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    Error in buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running 'make' failed
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.4.0
Check: re-building of vignette outputs
Result: FAIL
    
Flavor: r-devel-windows-ix86+x86_64

Version: 2.4.0
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64, r-patched-solaris-x86

Version: 2.4.0
Check: tests
Result: ERROR
     Running ‘bym.R’ [3s/8s]
    Running the tests in ‘tests/bym.R’ failed.
    Last 13 lines of output:
     + checkChain(kParams, c("intercept", "SDCountySpatial"))
     + dev.off()
     +
     + kentucky = mergeBugsData(kentucky, kSummary)
     +
     + if(require('sp', quietly=TRUE)) {
     + pdf("spplotBym.pdf",height=4,width=8)
     + print(spplot(kentucky, "FittedRateCounty.mean"))
     + dev.off()
     + }
     +
     + }
     Error in R2OpenBUGS::bugs(forBugs$ragged, inits = int2, model.file = "bym.txt", :
     Cannot find the OpenBUGS program
     Execution halted
Flavor: r-devel-osx-x86_64

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017/Debian) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
    (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))
    (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/Sweave
    .sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texmf/tex/latex/lm/t1lmr.fd))
    (/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd)
    (/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/ts1aet
    t.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    Segmentation fault
    Makefile:10: recipe for target 'jags.pdf' failed
    make[1]: *** [jags.pdf] Error 139
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
    Error in buildVignettes(dir = "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running ‘make’ failed
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 2.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘R2jags’
    xelatex -interaction=nonstopmode jags.tex;
    This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017) (preloaded format=xelatex)
     restricted \write18 enabled.
    entering extended mode
    (./jags.tex
    LaTeX2e <2017-04-15>
    Babel <3.17> and hyphenation patterns for 57 language(s) loaded.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/size12.clo))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/home/ripley/R/cc/share/texmf/tex/latex/Sweave.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/graphics-def/xetex.def)))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/lm/t1lmr.fd))
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/local/texlive/2017/texmf-dist/tex/latex/ae/t1aett.fd)
    (/home/ripley/R/cc/share/texmf/tex/latex/ts1aett.fd)
    (/usr/local/texlive/2017/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    
    xdvipdfmx:fatal: File ended prematurely
    
    
    Output file removed.
    *** Error code 139
    make: Fatal error: Command failed for target `jags.pdf'
    Current working directory /home/ripley/R/packages/tests32/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running 'make' failed
    Execution halted
Flavor: r-patched-solaris-x86

Version: 2.4.0
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘BRugs’ ‘R2jags’ ‘rjags’
Flavor: r-release-osx-x86_64

Version: 2.4.0
Check: tests
Result: ERROR
     Running ‘bym.R’ [4s/6s]
    Running the tests in ‘tests/bym.R’ failed.
    Last 13 lines of output:
     + checkChain(kParams, c("intercept", "SDCountySpatial"))
     + dev.off()
     +
     + kentucky = mergeBugsData(kentucky, kSummary)
     +
     + if(require('sp', quietly=TRUE)) {
     + pdf("spplotBym.pdf",height=4,width=8)
     + print(spplot(kentucky, "FittedRateCounty.mean"))
     + dev.off()
     + }
     +
     + }
     Error in R2OpenBUGS::bugs(forBugs$ragged, inits = int2, model.file = "bym.txt", :
     Cannot find the OpenBUGS program
     Execution halted
Flavor: r-release-osx-x86_64

Version: 2.4.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    (/usr/local/texlive/2016basic/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
    (/usr/local/texlive/2016basic/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/ts1enc.def))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/t1enc.def))
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file jags.aux.
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: xetex
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/ae/t1aett.fd)
    (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/ts1aett.fd)
    (/usr/local/texlive/2016basic/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
    Syntax Error: Cannot allocate page cache
    make: *** [jags.pdf] Segmentation fault: 11
    Error in buildVignettes(dir = "/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.4/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
     running 'make' failed
    Execution halted
Flavor: r-release-osx-x86_64