CRAN Package Check Results for Package glmulti

Last updated on 2015-09-01 12:48:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.7 1.42 20.36 21.78 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.7 1.31 20.07 21.38 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.7 43.95 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.7 40.43 NOTE
r-devel-osx-x86_64-clang 1.0.7 39.55 NOTE
r-devel-windows-ix86+x86_64 1.0.7 7.00 36.00 43.00 NOTE
r-patched-linux-x86_64 1.0.7 1.44 21.60 23.04 NOTE
r-patched-solaris-sparc 1.0.7 265.00 NOTE
r-patched-solaris-x86 1.0.7 71.20 NOTE
r-release-linux-x86_64 1.0.7 1.80 22.73 24.54 NOTE
r-release-osx-x86_64-mavericks 1.0.7 NOTE
r-release-windows-ix86+x86_64 1.0.7 7.00 38.00 45.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.7 9.00 46.00 55.00 NOTE

Check Details

Version: 1.0.7
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.glmulti’
    Found the platform-specific device:
     ‘windows’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    coef.glmulti: no visible global function definition for ‘coef’
    coef.glmulti : <anonymous>: no visible global function definition for
     ‘qt’
    coef.glmulti: no visible global function definition for ‘qnorm’
    coef.glmulti: no visible global function definition for ‘qt’
    plot.glmulti: no visible global function definition for ‘plot’
    plot.glmulti: no visible global function definition for ‘abline’
    plot.glmulti: no visible global function definition for ‘par’
    plot.glmulti : <anonymous>: no visible global function definition for
     ‘delete.response’
    plot.glmulti : <anonymous>: no visible global function definition for
     ‘terms’
    plot.glmulti: no visible global function definition for ‘barplot’
    predict.glmulti: no visible global function definition for ‘predict’
    predict.glmulti : <anonymous>: no visible global function definition
     for ‘qt’
    predict.glmulti: no visible global function definition for ‘qnorm’
    predict.glmulti: no visible global function definition for ‘qt’
    aic,ANY: no visible global function definition for ‘logLik’
    aicc,ANY: no visible global function definition for ‘logLik’
    aicc,ANY: no visible global function definition for ‘nobs’
    bic,ANY: no visible global function definition for ‘logLik’
    bic,ANY: no visible global function definition for ‘nobs’
    consensus,list : <anonymous>: no visible global function definition for
     ‘as.formula’
    getfit,coxph: no visible global function definition for ‘logLik’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘model.frame’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘as.formula’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘logLik’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘flush.console’
    glmulti,character-character-ANY-ANY : <anonymous>: no visible global
     function definition for ‘as.formula’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘plot’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘abline’
    glmulti,character-character-ANY-ANY: no visible binding for global
     variable ‘as.formula’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘regsubsets’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘resid’
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘lm’
    glmulti,character-missing-ANY-missing: no visible global function
     definition for ‘as.formula’
    glmulti,formula-missing-ANY-missing: no visible global function
     definition for ‘terms’
    glmulti,formula-missing-ANY-missing: no visible global function
     definition for ‘as.formula’
    glmulti,glm-missing-ANY-missing: no visible global function definition
     for ‘formula’
    glmulti,list-ANY-ANY-ANY: no visible global function definition for
     ‘flush.console’
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for ‘terms’
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for ‘formula’
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for ‘logLik’
    glmulti,list-ANY-ANY-ANY: no visible binding for global variable
     ‘as.formula’
    glmulti,lm-missing-ANY-missing: no visible global function definition
     for ‘formula’
    qaic,ANY: no visible global function definition for ‘logLik’
    qaicc,ANY: no visible global function definition for ‘logLik’
    qaicc,ANY: no visible global function definition for ‘nobs’
    write,glmulti: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.formula barplot coef delete.response flush.console formula
     lm logLik model.frame nobs par plot predict qnorm qt regsubsets resid
     terms write.table
    Consider adding
     importFrom("graphics", "abline", "barplot", "par", "plot")
     importFrom("stats", "as.formula", "coef", "delete.response", "formula",
     "lm", "logLik", "model.frame", "nobs", "predict", "qnorm",
     "qt", "resid", "terms")
     importFrom("utils", "flush.console", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.7
Check: Rd line widths
Result: NOTE
    Rd file 'glmulti.Rd':
     \usage lines wider than 90 characters:
     glmulti(y, xr, data, exclude = c(), name = "glmulti.analysis", intercept = TRUE, marginality = FALSE, bunch=30, chunk = 1, chunks = 1,
     level = 2, minsize = 0, maxsize = -1, minK = 0, maxK = -1, method = "h", crit = "aic", confsetsize = 100, popsize = 100 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     # It explains the general approach and shows how to use glmulti with mixed models from the lme4 package.
     # this procedure allows support of arbitrarily any fitting function, or the use of sophisticated constraints on the model structure
    
    Rd file 'write.Rd':
     \usage lines wider than 90 characters:
     write(x, file = "data", ncolumns = if (is.character(x)) 1 else 5, append = FALSE, sep = " ")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.glmulti’
    Found the platform-specific device:
     ‘windows’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘regsubsets’
    Undefined global functions or variables:
     regsubsets
Flavor: r-devel-osx-x86_64-clang

Version: 1.0.7
Check: R code for possible problems
Result: NOTE
    coef.glmulti: no visible global function definition for 'coef'
    coef.glmulti : <anonymous>: no visible global function definition for
     'qt'
    coef.glmulti: no visible global function definition for 'qnorm'
    coef.glmulti: no visible global function definition for 'qt'
    plot.glmulti: no visible global function definition for 'plot'
    plot.glmulti: no visible global function definition for 'abline'
    plot.glmulti: no visible global function definition for 'windows'
    plot.glmulti: no visible global function definition for 'par'
    plot.glmulti : <anonymous>: no visible global function definition for
     'delete.response'
    plot.glmulti : <anonymous>: no visible global function definition for
     'terms'
    plot.glmulti: no visible global function definition for 'barplot'
    predict.glmulti: no visible global function definition for 'predict'
    predict.glmulti : <anonymous>: no visible global function definition
     for 'qt'
    predict.glmulti: no visible global function definition for 'qnorm'
    predict.glmulti: no visible global function definition for 'qt'
    aic,ANY: no visible global function definition for 'logLik'
    aicc,ANY: no visible global function definition for 'logLik'
    aicc,ANY: no visible global function definition for 'nobs'
    bic,ANY: no visible global function definition for 'logLik'
    bic,ANY: no visible global function definition for 'nobs'
    consensus,list : <anonymous>: no visible global function definition for
     'as.formula'
    getfit,coxph: no visible global function definition for 'logLik'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'model.frame'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'as.formula'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'logLik'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'flush.console'
    glmulti,character-character-ANY-ANY : <anonymous>: no visible global
     function definition for 'as.formula'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'plot'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'abline'
    glmulti,character-character-ANY-ANY: no visible binding for global
     variable 'as.formula'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'regsubsets'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'resid'
    glmulti,character-character-ANY-ANY: no visible global function
     definition for 'lm'
    glmulti,character-missing-ANY-missing: no visible global function
     definition for 'as.formula'
    glmulti,formula-missing-ANY-missing: no visible global function
     definition for 'terms'
    glmulti,formula-missing-ANY-missing: no visible global function
     definition for 'as.formula'
    glmulti,glm-missing-ANY-missing: no visible global function definition
     for 'formula'
    glmulti,list-ANY-ANY-ANY: no visible global function definition for
     'flush.console'
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for 'terms'
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for 'formula'
    glmulti,list-ANY-ANY-ANY : modeval: no visible global function
     definition for 'logLik'
    glmulti,list-ANY-ANY-ANY: no visible binding for global variable
     'as.formula'
    glmulti,lm-missing-ANY-missing: no visible global function definition
     for 'formula'
    qaic,ANY: no visible global function definition for 'logLik'
    qaicc,ANY: no visible global function definition for 'logLik'
    qaicc,ANY: no visible global function definition for 'nobs'
    write,glmulti: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     abline as.formula barplot coef delete.response flush.console formula
     lm logLik model.frame nobs par plot predict qnorm qt regsubsets resid
     terms windows write.table
    Consider adding
     importFrom("grDevices", "windows")
     importFrom("graphics", "abline", "barplot", "par", "plot")
     importFrom("stats", "as.formula", "coef", "delete.response", "formula",
     "lm", "logLik", "model.frame", "nobs", "predict", "qnorm",
     "qt", "resid", "terms")
     importFrom("utils", "flush.console", "write.table")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.glmulti’
    Found the platform-specific device:
     ‘windows’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘regsubsets’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0.7
Check: R code for possible problems
Result: NOTE
    glmulti,character-character-ANY-ANY: no visible global function
     definition for ‘regsubsets’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64