CRAN Package Check Results for Package grofit

Last updated on 2018-04-26 10:46:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1-1 3.89 23.54 27.43 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.1-1 2.99 20.47 23.46 ERROR
r-devel-linux-x86_64-fedora-clang 1.1.1-1 73.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.1-1 68.35 NOTE
r-devel-windows-ix86+x86_64 1.1.1-1 8.00 72.00 80.00 NOTE
r-patched-linux-x86_64 1.1.1-1 3.41 25.99 29.40 ERROR
r-patched-solaris-x86 1.1.1-1 95.20 NOTE
r-release-linux-x86_64 1.1.1-1 3.38 25.92 29.30 ERROR
r-release-windows-ix86+x86_64 1.1.1-1 8.00 72.00 80.00 NOTE
r-release-osx-x86_64 1.1.1-1 NOTE
r-oldrel-windows-ix86+x86_64 1.1.1-1 3.00 71.00 74.00 NOTE
r-oldrel-osx-x86_64 1.1.1-1 NOTE

Check Details

Version: 1.1.1-1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.1-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.drBootSpline plot.drFit plot.drFitSpline plot.gcBootSpline
     plot.gcFit plot.gcFitModel plot.gcFitSpline summary.drBootSpline
     summary.drFit summary.drFitSpline summary.gcBootSpline summary.gcFit
     summary.gcFitModel summary.gcFitSpline
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1.1-1
Check: R code for possible problems
Result: NOTE
    drBootSpline: no visible global function definition for ‘is’
    drBootSpline: no visible global function definition for ‘sd’
    drFit: no visible global function definition for ‘is’
    drFitSpline: no visible global function definition for ‘is’
    drFitSpline: no visible global function definition for ‘smooth.spline’
    drFitSpline: no visible global function definition for ‘predict’
    gcBootSpline: no visible global function definition for ‘is’
    gcFit: no visible global function definition for ‘is’
    gcFit: no visible global function definition for ‘plot’
    gcFit: no visible global function definition for ‘title’
    gcFit: no visible global function definition for ‘legend’
    gcFit: no visible global function definition for ‘graphics.off’
    gcFitModel: no visible global function definition for ‘is’
    gcFitModel: no visible global function definition for ‘as.formula’
    gcFitModel: no visible global function definition for ‘nls’
    gcFitModel: no visible global function definition for ‘fitted.values’
    gcFitSpline: no visible global function definition for ‘is’
    gcFitSpline: no visible global function definition for ‘smooth.spline’
    gcFitSpline: no visible global function definition for ‘predict’
    gcFitSpline: no visible global function definition for ‘lowess’
    grofit: no visible global function definition for ‘is’
    low.integrate: no visible global function definition for
     ‘smooth.spline’
    low.integrate : f: no visible global function definition for ‘predict’
    low.integrate: no visible global function definition for ‘integrate’
    plot.drBootSpline : empty.plot: no visible global function definition
     for ‘plot’
    plot.drBootSpline : empty.plot: no visible global function definition
     for ‘lines’
    plot.drBootSpline: no visible global function definition for ‘colors’
    plot.drBootSpline: no visible global function definition for ‘dev.new’
    plot.drBootSpline: no visible global function definition for ‘plot’
    plot.drBootSpline: no visible global function definition for ‘points’
    plot.drBootSpline: no visible global function definition for ‘hist’
    plot.drFit: no visible global function definition for ‘plot’
    plot.drFit: no visible global function definition for ‘title’
    plot.drFitSpline: no visible global function definition for ‘colors’
    plot.drFitSpline: no visible global function definition for ‘plot’
    plot.drFitSpline: no visible global function definition for ‘points’
    plot.drFitSpline: no visible global function definition for ‘lines’
    plot.gcBootSpline : empty.plot: no visible global function definition
     for ‘plot’
    plot.gcBootSpline : empty.plot: no visible global function definition
     for ‘lines’
    plot.gcBootSpline: no visible global function definition for ‘colors’
    plot.gcBootSpline: no visible global function definition for ‘plot’
    plot.gcBootSpline: no visible global function definition for ‘points’
    plot.gcBootSpline: no visible global function definition for ‘dev.new’
    plot.gcBootSpline: no visible global function definition for ‘par’
    plot.gcBootSpline: no visible global function definition for ‘hist’
    plot.gcFit: no visible global function definition for ‘colors’
    plot.gcFit: no visible global function definition for ‘dev.new’
    plot.gcFit: no visible global function definition for ‘plot’
    plot.gcFit: no visible global function definition for ‘legend’
    plot.gcFit: no visible global function definition for ‘title’
    plot.gcFitModel: no visible global function definition for ‘colors’
    plot.gcFitModel: no visible global function definition for ‘points’
    plot.gcFitModel: no visible global function definition for ‘lines’
    plot.gcFitModel: no visible global function definition for ‘plot’
    plot.gcFitSpline: no visible global function definition for ‘colors’
    plot.gcFitSpline: no visible global function definition for ‘points’
    plot.gcFitSpline: no visible global function definition for ‘lines’
    plot.gcFitSpline: no visible global function definition for ‘plot’
    ran.data: no visible global function definition for ‘runif’
    ran.data: no visible global function definition for ‘rnorm’
    summary.drBootSpline: no visible global function definition for ‘sd’
    summary.gcBootSpline: no visible global function definition for ‘sd’
    Undefined global functions or variables:
     as.formula colors dev.new fitted.values graphics.off hist integrate
     is legend lines lowess nls par plot points predict rnorm runif sd
     smooth.spline title
    Consider adding
     importFrom("grDevices", "colors", "dev.new", "graphics.off")
     importFrom("graphics", "hist", "legend", "lines", "par", "plot",
     "points", "title")
     importFrom("methods", "is")
     importFrom("stats", "as.formula", "fitted.values", "integrate",
     "lowess", "nls", "predict", "rnorm", "runif", "sd",
     "smooth.spline")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.1-1
Check: examples
Result: ERROR
    Running examples in ‘grofit-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: drBootSpline
    > ### Title: Function to create a bootstrap sample of splines fitted to
    > ### dose-response curves.
    > ### Aliases: drBootSpline
    >
    > ### ** Examples
    >
    > x <- 1:50
    > y <- 30/(1+exp(-0.5*(25-x)))+rnorm(50)
    > TestRun <- drBootSpline(x,y,"ID",grofit.control(nboot.dr=50))
    === Bootstrapping of dose response curve ==========
    --- EC 50 -----------------------------------------
    
    Mean : 24.62002002002 StDev : 0.327928793460531
    90% CI: 24.0805771547774 90% CI: 25.1594628852626
    95% CI: 23.9772795848374 95% CI: 25.2627604552027
    
    > print(summary(TestRun))
     Length Class Mode
    raw.conc 41 -none- numeric
    raw.test 41 -none- numeric
    drID 1 -none- character
    boot.conc 50000 -none- numeric
    boot.test 50000 -none- numeric
    boot.drSpline 50 -none- list
    ec50.boot 50 -none- numeric
    bootFlag 1 -none- logical
    control 16 grofit.control list
    > plot(TestRun)
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64