CRAN Package Check Results for Package gsmaRt

Last updated on 2014-07-29 22:46:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 3.56 43.41 46.97 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 3.36 42.50 45.86 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 107.02 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 100.76 NOTE
r-devel-osx-x86_64-clang 1.0 85.97 NOTE
r-devel-windows-ix86+x86_64 1.0 12.00 67.00 79.00 NOTE
r-patched-linux-x86_64 1.0 3.68 46.25 49.92 NOTE
r-patched-solaris-sparc 1.0 600.00 NOTE
r-patched-solaris-x86 1.0 142.90 NOTE
r-release-linux-ix86 1.0 4.54 59.46 64.00 NOTE
r-release-linux-x86_64 1.0 3.69 46.66 50.35 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 12.00 69.00 81.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 13.00 82.00 95.00 NOTE

Check Details

Version: 1.0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     GEOquery R2HTML qvalue rgl scatterplot3d xtable limma
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     GEOquery R2HTML limma qvalue rgl scatterplot3d xtable
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     GEOquery R2HTML limma qvalue rgl scatterplot3d xtable
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in inst/doc :
     gsmaRt.Rnw
    A vignettes directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'analyse.gsmart.Rd':
     \usage lines wider than 90 characters:
     analyse.gsmart(X, response, gs.list, nrot = 1000, tests = c("W", "G"), one.sided = FALSE, verbose = FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'gsmaRt.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64