CRAN Package Check Results for Package gtools

Last updated on 2017-08-17 20:46:42.

Check Details

Version: 3.5.0
Check: R code for possible problems
Result: NOTE
    Found the following possibly unsafe calls:
    File ‘gtools/R/unByteCode.R’:
     unlockBinding(name, env = env)
    
    checkReverseDependencies: no visible global function definition for
     ‘available.packages’
    getDependencies: no visible global function definition for
     ‘installed.packages’
    getDependencies: no visible global function definition for
     ‘available.packages’
    getDependencies: no visible global function definition for
     ‘flush.console’
    keywords: no visible global function definition for ‘na.omit’
    keywords : topics: no visible global function definition for
     ‘help.search’
    loadedPackages : <anonymous>: no visible global function definition for
     ‘packageVersion’
    quantcut: no visible global function definition for ‘quantile’
    rdirichlet: no visible global function definition for ‘rgamma’
    running: no visible global function definition for ‘new’
    smartbind: no visible global function definition for ‘head’
    stars.pval: no visible global function definition for ‘symnum’
    Undefined global functions or variables:
     available.packages flush.console head help.search installed.packages
     na.omit new packageVersion quantile rgamma symnum
    Consider adding
     importFrom("methods", "new")
     importFrom("stats", "na.omit", "quantile", "rgamma", "symnum")
     importFrom("utils", "available.packages", "flush.console", "head",
     "help.search", "installed.packages", "packageVersion")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.5.0
Check: compiled code
Result: NOTE
    File ‘gtools/libs/gtools.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.5.0
Check: examples
Result: ERROR
    Running examples in ‘gtools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: keywords
    > ### Title: List valid keywords for R man pages
    > ### Aliases: keywords
    > ### Keywords: documentation
    >
    > ### ** Examples
    >
    > ## Show all valid R keywords
    > keywords()
    GROUPED Keywords
    ----------------
    
    Graphics
     aplot & Add to Existing Plot / internal plot
     dplot & Computations Related to Plotting
     hplot & High-Level Plots
     iplot & Interacting with Plots
     color & Color, Palettes etc
     dynamic & Dynamic Graphics
     device & Graphical Devices
    
    Basics
     sysdata & Basic System Variables [!= S]
     datasets & Datasets available by data(.) [!= S]
     data & Environments, Scoping, Packages [~= S]
     manip & Data Manipulation
     attribute & Data Attributes
     classes & Data Types (not OO)
     & character & Character Data ("String") Operations
     & complex & Complex Numbers
     & category & Categorical Data
     & NA & Missing Values [!= S]
     list & Lists
     chron & Dates and Times
     package & Package Summaries
    
    Mathematics
     array & Matrices and Arrays
     & algebra & Linear Algebra
     arith & Basic Arithmetic and Sorting [!= S]
     math & Mathematical Calculus etc. [!= S]
     logic & Logical Operators
     optimize & Optimization
     symbolmath & "Symbolic Math", as polynomials, fractions
     graphs & Graphs, (not graphics), e.g. dendrograms
    
    Programming, Input/Ouput, and Miscellaneous
    
     programming & Programming
     & interface& Interfaces to Other Languages
     IO & Input/output
     & file & Files
     & connection& Connections
     & database & Interfaces to databases
     iteration & Looping and Iteration
     methods & Methods and Generic Functions
     print & Printing
     error & Error Handling
    
     environment & Session Environment
     internal & Internal Objects (not part of API)
     utilities & Utilities
     misc & Miscellaneous
     documentation & Documentation
     debugging & Debugging Tools
    
    Statistics
    
     datagen & Functions for generating data sets
     distribution & Probability Distributions and Random Numbers
     univar & simple univariate statistics [!= S]
     htest & Statistical Inference
     models & Statistical Models
     & regression& Regression
     & &nonlinear& Non-linear Regression (only?)
     robust & Robust/Resistant Techniques
     design & Designed Experiments
     multivariate & Multivariate Techniques
     ts & Time Series
     survival & Survival Analysis
     nonparametric & Nonparametric Statistics [w/o 'smooth']
     smooth & Curve (and Surface) Smoothing
     & loess & Loess Objects
     cluster & Clustering
     tree & Regression and Classification Trees
     survey & Complex survey samples
    
    
    MASS (2, 1997)
    --------------
    
    add the following keywords :
    
     classif & Classification ['class' package]
     spatial & Spatial Statistics ['spatial' package]
     neural & Neural Networks ['nnet' package]
    
    >
    > ## Show keywords associated with the 'merge' function
    > keywords(merge)
    
    Execution halted
Flavor: r-release-osx-x86_64

Version: 3.5.0
Check: for unstated dependencies in ‘tests’
Result: FAIL
    
Flavor: r-release-osx-x86_64