CRAN Package Check Results for Package gtx

Last updated on 2015-08-04 14:48:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.8 1.12 22.61 23.73 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.8 1.24 22.00 23.24 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.8 44.68 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.8 43.34 NOTE
r-devel-osx-x86_64-clang 0.0.8 43.03 NOTE
r-devel-windows-ix86+x86_64 0.0.8 5.00 37.00 42.00 NOTE
r-patched-linux-x86_64 0.0.8 1.09 21.71 22.80 NOTE
r-patched-solaris-sparc 0.0.8 312.00 NOTE
r-patched-solaris-x86 0.0.8 66.40 NOTE
r-release-linux-x86_64 0.0.8 1.15 22.53 23.68 NOTE
r-release-osx-x86_64-mavericks 0.0.8 NOTE
r-release-windows-ix86+x86_64 0.0.8 7.00 36.00 43.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.8 5.00 38.00 43.00 NOTE

Check Details

Version: 0.0.8
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.8
Check: R code for possible problems
Result: NOTE
    abf.normal : <anonymous>: no visible global function definition for
     ‘dnorm’
    abf.t : <anonymous>: no visible global function definition for ‘dt’
    abf.t : <anonymous>: no visible global function definition for ‘dnorm’
    chi2ncp: no visible global function definition for ‘qchisq’
    chi2ncp: no visible global function definition for ‘pchisq’
    chi2ncp: no visible global function definition for ‘uniroot’
    chi2ncp : <anonymous>: no visible global function definition for
     ‘pchisq’
    coeff.extract: no visible global function definition for ‘coefficients’
    contrasting.rainbow: no visible global function definition for
     ‘rainbow’
    fitmix: no visible global function definition for ‘rexp’
    fitmix: no visible global function definition for ‘sd’
    fitmix.plot: no visible global function definition for ‘density’
    fitmix.plot: no visible global function definition for ‘plot’
    fitmix.plot: no visible global function definition for ‘rug’
    fitmix.plot: no visible global function definition for ‘polygon’
    fitmix.plot: no visible global function definition for ‘lines’
    fitmix.plot: no visible global function definition for ‘dnorm’
    fitmix.plot: no visible global function definition for ‘rainbow’
    fitmix.plot : <anonymous>: no visible global function definition for
     ‘dnorm’
    fitmix.plot: no visible global function definition for ‘legend’
    fitmix.simulate: no visible global function definition for ‘rnorm’
    fitmix1: no visible global function definition for ‘quantile’
    fitmix1: no visible global function definition for ‘sd’
    fitmix1 : <anonymous>: no visible global function definition for
     ‘dnorm’
    gls.approx.logistic: no visible global function definition for
     ‘as.formula’
    gls.approx.logistic: no visible global function definition for
     ‘predict’
    gls.approx.logistic: no visible global function definition for ‘glm’
    gls.approx.logistic: no visible binding for global variable
     ‘na.exclude’
    grs.filter.Qrs: no visible global function definition for ‘pchisq’
    grs.onesnp.apply: no visible global function definition for ‘update’
    grs.onesnp.apply: no visible global function definition for
     ‘update.formula’
    grs.onesnp.apply: no visible global function definition for ‘formula’
    grs.plot: no visible global function definition for ‘plot’
    grs.plot: no visible global function definition for ‘qnorm’
    grs.plot: no visible global function definition for ‘abline’
    grs.plot: no visible global function definition for ‘lines’
    grs.plot: no visible global function definition for ‘points’
    grs.summary: no visible global function definition for ‘pchisq’
    hapmap.read.haplotypes: no visible global function definition for
     ‘read.table’
    hapmap.snpdata: no visible global function definition for ‘na.omit’
    multipheno.T2: no visible global function definition for ‘cor’
    multipheno.T2: no visible global function definition for ‘pchisq’
    read.snpdata.impute: no visible global function definition for
     ‘read.table’
    read.snpdata.mach: no visible global function definition for
     ‘read.table’
    read.snpdata.plink: no visible global function definition for
     ‘read.table’
    run.blat: no visible global function definition for ‘read.table’
    stepdown.moments2: no visible global function definition for ‘qchisq’
    stepdown.moments2: no visible global function definition for ‘pchisq’
    stepup.moments2: no visible global function definition for ‘qchisq’
    stepup.moments2: no visible global function definition for ‘pchisq’
    test.subsample: no visible global function definition for ‘update’
    test.subsample: no visible global function definition for
     ‘update.formula’
    test.subsample: no visible global function definition for ‘formula’
    test.subsample: no visible global function definition for ‘binom.test’
    Undefined global functions or variables:
     abline as.formula binom.test coefficients cor density dnorm dt
     formula glm legend lines na.exclude na.omit pchisq plot points
     polygon predict qchisq qnorm quantile rainbow read.table rexp rnorm
     rug sd uniroot update update.formula
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "abline", "legend", "lines", "plot", "points",
     "polygon", "rug")
     importFrom("stats", "as.formula", "binom.test", "coefficients", "cor",
     "density", "dnorm", "dt", "formula", "glm", "na.exclude",
     "na.omit", "pchisq", "predict", "qchisq", "qnorm",
     "quantile", "rexp", "rnorm", "sd", "uniroot", "update",
     "update.formula")
     importFrom("utils", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.0.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "ashg2012.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.2.1/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.2.1/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'ashg2012.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `D:/RCompile/recent/R-32\unhbox\voidb@x \penalty \@M \ {}1.
    1/share/texmf/tex/latex/Sweave.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.0.8
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "ashg2012.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.1.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.1.3/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'ashg2012.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `D:/RCompile/recent/R-31\unhbox\voidb@x \penalty \@M \ {}1.
    3/share/texmf/tex/latex/Sweave.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64