CRAN Package Check Results for Package hexbin

Last updated on 2015-04-21 06:47:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.27.0 1.82 35.19 37.01 NOTE
r-devel-linux-x86_64-debian-gcc 1.27.0 1.80 36.10 37.90 NOTE
r-devel-linux-x86_64-fedora-clang 1.27.0 79.02 NOTE
r-devel-linux-x86_64-fedora-gcc 1.27.0 73.13 NOTE
r-devel-osx-x86_64-clang 1.27.0 66.59 NOTE
r-devel-windows-ix86+x86_64 1.27.0 16.00 68.00 84.00 NOTE
r-patched-linux-x86_64 1.27.0 1.79 36.22 38.01 NOTE
r-patched-solaris-sparc 1.27.0 449.50 NOTE
r-patched-solaris-x86 1.27.0 98.10 NOTE
r-release-linux-x86_64 1.27.0 1.73 35.54 37.28 NOTE
r-release-osx-x86_64-mavericks 1.27.0 WARN
r-release-osx-x86_64-snowleopard 1.27.0 WARN
r-release-windows-ix86+x86_64 1.27.0 8.00 62.00 70.00 NOTE
r-oldrel-windows-ix86+x86_64 1.27.0 7.00 91.00 98.00 NOTE

Check Details

Version: 1.27.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Biobase’ ‘affy’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.27.0
Check: R code for possible problems
Result: NOTE
    plotMAhex: no visible global function definition for ‘maA’
    plotMAhex: no visible global function definition for ‘maM’
    plotMAhex: no visible global function definition for ‘maW’
    plotMAhex: no visible global function definition for ‘MA.RG’
    plotMAhex: no visible global function definition for ‘exprs’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.27.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘marray’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.27.0
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘hexagon_binning.Rnw’
     ...
    > hdiffplot(erode(hbF, cdfcut = 0.25), erode(hbM, cdfcut = 0.25),
    + unzoom = 1.3)
    Warning in if (nchar(main) > 0) grid.text(main, y = unit(1, "npc") + unit(1.5, :
     the condition has length > 1 and only the first element will be used
    
    > library("marray")
    
     When sourcing ‘hexagon_binning.R’:
    Error: there is no package called ‘marray’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.27.0
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in if (nchar(main) > 0) grid.text(main, y = unit(1, "npc") + unit(1.5, :
     the condition has length > 1 and only the first element will be used
    
    Error: processing vignette 'hexagon_binning.Rnw' failed with diagnostics:
     chunk 9 (label = marray1)
    Error in library("marray") : there is no package called ‘marray’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.27.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘marray’ ‘affy’ ‘Biobase’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.27.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘limma’
Flavor: r-release-osx-x86_64-snowleopard