CRAN Package Check Results for Package hierarchicalDS

Last updated on 2014-11-23 03:48:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.01 4.37 55.64 60.01 NOTE
r-devel-linux-x86_64-debian-gcc 2.01 4.24 54.26 58.49 NOTE
r-devel-linux-x86_64-fedora-clang 2.01 147.47 NOTE
r-devel-linux-x86_64-fedora-gcc 2.01 134.76 NOTE
r-devel-osx-x86_64-clang 2.01 117.58 NOTE
r-devel-windows-ix86+x86_64 2.01 11.00 83.00 94.00 NOTE
r-patched-linux-x86_64 2.01 4.51 57.21 61.72 NOTE
r-patched-solaris-sparc 2.01 769.30 NOTE
r-patched-solaris-x86 2.01 183.80 NOTE
r-release-linux-ix86 2.01 5.49 67.46 72.95 NOTE
r-release-linux-x86_64 2.01 4.46 57.19 61.65 NOTE
r-release-osx-x86_64-mavericks 2.01 ERROR
r-release-osx-x86_64-snowleopard 2.01 NOTE
r-release-windows-ix86+x86_64 2.01 18.00 85.00 103.00 NOTE
r-oldrel-windows-ix86+x86_64 2.01 13.00 86.00 99.00 NOTE

Check Details

Version: 2.01
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘truncnorm’ ‘MASS’ ‘mvtnorm’ ‘Matrix’ ‘coda’ ‘spsurvey’ ‘MCMCpack’
     ‘xtable’ ‘mc2d’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.01
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘TWS2012_Conn.aux’ ‘TWS2012_Conn.bbl’ ‘TWS2012_Conn.blg’
     ‘TWS2012_Conn.log’ ‘TWS2012_Conn.nav’ ‘TWS2012_Conn.out’
     ‘TWS2012_Conn.pdf’ ‘TWS2012_Conn.snm’ ‘TWS2012_Conn.tex’
     ‘TWS2012_Conn.tex.sav’ ‘TWS2012_Conn.toc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.01
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MCMCpack’ ‘Matrix’ ‘coda’ ‘mc2d’ ‘mvtnorm’ ‘truncnorm’ ‘xtable’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘MCMCpack’ ‘coda’ ‘mc2d’ ‘mvtnorm’ ‘spsurvey’ ‘truncnorm’
     ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.01
Check: R code for possible problems
Result: NOTE
    convert.HDS.to.mcmc: no visible global function definition for ‘mcmc’
    mcmc_ds: no visible global function definition for ‘rtruncnorm’
    mcmc_ds: no visible global function definition for ‘rmvnorm’
    mcmc_ds: no visible global function definition for ‘pmvnorm’
    mcmc_ds: no visible global function definition for ‘dmvnorm’
    mcmc_ds: no visible global function definition for ‘rdirichlet’
    probit.fct : <anonymous>: no visible global function definition for
     ‘pmvnorm’
    simulate_data: no visible global function definition for ‘rmvnorm’
    switch_sample_prior: no visible global function definition for
     ‘rdirichlet’
    table.mcmc: no visible global function definition for ‘xtable’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.01
Check: Rd line widths
Result: NOTE
    Rd file 'probit.fct.Rd':
     \examples lines wider than 100 characters:
     legend(1,.2,legend=c("Detection","Conditional detection","Duplicate detection","Pooled detection"),pch=1:4,bty="n")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.01
Check: package dependencies
Result: ERROR
    Package required but not available: ‘spsurvey’
    
    Depends: includes the non-default packages:
     ‘truncnorm’ ‘MASS’ ‘mvtnorm’ ‘Matrix’ ‘coda’ ‘spsurvey’ ‘MCMCpack’
     ‘xtable’ ‘mc2d’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.01
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'MCMCpack' 'Matrix' 'coda' 'mc2d' 'mvtnorm' 'truncnorm' 'xtable'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'MASS' 'MCMCpack' 'coda' 'mc2d' 'mvtnorm' 'spsurvey' 'truncnorm'
     'xtable'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard