CRAN Package Check Results for Package hyperSpec

Last updated on 2014-04-19 01:48:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.98-20140220 3.91 147.14 151.05 NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang 0.98-20140220 345.76 NOTE
r-devel-linux-x86_64-fedora-gcc 0.98-20140220 329.59 NOTE
r-devel-macosx-x86_64-clang 0.98-20140220 278.03 NOTE
r-devel-macosx-x86_64-gcc 0.98-20140220 ERROR
r-devel-windows-ix86+x86_64 0.98-20140220 9.00 216.00 225.00 NOTE
r-patched-linux-x86_64 0.98-20140220 3.88 146.46 150.34 NOTE
r-patched-solaris-sparc 0.98-20140220 1543.00 NOTE
r-patched-solaris-x86 0.98-20140220 329.50 NOTE
r-release-linux-ix86 0.98-20140220 9.00 228.00 237.00 NOTE
r-release-linux-x86_64 0.98-20140220 4.16 148.51 152.67 NOTE
r-release-macosx-x86_64 0.98-20140220 NOTE
r-release-windows-ix86+x86_64 0.98-20140220 10.00 222.00 232.00 NOTE
r-oldrel-windows-ix86+x86_64 0.98-20140220 10.00 217.00 227.00 NOTE

Check Details

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    Warning: local assignments to syntactic functions: ~
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140220
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘latticeExtra’ ‘ggplot2’ ‘latticist’
Flavor: r-devel-macosx-x86_64-gcc

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    qmixlegend: no visible global function definition for ‘ggplot’
    qmixlegend: no visible global function definition for ‘aes’
    qmixlegend: no visible global function definition for ‘geom_point’
    qmixlegend: no visible global function definition for ‘ylab’
    qmixlegend: no visible global function definition for ‘xlab’
    qmixlegend: no visible global function definition for ‘geom_rect’
    qmixlegend: no visible global function definition for ‘aes_string’
    qmixlegend: no visible global function definition for ‘theme’
    qmixlegend: no visible global function definition for
     ‘scale_fill_identity’
    qmixlegend: no visible global function definition for
     ‘scale_colour_identity’
    qmixtile: no visible global function definition for ‘aes_string’
    qmixtile: no visible global function definition for ‘ggplot’
    qmixtile: no visible global function definition for ‘geom_tile’
    qmixtile: no visible global function definition for
     ‘scale_fill_identity’
    qmixtile: no visible global function definition for ‘theme’
    qplotc: no visible global function definition for ‘aes_string’
    qplotc: no visible global function definition for ‘ggplot’
    qplotc: no visible global function definition for ‘geom_point’
    qplotc: no visible global function definition for ‘xlab’
    qplotmap: no visible global function definition for ‘aes_string’
    qplotmap: no visible global function definition for ‘ggplot’
    qplotmap: no visible global function definition for ‘geom_tile’
    qplotmap: no visible global function definition for ‘coord_equal’
    qplotmap: no visible global function definition for ‘scale_x_discrete’
    qplotmap: no visible global function definition for
     ‘scale_x_continuous’
    qplotmap: no visible global function definition for ‘scale_y_discrete’
    qplotmap: no visible global function definition for
     ‘scale_y_continuous’
    qplotmap: no visible global function definition for ‘labs’
    qplotmixmap: no visible global function definition for ‘coord_equal’
    qplotmixmap: no visible global function definition for ‘xlab’
    qplotmixmap: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘aes_string’
    qplotspc: no visible global function definition for ‘ggplot’
    qplotspc: no visible global function definition for ‘geom_line’
    qplotspc: no visible global function definition for ‘xlab’
    qplotspc: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘facet_grid’
    qplotspc: no visible global function definition for ‘theme’
    qplotspc: no visible global function definition for ‘element_text’
Flavor: r-devel-macosx-x86_64-gcc

Version: 0.98-20140220
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘latticeExtra’, ‘ggplot2’
Flavor: r-devel-macosx-x86_64-gcc

Version: 0.98-20140220
Check: examples
Result: ERROR
    Running examples in ‘hyperSpec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plotmap
    > ### Title: Plot a Map and Identify/Select Spectra in the Map 'levelplot'
    > ### functions for hyperSpec objects. An image or map of a summary value
    > ### of each spectrum is plotted. Spectra may be identified by mouse
    > ### click.
    > ### Aliases: levelplot levelplot,formula,hyperSpec-method
    > ### levelplot,hyperSpec,missing-method map.identify plotmap plotvoronoi
    > ### Keywords: hplot
    >
    > ### ** Examples
    >
    > ## Not run:
    > ##D vignette (plotting)
    > ##D vignette (introduction)
    > ## End(Not run)
    >
    > levelplot (spc ~ y * x, chondro [,,1003]) # properly rotated
    > plotmap (chondro [,,1003])
    >
    > # plot spectra matrix
    > levelplot (spc ~ .wavelength * t, laser, contour = TRUE, col = "#00000080")
    > # see also plotmat
    >
    > plotmap (chondro, clusters ~ x * y)
    >
    > # Voronoi plots
    > smpl <- sample (chondro, 300)
    > plotmap (smpl, clusters ~ x * y)
    > if (require (tripack))
    + plotvoronoi (smpl, clusters ~ x * y)
    Loading required package: tripack
    Loading required package: latticeExtra
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘latticeExtra’
    Error in plotvoronoi(smpl, clusters ~ x * y) :
     package latticeExtra is needed for Voronoi plots.
    Execution halted
Flavor: r-devel-macosx-x86_64-gcc

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
Flavors: r-devel-windows-ix86+x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.98-20140220
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: latticeExtra
    Loading required package: RColorBrewer
    
    Attaching package: ‘latticeExtra’
    
    The following object is masked from ‘package:ggplot2’:
    
     layer
    
    Loading required package: deldir
    deldir 0.1-5
    Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Warning in .local(.Object, ...) :
     The logbook is deprecated and soon be removed.
    'opts' is deprecated. Use 'theme' instead. (Deprecated; last used in version 0.9.1)
    'theme_blank' is deprecated. Use 'element_blank' instead. (Deprecated; last used in version 0.9.1)
    make: Fatal error in reader: Makefile, line 2: Unexpected end of line seen
    Current working directory /home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86