CRAN Package Check Results for Package hyperSpec

Last updated on 2014-04-24 23:48:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.98-20140220 3.92 144.92 148.84 NOTE
r-devel-linux-x86_64-debian-gcc 0.98-20140220 4.01 148.18 152.18 NOTE
r-devel-linux-x86_64-fedora-clang 0.98-20140220 343.01 NOTE
r-devel-linux-x86_64-fedora-gcc 0.98-20140220 331.09 NOTE
r-devel-osx-x86_64-clang 0.98-20140220 253.77 NOTE
r-devel-osx-x86_64-gcc 0.98-20140220 ERROR
r-devel-windows-ix86+x86_64 0.98-20140220 10.00 207.00 217.00 NOTE
r-patched-linux-x86_64 0.98-20140220 4.04 147.55 151.59 NOTE
r-patched-solaris-sparc 0.98-20140220 1543.00 NOTE
r-patched-solaris-x86 0.98-20140220 329.10 NOTE
r-release-linux-ix86 0.98-20140220 6.00 260.00 266.00 NOTE
r-release-linux-x86_64 0.98-20140220 4.30 150.97 155.27 NOTE
r-release-osx-x86_64-mavericks 0.98-20140220 WARN
r-release-osx-x86_64-snowleopard 0.98-20140220 NOTE
r-release-windows-ix86+x86_64 0.98-20140220 9.00 221.00 230.00 NOTE
r-oldrel-windows-ix86+x86_64 0.98-20140220 10.00 212.00 222.00 NOTE

Check Details

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    Warning: local assignments to syntactic functions: ~
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140220
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘latticeExtra’ ‘ggplot2’ ‘latticist’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    qmixlegend: no visible global function definition for ‘ggplot’
    qmixlegend: no visible global function definition for ‘aes’
    qmixlegend: no visible global function definition for ‘geom_point’
    qmixlegend: no visible global function definition for ‘ylab’
    qmixlegend: no visible global function definition for ‘xlab’
    qmixlegend: no visible global function definition for ‘geom_rect’
    qmixlegend: no visible global function definition for ‘aes_string’
    qmixlegend: no visible global function definition for ‘theme’
    qmixlegend: no visible global function definition for
     ‘scale_fill_identity’
    qmixlegend: no visible global function definition for
     ‘scale_colour_identity’
    qmixtile: no visible global function definition for ‘aes_string’
    qmixtile: no visible global function definition for ‘ggplot’
    qmixtile: no visible global function definition for ‘geom_tile’
    qmixtile: no visible global function definition for
     ‘scale_fill_identity’
    qmixtile: no visible global function definition for ‘theme’
    qplotc: no visible global function definition for ‘aes_string’
    qplotc: no visible global function definition for ‘ggplot’
    qplotc: no visible global function definition for ‘geom_point’
    qplotc: no visible global function definition for ‘xlab’
    qplotmap: no visible global function definition for ‘aes_string’
    qplotmap: no visible global function definition for ‘ggplot’
    qplotmap: no visible global function definition for ‘geom_tile’
    qplotmap: no visible global function definition for ‘coord_equal’
    qplotmap: no visible global function definition for ‘scale_x_discrete’
    qplotmap: no visible global function definition for
     ‘scale_x_continuous’
    qplotmap: no visible global function definition for ‘scale_y_discrete’
    qplotmap: no visible global function definition for
     ‘scale_y_continuous’
    qplotmap: no visible global function definition for ‘labs’
    qplotmixmap: no visible global function definition for ‘coord_equal’
    qplotmixmap: no visible global function definition for ‘xlab’
    qplotmixmap: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘aes_string’
    qplotspc: no visible global function definition for ‘ggplot’
    qplotspc: no visible global function definition for ‘geom_line’
    qplotspc: no visible global function definition for ‘xlab’
    qplotspc: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘facet_grid’
    qplotspc: no visible global function definition for ‘theme’
    qplotspc: no visible global function definition for ‘element_text’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.98-20140220
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘latticeExtra’, ‘ggplot2’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.98-20140220
Check: examples
Result: ERROR
    Running examples in ‘hyperSpec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plotmap
    > ### Title: Plot a Map and Identify/Select Spectra in the Map 'levelplot'
    > ### functions for hyperSpec objects. An image or map of a summary value
    > ### of each spectrum is plotted. Spectra may be identified by mouse
    > ### click.
    > ### Aliases: levelplot levelplot,formula,hyperSpec-method
    > ### levelplot,hyperSpec,missing-method map.identify plotmap plotvoronoi
    > ### Keywords: hplot
    >
    > ### ** Examples
    >
    > ## Not run:
    > ##D vignette (plotting)
    > ##D vignette (introduction)
    > ## End(Not run)
    >
    > levelplot (spc ~ y * x, chondro [,,1003]) # properly rotated
    > plotmap (chondro [,,1003])
    >
    > # plot spectra matrix
    > levelplot (spc ~ .wavelength * t, laser, contour = TRUE, col = "#00000080")
    > # see also plotmat
    >
    > plotmap (chondro, clusters ~ x * y)
    >
    > # Voronoi plots
    > smpl <- sample (chondro, 300)
    > plotmap (smpl, clusters ~ x * y)
    > if (require (tripack))
    + plotvoronoi (smpl, clusters ~ x * y)
    Loading required package: tripack
    Loading required package: latticeExtra
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘latticeExtra’
    Error in plotvoronoi(smpl, clusters ~ x * y) :
     package latticeExtra is needed for Voronoi plots.
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.98-20140220
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
Flavors: r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.98-20140220
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: latticeExtra
    Loading required package: RColorBrewer
    
    Attaching package: ‘latticeExtra’
    
    The following object is masked from ‘package:ggplot2’:
    
     layer
    
    Loading required package: deldir
    deldir 0.1-5
    Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Warning in .local(.Object, ...) :
     The logbook is deprecated and soon be removed.
    'opts' is deprecated. Use 'theme' instead. (Deprecated; last used in version 0.9.1)
    'theme_blank' is deprecated. Use 'element_blank' instead. (Deprecated; last used in version 0.9.1)
    make: Fatal error in reader: Makefile, line 2: Unexpected end of line seen
    Current working directory /home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.98-20140220
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘playwith’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.98-20140220
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'baseline.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    gn_test/hyperSpec/vignettes/baseline.tex:31: ==> Fatal error occurred, no outp
    ut PDF file produced!
    Calls: <Anonymous> -> do.call -> <Anonymous> -> texi2pdf -> texi2dvi
    Execution halted
    make: *** [baseline.pdf] Error 1
    Error in buildVignettes(dir = "/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.98-20140220
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    581d378/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks