CRAN Package Check Results for Package hyperSpec

Last updated on 2014-12-22 17:51:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.98-20140523 3.58 139.42 143.00 NOTE
r-devel-linux-x86_64-debian-gcc 0.98-20140523 3.65 133.82 137.47 NOTE
r-devel-linux-x86_64-fedora-clang 0.98-20140523 291.45 NOTE
r-devel-linux-x86_64-fedora-gcc 0.98-20140523 279.01 NOTE
r-devel-osx-x86_64-clang 0.98-20140523 252.59 NOTE
r-devel-windows-ix86+x86_64 0.98-20140523 11.00 199.00 210.00 NOTE
r-patched-linux-x86_64 0.98-20140523 3.69 139.81 143.50 NOTE
r-patched-solaris-sparc 0.98-20140523 1462.50 NOTE
r-patched-solaris-x86 0.98-20140523 304.70 NOTE
r-release-linux-ix86 0.98-20140523 4.51 164.67 169.18 NOTE
r-release-linux-x86_64 0.98-20140523 3.83 141.61 145.44 NOTE
r-release-osx-x86_64-mavericks 0.98-20140523 NOTE
r-release-osx-x86_64-snowleopard 0.98-20140523 NOTE
r-release-windows-ix86+x86_64 0.98-20140523 12.00 228.00 240.00 NOTE
r-oldrel-windows-ix86+x86_64 0.98-20140523 13.00 226.00 239.00 NOTE

Check Details

Version: 0.98-20140523
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘latticist’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    Warning: local assignments to syntactic functions: ~
    hy.unittest: no visible binding for global variable ‘is.test’
    hy.unittest: no visible global function definition for ‘clearLog’
    hy.unittest: no visible global function definition for ‘runTest’
    hy.unittest: no visible global function definition for ‘stats’
    hy.unittest: no visible global function definition for ‘Log’
    hy.unittest: no visible global function definition for ‘errorLog’
    legendright: no visible global function definition for ‘grid.layout’
    legendright: no visible global function definition for ‘unit’
    map.identify: no visible global function definition for ‘convertX’
    map.identify: no visible global function definition for ‘unit’
    map.identify: no visible global function definition for ‘convertY’
    map.identify: no visible global function definition for ‘grid.locator’
    map.identify: no visible global function definition for ‘grid.circle’
    map.identify: no visible global function definition for ‘gpar’
    map.sel.poly: no visible global function definition for
     ‘point.in.polygon’
    plotmat: no visible global function definition for ‘color.legend’
    plotspc: no visible binding for global variable ‘axis.break’
    qmixlegend: no visible global function definition for ‘ggplot’
    qmixlegend: no visible global function definition for ‘aes’
    qmixlegend: no visible global function definition for ‘geom_point’
    qmixlegend: no visible global function definition for ‘ylab’
    qmixlegend: no visible global function definition for ‘xlab’
    qmixlegend: no visible global function definition for ‘geom_rect’
    qmixlegend: no visible global function definition for ‘aes_string’
    qmixlegend: no visible global function definition for ‘theme’
    qmixlegend: no visible global function definition for ‘unit’
    qmixlegend: no visible global function definition for
     ‘scale_fill_identity’
    qmixlegend: no visible global function definition for
     ‘scale_colour_identity’
    qmixtile: no visible global function definition for ‘aes_string’
    qmixtile: no visible global function definition for ‘ggplot’
    qmixtile: no visible global function definition for ‘geom_tile’
    qmixtile: no visible global function definition for
     ‘scale_fill_identity’
    qmixtile: no visible global function definition for ‘theme’
    qplotc: no visible global function definition for ‘aes_string’
    qplotc: no visible global function definition for ‘ggplot’
    qplotc: no visible global function definition for ‘geom_point’
    qplotc: no visible global function definition for ‘xlab’
    qplotmap: no visible global function definition for ‘aes_string’
    qplotmap: no visible global function definition for ‘ggplot’
    qplotmap: no visible global function definition for ‘geom_tile’
    qplotmap: no visible global function definition for ‘coord_equal’
    qplotmap: no visible global function definition for ‘scale_x_discrete’
    qplotmap: no visible global function definition for
     ‘scale_x_continuous’
    qplotmap: no visible global function definition for ‘scale_y_discrete’
    qplotmap: no visible global function definition for
     ‘scale_y_continuous’
    qplotmap: no visible global function definition for ‘labs’
    qplotmixmap: no visible global function definition for ‘coord_equal’
    qplotmixmap: no visible global function definition for ‘xlab’
    qplotmixmap: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘aes_string’
    qplotspc: no visible global function definition for ‘ggplot’
    qplotspc: no visible global function definition for ‘geom_line’
    qplotspc: no visible global function definition for ‘xlab’
    qplotspc: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘facet_grid’
    qplotspc: no visible global function definition for ‘theme’
    qplotspc: no visible global function definition for ‘element_text’
    read.cytomat: no visible global function definition for ‘readMat’
    sel.poly: no visible global function definition for ‘grid.locator’
    sel.poly: no visible global function definition for ‘grid.points’
    sel.poly: no visible global function definition for ‘unit’
    sel.poly: no visible global function definition for ‘gpar’
    sel.poly: no visible global function definition for ‘grid.lines’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140523
Check: files in ‘vignettes’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘Rplots.pdf’
    Please remove them from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    hy.unittest: no visible binding for global variable 'is.test'
    hy.unittest: no visible global function definition for 'clearLog'
    hy.unittest: no visible global function definition for 'runTest'
    hy.unittest: no visible global function definition for 'stats'
    hy.unittest: no visible global function definition for 'Log'
    hy.unittest: no visible global function definition for 'errorLog'
    legendright: no visible global function definition for 'grid.layout'
    legendright: no visible global function definition for 'unit'
    map.identify: no visible global function definition for 'convertX'
    map.identify: no visible global function definition for 'unit'
    map.identify: no visible global function definition for 'convertY'
    map.identify: no visible global function definition for 'grid.locator'
    map.identify: no visible global function definition for 'grid.circle'
    map.identify: no visible global function definition for 'gpar'
    map.sel.poly: no visible global function definition for
     'point.in.polygon'
    plotmat: no visible global function definition for 'color.legend'
    plotspc: no visible binding for global variable 'axis.break'
    qmixlegend: no visible global function definition for 'ggplot'
    qmixlegend: no visible global function definition for 'aes'
    qmixlegend: no visible global function definition for 'geom_point'
    qmixlegend: no visible global function definition for 'ylab'
    qmixlegend: no visible global function definition for 'xlab'
    qmixlegend: no visible global function definition for 'geom_rect'
    qmixlegend: no visible global function definition for 'aes_string'
    qmixlegend: no visible global function definition for 'theme'
    qmixlegend: no visible global function definition for 'unit'
    qmixlegend: no visible global function definition for
     'scale_fill_identity'
    qmixlegend: no visible global function definition for
     'scale_colour_identity'
    qmixtile: no visible global function definition for 'aes_string'
    qmixtile: no visible global function definition for 'ggplot'
    qmixtile: no visible global function definition for 'geom_tile'
    qmixtile: no visible global function definition for
     'scale_fill_identity'
    qmixtile: no visible global function definition for 'theme'
    qplotc: no visible global function definition for 'aes_string'
    qplotc: no visible global function definition for 'ggplot'
    qplotc: no visible global function definition for 'geom_point'
    qplotc: no visible global function definition for 'xlab'
    qplotmap: no visible global function definition for 'aes_string'
    qplotmap: no visible global function definition for 'ggplot'
    qplotmap: no visible global function definition for 'geom_tile'
    qplotmap: no visible global function definition for 'coord_equal'
    qplotmap: no visible global function definition for 'scale_x_discrete'
    qplotmap: no visible global function definition for
     'scale_x_continuous'
    qplotmap: no visible global function definition for 'scale_y_discrete'
    qplotmap: no visible global function definition for
     'scale_y_continuous'
    qplotmap: no visible global function definition for 'labs'
    qplotmixmap: no visible global function definition for 'coord_equal'
    qplotmixmap: no visible global function definition for 'xlab'
    qplotmixmap: no visible global function definition for 'ylab'
    qplotspc: no visible global function definition for 'aes_string'
    qplotspc: no visible global function definition for 'ggplot'
    qplotspc: no visible global function definition for 'geom_line'
    qplotspc: no visible global function definition for 'xlab'
    qplotspc: no visible global function definition for 'ylab'
    qplotspc: no visible global function definition for 'facet_grid'
    qplotspc: no visible global function definition for 'theme'
    qplotspc: no visible global function definition for 'element_text'
    read.cytomat: no visible global function definition for 'readMat'
    sel.poly: no visible global function definition for 'grid.locator'
    sel.poly: no visible global function definition for 'grid.points'
    sel.poly: no visible global function definition for 'unit'
    sel.poly: no visible global function definition for 'gpar'
    sel.poly: no visible global function definition for 'grid.lines'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.98-20140523
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: deldir
    deldir 0.1-7
    
     PLEASE NOTE: The components "delsgs" and "summary" of the
     object returned by deldir() are now DATA FRAMES rather than
     matrices (as they were prior to release 0.0-18).
     See help("deldir").
    
     PLEASE NOTE: The process that deldir() uses for determining
     duplicated points has changed from that used in version
     0.0-9 of this package (and previously). See help("deldir").
    
    
    Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Warning in .local(.Object, ...) :
     The logbook is deprecated and soon be removed.
    make: Fatal error in reader: Makefile, line 2: Unexpected end of line seen
    Current working directory /home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.98-20140523
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘playwith’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 0.98-20140523
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Tracing function "spc.fit.poly.below" in package "hyperSpec"
    Untracing function "spc.fit.poly.below" in package "hyperSpec"
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'baseline.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `hyphenat.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    gn_test/hyperSpec/vignettes/baseline.tex:31: ==> Fatal error occurred, no outp
    ut PDF file produced!
    Calls: <Anonymous> -> do.call -> <Anonymous> -> texi2pdf -> texi2dvi
    Execution halted
    make: *** [baseline.pdf] Error 1
    Error in buildVignettes(dir = "/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavor: r-release-osx-x86_64-mavericks