CRAN Package Check Results for Package hyperSpec

Last updated on 2015-03-04 03:46:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.98-20140523 3.17 124.52 127.69 WARN
r-devel-linux-x86_64-debian-gcc 0.98-20140523 2.97 122.52 125.48 WARN
r-devel-linux-x86_64-fedora-clang 0.98-20140523 252.55 WARN
r-devel-linux-x86_64-fedora-gcc 0.98-20140523 241.89 WARN
r-devel-osx-x86_64-clang 0.98-20140523 235.39 WARN
r-devel-windows-ix86+x86_64 0.98-20140523 10.00 194.00 204.00 WARN
r-patched-linux-x86_64 0.98-20140523 3.95 143.82 147.76 WARN
r-patched-solaris-sparc 0.98-20140523 1482.40 WARN
r-patched-solaris-x86 0.98-20140523 299.10 WARN
r-release-linux-ix86 0.98-20140523 4.55 185.28 189.84 NOTE
r-release-linux-x86_64 0.98-20140523 4.09 147.75 151.84 NOTE
r-release-osx-x86_64-mavericks 0.98-20140523 WARN
r-release-osx-x86_64-snowleopard 0.98-20140523 NOTE
r-release-windows-ix86+x86_64 0.98-20140523 14.00 295.00 309.00 NOTE
r-oldrel-windows-ix86+x86_64 0.98-20140523 13.00 218.00 231.00 NOTE

Check Details

Version: 0.98-20140523
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘latticist’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140523
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘R.matlab’ ‘deldir’ ‘ggplot2’ ‘latticeExtra’ ‘plotrix’ ‘sp’ ‘svUnit’
     ‘tripack’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.98-20140523
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     .DollarNames.hyperSpec
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    Warning: local assignments to syntactic functions: ~
    hy.unittest: no visible binding for global variable ‘is.test’
    hy.unittest: no visible global function definition for ‘clearLog’
    hy.unittest: no visible global function definition for ‘runTest’
    hy.unittest: no visible global function definition for ‘stats’
    hy.unittest: no visible global function definition for ‘Log’
    hy.unittest: no visible global function definition for ‘errorLog’
    legendright: no visible global function definition for ‘grid.layout’
    legendright: no visible global function definition for ‘unit’
    map.identify: no visible global function definition for ‘convertX’
    map.identify: no visible global function definition for ‘unit’
    map.identify: no visible global function definition for ‘convertY’
    map.identify: no visible global function definition for ‘grid.locator’
    map.identify: no visible global function definition for ‘grid.circle’
    map.identify: no visible global function definition for ‘gpar’
    map.sel.poly: no visible global function definition for
     ‘point.in.polygon’
    plotmat: no visible global function definition for ‘color.legend’
    plotspc: no visible binding for global variable ‘axis.break’
    qmixlegend: no visible global function definition for ‘ggplot’
    qmixlegend: no visible global function definition for ‘aes’
    qmixlegend: no visible global function definition for ‘geom_point’
    qmixlegend: no visible global function definition for ‘ylab’
    qmixlegend: no visible global function definition for ‘xlab’
    qmixlegend: no visible global function definition for ‘geom_rect’
    qmixlegend: no visible global function definition for ‘aes_string’
    qmixlegend: no visible global function definition for ‘theme’
    qmixlegend: no visible global function definition for ‘unit’
    qmixlegend: no visible global function definition for
     ‘scale_fill_identity’
    qmixlegend: no visible global function definition for
     ‘scale_colour_identity’
    qmixtile: no visible global function definition for ‘aes_string’
    qmixtile: no visible global function definition for ‘ggplot’
    qmixtile: no visible global function definition for ‘geom_tile’
    qmixtile: no visible global function definition for
     ‘scale_fill_identity’
    qmixtile: no visible global function definition for ‘theme’
    qplotc: no visible global function definition for ‘aes_string’
    qplotc: no visible global function definition for ‘ggplot’
    qplotc: no visible global function definition for ‘geom_point’
    qplotc: no visible global function definition for ‘xlab’
    qplotmap: no visible global function definition for ‘aes_string’
    qplotmap: no visible global function definition for ‘ggplot’
    qplotmap: no visible global function definition for ‘geom_tile’
    qplotmap: no visible global function definition for ‘coord_equal’
    qplotmap: no visible global function definition for ‘scale_x_discrete’
    qplotmap: no visible global function definition for
     ‘scale_x_continuous’
    qplotmap: no visible global function definition for ‘scale_y_discrete’
    qplotmap: no visible global function definition for
     ‘scale_y_continuous’
    qplotmap: no visible global function definition for ‘labs’
    qplotmixmap: no visible global function definition for ‘coord_equal’
    qplotmixmap: no visible global function definition for ‘xlab’
    qplotmixmap: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘aes_string’
    qplotspc: no visible global function definition for ‘ggplot’
    qplotspc: no visible global function definition for ‘geom_line’
    qplotspc: no visible global function definition for ‘xlab’
    qplotspc: no visible global function definition for ‘ylab’
    qplotspc: no visible global function definition for ‘facet_grid’
    qplotspc: no visible global function definition for ‘theme’
    qplotspc: no visible global function definition for ‘element_text’
    read.cytomat: no visible global function definition for ‘readMat’
    sel.poly: no visible global function definition for ‘grid.locator’
    sel.poly: no visible global function definition for ‘grid.points’
    sel.poly: no visible global function definition for ‘unit’
    sel.poly: no visible global function definition for ‘gpar’
    sel.poly: no visible global function definition for ‘grid.lines’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.98-20140523
Check: for GNU extensions in Makefiles
Result: WARN
    Found the following file(s) containing GNU extensions:
     vignettes/Makefile
    Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
    $(wildcard), ifeq ... endif. See section ‘Writing portable packages’ in
    the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks

Version: 0.98-20140523
Check: files in ‘vignettes’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘Rplots.pdf’
    Please remove them from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
    hy.unittest: no visible binding for global variable 'is.test'
    hy.unittest: no visible global function definition for 'clearLog'
    hy.unittest: no visible global function definition for 'runTest'
    hy.unittest: no visible global function definition for 'stats'
    hy.unittest: no visible global function definition for 'Log'
    hy.unittest: no visible global function definition for 'errorLog'
    legendright: no visible global function definition for 'grid.layout'
    legendright: no visible global function definition for 'unit'
    map.identify: no visible global function definition for 'convertX'
    map.identify: no visible global function definition for 'unit'
    map.identify: no visible global function definition for 'convertY'
    map.identify: no visible global function definition for 'grid.locator'
    map.identify: no visible global function definition for 'grid.circle'
    map.identify: no visible global function definition for 'gpar'
    map.sel.poly: no visible global function definition for
     'point.in.polygon'
    plotmat: no visible global function definition for 'color.legend'
    plotspc: no visible binding for global variable 'axis.break'
    qmixlegend: no visible global function definition for 'ggplot'
    qmixlegend: no visible global function definition for 'aes'
    qmixlegend: no visible global function definition for 'geom_point'
    qmixlegend: no visible global function definition for 'ylab'
    qmixlegend: no visible global function definition for 'xlab'
    qmixlegend: no visible global function definition for 'geom_rect'
    qmixlegend: no visible global function definition for 'aes_string'
    qmixlegend: no visible global function definition for 'theme'
    qmixlegend: no visible global function definition for 'unit'
    qmixlegend: no visible global function definition for
     'scale_fill_identity'
    qmixlegend: no visible global function definition for
     'scale_colour_identity'
    qmixtile: no visible global function definition for 'aes_string'
    qmixtile: no visible global function definition for 'ggplot'
    qmixtile: no visible global function definition for 'geom_tile'
    qmixtile: no visible global function definition for
     'scale_fill_identity'
    qmixtile: no visible global function definition for 'theme'
    qplotc: no visible global function definition for 'aes_string'
    qplotc: no visible global function definition for 'ggplot'
    qplotc: no visible global function definition for 'geom_point'
    qplotc: no visible global function definition for 'xlab'
    qplotmap: no visible global function definition for 'aes_string'
    qplotmap: no visible global function definition for 'ggplot'
    qplotmap: no visible global function definition for 'geom_tile'
    qplotmap: no visible global function definition for 'coord_equal'
    qplotmap: no visible global function definition for 'scale_x_discrete'
    qplotmap: no visible global function definition for
     'scale_x_continuous'
    qplotmap: no visible global function definition for 'scale_y_discrete'
    qplotmap: no visible global function definition for
     'scale_y_continuous'
    qplotmap: no visible global function definition for 'labs'
    qplotmixmap: no visible global function definition for 'coord_equal'
    qplotmixmap: no visible global function definition for 'xlab'
    qplotmixmap: no visible global function definition for 'ylab'
    qplotspc: no visible global function definition for 'aes_string'
    qplotspc: no visible global function definition for 'ggplot'
    qplotspc: no visible global function definition for 'geom_line'
    qplotspc: no visible global function definition for 'xlab'
    qplotspc: no visible global function definition for 'ylab'
    qplotspc: no visible global function definition for 'facet_grid'
    qplotspc: no visible global function definition for 'theme'
    qplotspc: no visible global function definition for 'element_text'
    read.cytomat: no visible global function definition for 'readMat'
    sel.poly: no visible global function definition for 'grid.locator'
    sel.poly: no visible global function definition for 'grid.points'
    sel.poly: no visible global function definition for 'unit'
    sel.poly: no visible global function definition for 'gpar'
    sel.poly: no visible global function definition for 'grid.lines'
Flavors: r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.98-20140523
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: deldir
    deldir 0.1-7
    
     PLEASE NOTE: The components "delsgs" and "summary" of the
     object returned by deldir() are now DATA FRAMES rather than
     matrices (as they were prior to release 0.0-18).
     See help("deldir").
    
     PLEASE NOTE: The process that deldir() uses for determining
     duplicated points has changed from that used in version
     0.0-9 of this package (and previously). See help("deldir").
    
    
    Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
    Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col, :
     'x' values are not equispaced; output may be wrong
    Warning in hyperSpec:::.levelplot(x, data, ...) :
     Only first wavelength is used for plotting
    Warning in .local(.Object, ...) :
     The logbook is deprecated and soon be removed.
    make: Fatal error in reader: Makefile, line 2: Unexpected end of line seen
    Current working directory /home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec/vignettes
    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/hyperSpec.Rcheck/vign_test/hyperSpec") :
     running 'make' failed
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.98-20140523
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘playwith’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.98-20140523
Check: R code for possible problems
Result: NOTE
    Warning: local assignments to syntactic functions: ~
Flavors: r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64