CRAN Package Check Results for Package iCluster

Last updated on 2015-07-04 11:49:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.0 1.44 18.90 20.34 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.0 1.49 18.80 20.28 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.0 39.87 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.0 38.78 NOTE
r-devel-osx-x86_64-clang 2.1.0 38.30 NOTE
r-devel-windows-ix86+x86_64 2.1.0 8.00 31.00 39.00 NOTE
r-patched-linux-x86_64 2.1.0 1.46 18.90 20.36 NOTE
r-patched-solaris-sparc 2.1.0 271.20 NOTE
r-patched-solaris-x86 2.1.0 52.80 NOTE
r-release-linux-x86_64 2.1.0 1.58 18.94 20.52 NOTE
r-release-osx-x86_64-mavericks 2.1.0 NOTE
r-release-windows-ix86+x86_64 2.1.0 8.00 33.00 41.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1.0 7.00 59.00 66.00 NOTE

Check Details

Version: 2.1.0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘lattice’ ‘caTools’ ‘gdata’ ‘gtools’ ‘gplots’ ‘parallel’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘caTools’ ‘gdata’ ‘gplots’ ‘gtools’ ‘lattice’ ‘parallel’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    compute.pod: no visible global function definition for ‘model.matrix’
    iCluster: no visible global function definition for ‘kmeans’
    iCluster.RI: no visible global function definition for ‘median’
    iCluster2: no visible global function definition for ‘rnorm’
    iCluster2: no visible global function definition for ‘kmeans’
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘quantile’
    plotHeatmap: no visible global function definition for ‘cor’
    plotHeatmap: no visible global function definition for ‘hclust’
    plotHeatmap: no visible global function definition for ‘as.dist’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap : scale.fn: no visible binding for global variable ‘sd’
    plotHeatmap: no visible global function definition for ‘levelplot’
    plotRI: no visible global function definition for ‘plot’
    plotRI: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘image’
    plotiCluster: no visible global function definition for ‘gray’
    plotiCluster: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘mtext’
    plotiCluster: no visible global function definition for ‘box’
    predict.kmeans: no visible global function definition for ‘dist’
    tune.iCluster2: Error while checking: invalid ‘envir’ argument
    Undefined global functions or variables:
     as.dist axis bluered box cor dist gray hclust image kmeans levelplot
     median model.matrix mtext panel.abline panel.levelplot plot quantile
     rnorm sd
    
    Found the following calls to data() loading into the global environment:
    File ‘iCluster/R/tune.iCluster2.R’:
     data(glp)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    compute.pod: no visible global function definition for ‘model.matrix’
    iCluster: no visible global function definition for ‘kmeans’
    iCluster.RI: no visible global function definition for ‘median’
    iCluster2: no visible global function definition for ‘rnorm’
    iCluster2: no visible global function definition for ‘kmeans’
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘quantile’
    plotHeatmap: no visible global function definition for ‘cor’
    plotHeatmap: no visible global function definition for ‘hclust’
    plotHeatmap: no visible global function definition for ‘as.dist’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap : scale.fn: no visible binding for global variable ‘sd’
    plotHeatmap: no visible global function definition for ‘levelplot’
    plotRI: no visible global function definition for ‘plot’
    plotRI: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘image’
    plotiCluster: no visible global function definition for ‘gray’
    plotiCluster: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘mtext’
    plotiCluster: no visible global function definition for ‘box’
    predict.kmeans: no visible global function definition for ‘dist’
    tune.iCluster2: Error while checking: invalid 'envir' argument
    Undefined global functions or variables:
     as.dist axis bluered box cor dist gray hclust image kmeans levelplot
     median model.matrix mtext panel.abline panel.levelplot plot quantile
     rnorm sd
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘levelplot’
    tune.iCluster2: no visible binding for global variable ‘glp’
    tune.iCluster2: no visible global function definition for ‘mclapply’
    Undefined global functions or variables:
     bluered glp levelplot mclapply panel.abline panel.levelplot
    
    Found the following calls to data() loading into the global environment:
    File ‘iCluster/R/tune.iCluster2.R’:
     data(glp)
    See section ‘Good practice’ in ‘?data’.
Flavor: r-devel-osx-x86_64-clang

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    compute.pod: no visible global function definition for 'model.matrix'
    iCluster: no visible global function definition for 'kmeans'
    iCluster.RI: no visible global function definition for 'median'
    iCluster2: no visible global function definition for 'rnorm'
    iCluster2: no visible global function definition for 'kmeans'
    plotHeatmap: no visible global function definition for 'bluered'
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for 'panel.levelplot'
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for 'panel.abline'
    plotHeatmap: no visible global function definition for 'quantile'
    plotHeatmap: no visible global function definition for 'cor'
    plotHeatmap: no visible global function definition for 'hclust'
    plotHeatmap: no visible global function definition for 'as.dist'
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for 'panel.levelplot'
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for 'panel.abline'
    plotHeatmap : scale.fn: no visible binding for global variable 'sd'
    plotHeatmap: no visible global function definition for 'levelplot'
    plotRI: no visible global function definition for 'plot'
    plotRI: no visible global function definition for 'axis'
    plotiCluster: no visible global function definition for 'image'
    plotiCluster: no visible global function definition for 'gray'
    plotiCluster: no visible global function definition for 'axis'
    plotiCluster: no visible global function definition for 'mtext'
    plotiCluster: no visible global function definition for 'box'
    predict.kmeans: no visible global function definition for 'dist'
    tune.iCluster2: no visible global function definition for 'data'
    tune.iCluster2: no visible binding for global variable 'glp'
    tune.iCluster2: no visible global function definition for 'mclapply'
    Undefined global functions or variables:
     as.dist axis bluered box cor data dist glp gray hclust image kmeans
     levelplot mclapply median model.matrix mtext panel.abline
     panel.levelplot plot quantile rnorm sd
Flavor: r-devel-windows-ix86+x86_64

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘levelplot’
    tune.iCluster2: no visible binding for global variable ‘glp’
    tune.iCluster2: no visible global function definition for ‘mclapply’
    
    Found the following calls to data() loading into the global environment:
    File ‘iCluster/R/tune.iCluster2.R’:
     data(glp)
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘levelplot’
    tune.iCluster2: no visible binding for global variable ‘glp’
    tune.iCluster2: no visible global function definition for ‘mclapply’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64