CRAN Package Check Results for Package iRefR

Last updated on 2015-08-02 23:48:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.13 1.54 34.39 35.93 NOTE
r-devel-linux-x86_64-debian-gcc 1.13 1.46 35.02 36.48 NOTE
r-devel-linux-x86_64-fedora-clang 1.13 71.63 NOTE
r-devel-linux-x86_64-fedora-gcc 1.13 69.10 NOTE
r-devel-osx-x86_64-clang 1.13 74.45 NOTE
r-devel-windows-ix86+x86_64 1.13 6.00 61.00 67.00 NOTE
r-patched-linux-x86_64 1.13 1.63 36.53 38.16 NOTE
r-patched-solaris-sparc 1.13 439.10 NOTE
r-patched-solaris-x86 1.13 94.20 NOTE
r-release-linux-x86_64 1.13 1.48 36.51 37.99 NOTE
r-release-osx-x86_64-mavericks 1.13 NOTE
r-release-windows-ix86+x86_64 1.13 8.00 64.00 72.00 NOTE
r-oldrel-windows-ix86+x86_64 1.13 9.00 67.00 76.00 NOTE

Check Details

Version: 1.13
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘RBGL’ ‘graph’ ‘igraph’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.13
Check: R code for possible problems
Result: NOTE
    convert_MITAB_to_edgeList: no visible global function definition for
     ‘combn’
    convert_edgeList_to_graph: no visible global function definition for
     ‘ftM2graphNEL’
    convert_edgeList_to_graph: no visible global function definition for
     ‘graph.data.frame’
    convert_graph_to_edgeList: no visible global function definition for
     ‘edgeWeights’
    convert_graph_to_edgeList: no visible global function definition for
     ‘get.edgelist’
    convert_graph_to_edgeList: no visible global function definition for
     ‘E’
    create_id_conversion_table: no visible global function definition for
     ‘write.table’
    get_irefindex: no visible global function definition for ‘read.table’
    get_irefindex: no visible global function definition for
     ‘download.file’
    get_irefindex: no visible global function definition for ‘unzip’
    summary_graph: no visible global function definition for
     ‘connectedComp’
    summary_graph: no visible global function definition for ‘subGraph’
    summary_graph: no visible global function definition for ‘clusters’
    summary_graph: no visible global function definition for ‘subgraph’
    summary_graph: no visible global function definition for ‘plot’
    summary_graph: no visible binding for global variable
     ‘layout.fruchterman.reingold’
    Undefined global functions or variables:
     E clusters combn connectedComp download.file edgeWeights ftM2graphNEL
     get.edgelist graph.data.frame layout.fruchterman.reingold plot
     read.table subGraph subgraph unzip write.table
    Consider adding
     importFrom("graphics", "plot")
     importFrom("utils", "combn", "download.file", "read.table", "unzip",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.13
Check: R code for possible problems
Result: NOTE
    convert_edgeList_to_graph: no visible global function definition for
     ‘ftM2graphNEL’
    convert_edgeList_to_graph: no visible global function definition for
     ‘graph.data.frame’
    convert_graph_to_edgeList: no visible global function definition for
     ‘edgeWeights’
    convert_graph_to_edgeList: no visible global function definition for
     ‘get.edgelist’
    convert_graph_to_edgeList: no visible global function definition for
     ‘E’
    summary_graph: no visible global function definition for
     ‘connectedComp’
    summary_graph: no visible global function definition for ‘subGraph’
    summary_graph: no visible global function definition for ‘clusters’
    summary_graph: no visible global function definition for ‘subgraph’
    summary_graph: no visible binding for global variable
     ‘layout.fruchterman.reingold’
    Undefined global functions or variables:
     E clusters connectedComp edgeWeights ftM2graphNEL get.edgelist
     graph.data.frame layout.fruchterman.reingold subGraph subgraph
Flavor: r-devel-osx-x86_64-clang

Version: 1.13
Check: R code for possible problems
Result: NOTE
    convert_edgeList_to_graph: no visible global function definition for
     ‘ftM2graphNEL’
    convert_edgeList_to_graph: no visible global function definition for
     ‘graph.data.frame’
    convert_graph_to_edgeList: no visible global function definition for
     ‘edgeWeights’
    convert_graph_to_edgeList: no visible global function definition for
     ‘get.edgelist’
    convert_graph_to_edgeList: no visible global function definition for
     ‘E’
    summary_graph: no visible global function definition for
     ‘connectedComp’
    summary_graph: no visible global function definition for ‘subGraph’
    summary_graph: no visible global function definition for ‘clusters’
    summary_graph: no visible global function definition for ‘subgraph’
    summary_graph: no visible binding for global variable
     ‘layout.fruchterman.reingold’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64