CRAN Package Check Results for Package ibdreg

Last updated on 2015-08-03 03:47:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.5 1.38 14.70 16.07 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.5 1.37 14.36 15.73 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.5 29.90 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.5 29.41 NOTE
r-devel-osx-x86_64-clang 0.2.5 27.85 OK
r-devel-windows-ix86+x86_64 0.2.5 7.00 26.00 33.00 NOTE
r-patched-linux-x86_64 0.2.5 1.40 14.68 16.07 NOTE
r-patched-solaris-sparc 0.2.5 189.80 OK
r-patched-solaris-x86 0.2.5 39.60 OK
r-release-linux-x86_64 0.2.5 1.52 15.32 16.84 NOTE
r-release-osx-x86_64-mavericks 0.2.5 OK
r-release-windows-ix86+x86_64 0.2.5 8.00 25.00 33.00 OK
r-oldrel-windows-ix86+x86_64 0.2.5 10.00 30.00 40.00 OK

Check Details

Version: 0.2.5
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘perl’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.5
Check: R code for possible problems
Result: NOTE
    create.ibd.dat: no visible global function definition for ‘read.table’
    create.pairs.frame: no visible global function definition for ‘terms’
    ibd.moments: no visible global function definition for ‘var’
    ibdreg: no visible global function definition for ‘terms’
    ibdreg: no visible global function definition for ‘as.formula’
    linkage.tests: no visible global function definition for ‘pchisq’
    pchibar: no visible global function definition for ‘pchisq’
    plot.linkage.all: no visible global function definition for ‘plot’
    plot.linkage.all: no visible global function definition for ‘title’
    plotpval: no visible global function definition for ‘plot’
    plotpval: no visible global function definition for ‘lines’
    sim.ibd.var: no visible global function definition for ‘read.table’
    sim.mark.prop: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     as.formula lines pchisq plot read.table runif terms title var
    Consider adding
     importFrom("graphics", "lines", "plot", "title")
     importFrom("stats", "as.formula", "pchisq", "runif", "terms", "var")
     importFrom("utils", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64