CRAN Package Check Results for Package igraph

Last updated on 2017-05-26 12:48:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 165.48 115.14 280.62 WARN
r-devel-linux-x86_64-debian-gcc 1.0.1 174.19 117.20 291.38 WARN
r-devel-linux-x86_64-fedora-clang 1.0.1 510.72 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.1 454.49 WARN
r-patched-linux-x86_64 1.0.1 166.39 115.45 281.84 WARN
r-patched-solaris-sparc 1.0.1 3127.90 WARN
r-patched-solaris-x86 1.0.1 674.30 WARN
r-release-linux-x86_64 1.0.1 147.03 115.90 262.93 WARN
r-release-osx-x86_64 1.0.1 WARN
r-oldrel-windows-ix86+x86_64 1.0.1 522.00 228.00 750.00 NOTE
r-oldrel-osx-x86_64 1.0.1 NOTE

Additional issues

clang-ASAN clang-UBSAN gcc-ASAN gcc-UBSAN rchk valgrind

Check Details

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang

Version: 1.0.1
Check: S3 generic/method consistency
Result: WARN
    median:
     function(x, na.rm, ...)
    median.sir:
     function(x, na.rm)
    
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    .igraph.progress.txt: no visible global function definition for
     ‘txtProgressBar’
    .igraph.progress.txt: no visible global function definition for
     ‘setTxtProgressBar’
    .igraph.shape.circle.plot: no visible global function definition for
     ‘symbols’
    .igraph.shape.crectangle.plot: no visible global function definition
     for ‘symbols’
    .igraph.shape.csquare.plot: no visible global function definition for
     ‘symbols’
    .igraph.shape.pie.plot: no visible global function definition for
     ‘na.omit’
    .igraph.shape.raster.plot: no visible global function definition for
     ‘rasterImage’
    .igraph.shape.rectangle.plot: no visible global function definition for
     ‘symbols’
    .igraph.shape.sphere.plot : <anonymous>: no visible global function
     definition for ‘col2rgb’
    .igraph.shape.sphere.plot : <anonymous>: no visible global function
     definition for ‘as.raster’
    .igraph.shape.sphere.plot: no visible global function definition for
     ‘rasterImage’
    .igraph.shape.square.plot: no visible global function definition for
     ‘symbols’
    .igraph.shape.vrectangle.plot: no visible global function definition
     for ‘symbols’
    .print.edges.compressed.limit : fun: no visible global function
     definition for ‘capture.output’
    .print.graph.attributes: no visible global function definition for
     ‘capture.output’
    .tkigraph.about: no visible global function definition for
     ‘packageDescription’
    .tkigraph.by.hand: no visible global function definition for ‘edit’
    .tkigraph.calculate.clusters : plot.command: no visible global function
     definition for ‘hist’
    .tkigraph.calculate.clusters : plot.command: no visible global function
     definition for ‘dev.new’
    .tkigraph.calculate.clusters : plot.command: no visible global function
     definition for ‘plot’
    .tkigraph.degree : plot.command: no visible global function definition
     for ‘hist’
    .tkigraph.degree : plot.command: no visible global function definition
     for ‘dev.new’
    .tkigraph.degree : plot.command: no visible global function definition
     for ‘plot’
    .tkigraph.degree.dist: no visible global function definition for
     ‘dev.new’
    .tkigraph.degree.dist: no visible global function definition for ‘hist’
    .tkigraph.degree.dist: no visible global function definition for ‘plot’
    .tkigraph.degree.dist: no visible global function definition for
     ‘lines’
    .tkigraph.degree.dist: no visible global function definition for ‘coef’
    .tkigraph.degree.dist: no visible global function definition for
     ‘legend’
    .tkigraph.degree.dist: no visible global function definition for ‘vcov’
    .tkigraph.export.adjacency: no visible global function definition for
     ‘write.table’
    .tkigraph.export.edgelist: no visible global function definition for
     ‘write.table’
    .tkigraph.help : <anonymous>: no visible global function definition for
     ‘browseURL’
    .tkigraph.help.external: no visible global function definition for
     ‘browseURL’
    .tkigraph.import.adjacency: no visible global function definition for
     ‘read.table’
    .tkigraph.import.edgelist: no visible global function definition for
     ‘read.table’
    .tkigraph.motifs.draw: no visible global function definition for
     ‘dev.new’
    .tkigraph.motifs.draw: no visible global function definition for
     ‘layout’
    .tkigraph.motifs.draw: no visible global function definition for
     ‘layout.show’
    .tkigraph.motifs.draw: no visible global function definition for ‘par’
    .tkigraph.motifs.draw: no visible global function definition for ‘plot’
    .tkigraph.motifs.draw: no visible global function definition for ‘text’
    .tkigraph.motifs.find: no visible global function definition for
     ‘dev.new’
    .tkigraph.motifs.find: no visible global function definition for
     ‘barplot’
    .tkigraph.motifs.find: no visible global function definition for
     ‘layout’
    .tkigraph.motifs.find: no visible global function definition for
     ‘layout.show’
    .tkigraph.motifs.find: no visible global function definition for ‘par’
    .tkigraph.motifs.find: no visible global function definition for ‘plot’
    .tkigraph.motifs.find: no visible global function definition for ‘text’
    .tkigraph.plot : fun: no visible global function definition for
     ‘dev.new’
    .tkigraph.plot.comp: no visible global function definition for
     ‘rainbow’
    .tkigraph.showData : <anonymous>: no visible global function definition
     for ‘write.table’
    .tkigraph.spinglass.community.dialog : plot.communities: no visible
     global function definition for ‘rainbow’
    .tkplot.convert.color: no visible global function definition for
     ‘palette’
    asPhylo.communities: no visible global function definition for
     ‘reorder’
    asPhylo.igraphHRG: no visible global function definition for ‘reorder’
    as_phylo.communities: no visible global function definition for
     ‘reorder’
    as_phylo.igraphHRG: no visible global function definition for ‘reorder’
    cluster.distribution: no visible global function definition for ‘hist’
    component_distribution: no visible global function definition for
     ‘hist’
    degree.distribution: no visible global function definition for ‘hist’
    degree_distribution: no visible global function definition for ‘hist’
    dendPlotDendrogram: no visible global function definition for ‘plot’
    dendPlotHclust: no visible global function definition for ‘palette’
    dendPlotHclust: no visible global function definition for ‘plot’
    dendPlotHclust: no visible global function definition for ‘rect.hclust’
    dendPlotPhylo: no visible global function definition for ‘palette’
    dendPlotPhylo: no visible global function definition for ‘plot’
    deprecated: no visible global function definition for ‘packageName’
    ends: no visible global function definition for ‘na.omit’
    gclust.app: no visible global function definition for ‘coef’
    gclust.rsvt: no visible global function definition for ‘coef’
    hrgPlotDendrogram: no visible global function definition for ‘plot’
    hrgPlotHclust: no visible global function definition for ‘rainbow’
    hrgPlotHclust: no visible global function definition for ‘plot’
    hrgPlotHclust: no visible global function definition for ‘rect.hclust’
    hrgPlotPhylo: no visible global function definition for ‘rainbow’
    hrgPlotPhylo: no visible global function definition for ‘plot’
    igraph.Arrows: no visible global function definition for ‘par’
    igraph.Arrows: no visible global function definition for ‘xyinch’
    igraph.Arrows: no visible global function definition for ‘segments’
    igraph.Arrows: no visible global function definition for ‘xspline’
    igraph.Arrows: no visible global function definition for ‘lines’
    igraph.Arrows: no visible global function definition for ‘polygon’
    igraph.polygon: no visible global function definition for ‘xspline’
    indent_print: no visible global function definition for
     ‘capture.output’
    layout.drl: no visible global function definition for ‘runif’
    layout.sugiyama: no visible global function definition for ‘head’
    layout_with_drl: no visible global function definition for ‘runif’
    layout_with_sugiyama: no visible global function definition for ‘head’
    mypie: no visible global function definition for ‘par’
    mypie: no visible global function definition for ‘polygon’
    nexus.get: no visible global function definition for ‘URLencode’
    nexus.info: no visible global function definition for ‘URLencode’
    nexus.list: no visible global function definition for ‘URLencode’
    nexus.search: no visible global function definition for ‘URLencode’
    nexus_get: no visible global function definition for ‘URLencode’
    nexus_info: no visible global function definition for ‘URLencode’
    nexus_list: no visible global function definition for ‘URLencode’
    nexus_search: no visible global function definition for ‘URLencode’
    plot.cohesiveBlocks: no visible global function definition for
     ‘rainbow’
    plot.cohesiveBlocks: no visible global function definition for ‘plot’
    plot.communities: no visible global function definition for ‘plot’
    plot.igraph: no visible global function definition for ‘rainbow’
    plot.igraph: no visible global function definition for ‘plot’
    plot.igraph : plot.bezier: no visible global function definition for
     ‘polygon’
    plot.igraph : loop: no visible global function definition for ‘text’
    plot.igraph: no visible global function definition for ‘text’
    plot.igraph: no visible global function definition for ‘par’
    plot.igraph : <anonymous>: no visible global function definition for
     ‘text’
    plot.sir: no visible global function definition for ‘plot’
    plot.sir : <anonymous>: no visible global function definition for
     ‘lines’
    plot.sir: no visible global function definition for ‘lines’
    plotHierarchy: no visible global function definition for ‘plot’
    plot_hierarchy: no visible global function definition for ‘plot’
    r_pal: no visible global function definition for ‘palette’
    scan_temp_norm: no visible global function definition for ‘sd’
    scan_vertex_norm: no visible binding for global variable ‘sd’
    time_bins.sir: no visible global function definition for ‘IQR’
    Undefined global functions or variables:
     IQR URLencode as.raster barplot browseURL capture.output coef col2rgb
     dev.new edit head hist layout layout.show legend lines na.omit
     packageDescription packageName palette par plot polygon rainbow
     rasterImage read.table rect.hclust reorder runif sd segments
     setTxtProgressBar symbols text txtProgressBar vcov write.table
     xspline xyinch
    Consider adding
     importFrom("grDevices", "as.raster", "col2rgb", "dev.new", "palette",
     "rainbow")
     importFrom("graphics", "barplot", "hist", "layout", "layout.show",
     "legend", "lines", "par", "plot", "polygon", "rasterImage",
     "segments", "symbols", "text", "xspline", "xyinch")
     importFrom("stats", "IQR", "coef", "na.omit", "rect.hclust", "reorder",
     "runif", "sd", "vcov")
     importFrom("utils", "URLencode", "browseURL", "capture.output", "edit",
     "head", "packageDescription", "packageName", "read.table",
     "setTxtProgressBar", "txtProgressBar", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: compiled code
Result: NOTE
    File ‘igraph/libs/igraph.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.1
Check: installed package size
Result: NOTE
     installed size is 17.6Mb
     sub-directories of 1Mb or more:
     help 1.2Mb
     libs 14.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘graph’
Flavor: r-release-osx-x86_64

Version: 1.0.1
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyInvalid MIT-MAGIC-COOKIE-1 key
Flavor: r-oldrel-osx-x86_64