CRAN Package Check Results for Package intamapInteractive

Last updated on 2018-02-22 10:47:27 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-10 8.77 113.44 122.21 ERROR
r-devel-linux-x86_64-debian-gcc 1.1-10 9.08 101.74 110.82 ERROR
r-devel-linux-x86_64-fedora-clang 1.1-10 201.72 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1-10 194.39 ERROR
r-devel-windows-ix86+x86_64 1.1-10 24.00 165.00 189.00 ERROR
r-patched-linux-x86_64 1.1-10 6.97 172.07 179.04 NOTE
r-patched-solaris-x86 1.1-10 294.10 NOTE
r-release-linux-x86_64 1.1-10 8.31 169.64 177.95 NOTE
r-release-windows-ix86+x86_64 1.1-10 22.00 229.00 251.00 NOTE
r-release-osx-x86_64 1.1-10 NOTE
r-oldrel-windows-ix86+x86_64 1.1-10 15.00 227.00 242.00 NOTE
r-oldrel-osx-x86_64 1.1-10 NOTE

Check Details

Version: 1.1-10
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rgdal’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Missing or unexported object: ‘rgdal::spTransform’
    Unexported objects imported by ':::' calls:
     ‘intamap:::commonArea’ ‘intamap:::estimateAnisotropySc’
     See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-10
Check: R code for possible problems
Result: NOTE
    addManual: no visible global function definition for ‘coordinates’
    addManual: no visible global function definition for ‘title’
    addManual: no visible global function definition for ‘points’
    addManual: no visible global function definition for ‘locator’
    addManual: no visible global function definition for ‘coordinates<-’
    anisotropyChoice: no visible global function definition for
     ‘as.formula’
    anisotropyChoice: no visible global function definition for
     ‘coordinates’
    anisotropyChoice: no visible global function definition for ‘chull’
    anisotropyChoice: no visible global function definition for
     ‘SpatialPoints’
    biasCorr: no visible global function definition for ‘as.formula’
    biasCorr: no visible global function definition for ‘is.projected’
    biasCorr: no visible global function definition for ‘proj4string’
    calculateDensity: no visible global function definition for
     ‘filled.contour’
    calculateDensity: no visible binding for global variable
     ‘terrain.colors’
    calculateDensity: no visible global function definition for
     ‘dev.copy2eps’
    calculateMukv: no visible global function definition for ‘getSlots’
    calculateMukv: no visible global function definition for ‘terms’
    calculateMukv: no visible global function definition for ‘coordinates’
    calculateMukv: no visible global function definition for
     ‘SpatialPointsDataFrame’
    dSolve: no visible global function definition for ‘as.formula’
    dSolve: no visible global function definition for ‘lm’
    delManual: no visible global function definition for ‘title’
    delManual: no visible global function definition for ‘points’
    delManual: no visible global function definition for ‘coordinates’
    delManual: no visible global function definition for ‘identify’
    doSegmentation: no visible global function definition for ‘coordinates’
    fillPerimeters: no visible global function definition for ‘points’
    fillPerimeters: no visible global function definition for
     ‘dev.copy2eps’
    findBiasUK: no visible global function definition for ‘coordinates’
    findBiasUK: no visible global function definition for ‘na.omit’
    findBiasUK: no visible global function definition for ‘coordinates<-’
    findBoundaryLines: no visible global function definition for
     ‘proj4string<-’
    findBoundaryLines: no visible global function definition for ‘CRS’
    findBoundaryLines: no visible global function definition for ‘extends’
    findBoundaryLines: no visible global function definition for
     ‘coordinates<-’
    findBoundaryLines: no visible global function definition for
     ‘is.projected’
    findPerimeters: no visible global function definition for ‘points’
    localNetworkBias: no visible global function definition for ‘write.csv’
    optimizeNetwork: no visible global function definition for
     ‘SpatialPointsDataFrame’
    optimizeNetwork: no visible global function definition for
     ‘coordinates’
    regionalDiff: no visible global function definition for ‘SpatialLines’
    regionalDiff: no visible global function definition for ‘Lines’
    regionalDiff: no visible global function definition for ‘Line’
    regionalDiff: no visible global function definition for ‘coordinates’
    regionalDiff: no visible global function definition for ‘proj4string<-’
    regionalDiff: no visible global function definition for ‘CRS’
    regionalDiff: no visible global function definition for ‘proj4string’
    rmDist: no visible global function definition for ‘sd’
    segmentData: no visible global function definition for ‘points’
    segmentData: no visible global function definition for ‘mtext’
    spCovAdd: no visible global function definition for ‘SpatialPoints’
    spCovAdd: no visible global function definition for ‘coordinates’
    spCovAdd: no visible global function definition for ‘as’
    spCovAdd: no visible global function definition for ‘coordinates<-’
    spCovAdd: no visible global function definition for ‘points’
    spCovAdd: no visible global function definition for ‘title’
    spCovDel: no visible global function definition for ‘coordinates’
    spCovDel: no visible global function definition for ‘coordinates<-’
    spCovDel: no visible global function definition for ‘points’
    spCovDel: no visible global function definition for ‘title’
    ssaMap: no visible global function definition for ‘coordinates’
    ssaMap: no visible global function definition for ‘as.formula’
    ssaMap: no visible global function definition for ‘terms’
    ssaMap: no visible global function definition for ‘bbox’
    ssaMap: no visible global function definition for ‘SpatialPoints’
    ssaMap: no visible global function definition for ‘Polygons’
    ssaMap: no visible global function definition for ‘Polygon’
    ssaMap: no visible global function definition for
     ‘SpatialPolygonsDataFrame’
    ssaMap: no visible global function definition for ‘SpatialPolygons’
    ssaMap: no visible global function definition for ‘runif’
    ssaMap: no visible global function definition for ‘coordinates<-’
    ssaMap: no visible global function definition for ‘zerodist’
    ssaMap: no visible global function definition for ‘proj4string’
    ssaMap: no visible global function definition for ‘over’
    ssaMap: no visible global function definition for ‘CRS’
    ssaMap: no visible global function definition for ‘gridded<-’
    ssaMap: no visible global function definition for ‘points’
    ssaMap: no visible global function definition for ‘title’
    ssaOptim: no visible global function definition for
     ‘SpatialPointsDataFrame’
    ssaOptim: no visible global function definition for ‘coordinates’
    ssaOptim: no visible global function definition for ‘terms’
    ssaOptim: no visible global function definition for ‘model.frame’
    ssaOptim: no visible global function definition for ‘delete.response’
    ssaOptim: no visible global function definition for ‘SpatialPoints’
    ssaOptim: no visible global function definition for ‘gridded<-’
    ssaOptim: no visible global function definition for ‘getSlots’
    ssaOptim: no visible global function definition for ‘proj4string’
    ssaOptim: no visible global function definition for ‘proj4string<-’
    ssaOptim: no visible global function definition for ‘as.formula’
    ssaOptim: no visible global function definition for ‘over’
    ssaOptim: no visible global function definition for ‘CRS’
    ssaOptim: no visible global function definition for ‘setNames’
    Undefined global functions or variables:
     CRS Line Lines Polygon Polygons SpatialLines SpatialPoints
     SpatialPointsDataFrame SpatialPolygons SpatialPolygonsDataFrame as
     as.formula bbox chull coordinates coordinates<- delete.response
     dev.copy2eps extends filled.contour getSlots gridded<- identify
     is.projected lm locator model.frame mtext na.omit over points
     proj4string proj4string<- runif sd setNames terms terrain.colors
     title write.csv zerodist
    Consider adding
     importFrom("grDevices", "chull", "dev.copy2eps", "terrain.colors")
     importFrom("graphics", "filled.contour", "identify", "locator",
     "mtext", "points", "title")
     importFrom("methods", "as", "extends", "getSlots")
     importFrom("stats", "as.formula", "delete.response", "lm",
     "model.frame", "na.omit", "runif", "sd", "setNames",
     "terms")
     importFrom("utils", "write.csv")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1-10
Check: examples
Result: ERROR
    Running examples in ‘intamapInteractive-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: findRegionalBias
    > ### Title: Find and/or remove regional biases
    > ### Aliases: findRegionalBias removeRegionalBias
    > ### Keywords: spatial
    >
    > ### ** Examples
    >
    > library(intamapInteractive)
    > data(meuse)
    > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
    > coordinates(observations) = ~x+y
    > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
    + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
    > gridded(pBoundaries) = TRUE
    > cs = pBoundaries@grid@cellsize[1]/2
    >
    > Srl = list()
    > nb = dim(coordinates(pBoundaries))[1]
    > for (i in 1:nb) {
    + pt1 = coordinates(pBoundaries)[i,]
    + x1 = pt1[1]-cs
    + x2 = pt1[1]+cs
    + y1 = pt1[2]-cs
    + y2 = pt1[2]+cs
    +
    + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
    + coordinates(boun) = ~x+y
    + boun = Polygon(boun)
    + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
    + }
    > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
    + data = data.frame(ID=c(1:nb)))
    > observations$ID = over(observations, geometry(pBoundaries))
    > blines = findBoundaryLines(pBoundaries, regCode = "ID")
    > rb = findRegionalBias(observations, blines, value~1, regCode = "ID")
    interpolating border between 12 9
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    interpolating border between 9 8
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    interpolating border between 5 2
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
    Calls: findRegionalBias -> data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.1-10
Check: tests
Result: ERROR
     Running ‘anisotropyChoice.R’ [5s/5s]
     Running ‘biasCorr.R’ [5s/5s]
    Running the tests in ‘tests/biasCorr.R’ failed.
    Complete output:
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     > set.seed(1)
     > data(meuse)
     > data(meuse.grid)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > gridded(meuse.grid) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     >
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries,regCode = "ID")
     >
     >
     > object = createIntamapObject(observations,meuse.grid,boundaryLines = blines,
     + params = list(removeBias = "regionalBias"))
     [1] "createIntamapObject: formulaString is missing, using: value~1"
     Warning messages:
     1: In is.na(obsChar) :
     is.na() applied to non-(list or vector) of type 'S4'
     2: In createIntamapObject(observations, meuse.grid, boundaryLines = blines, :
     createIntamapObject: No prediction locations submitted - sampling from bbox of observations
     > object = biasCorr(object,regCode= "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: biasCorr -> findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1-10
Check: tests
Result: ERROR
     Running ‘anisotropyChoice.R’ [5s/7s]
     Running ‘biasCorr.R’ [5s/7s]
    Running the tests in ‘tests/biasCorr.R’ failed.
    Complete output:
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     > set.seed(1)
     > data(meuse)
     > data(meuse.grid)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > gridded(meuse.grid) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     >
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries,regCode = "ID")
     >
     >
     > object = createIntamapObject(observations,meuse.grid,boundaryLines = blines,
     + params = list(removeBias = "regionalBias"))
     [1] "createIntamapObject: formulaString is missing, using: value~1"
     Warning messages:
     1: In is.na(obsChar) :
     is.na() applied to non-(list or vector) of type 'S4'
     2: In createIntamapObject(observations, meuse.grid, boundaryLines = blines, :
     createIntamapObject: No prediction locations submitted - sampling from bbox of observations
     > object = biasCorr(object,regCode= "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: biasCorr -> findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1-10
Check: examples
Result: ERROR
    Running examples in ‘intamapInteractive-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: findRegionalBias
    > ### Title: Find and/or remove regional biases
    > ### Aliases: findRegionalBias removeRegionalBias
    > ### Keywords: spatial
    >
    > ### ** Examples
    >
    > library(intamapInteractive)
    > data(meuse)
    > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
    > coordinates(observations) = ~x+y
    > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
    + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
    > gridded(pBoundaries) = TRUE
    > cs = pBoundaries@grid@cellsize[1]/2
    >
    > Srl = list()
    > nb = dim(coordinates(pBoundaries))[1]
    > for (i in 1:nb) {
    + pt1 = coordinates(pBoundaries)[i,]
    + x1 = pt1[1]-cs
    + x2 = pt1[1]+cs
    + y1 = pt1[2]-cs
    + y2 = pt1[2]+cs
    +
    + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
    + coordinates(boun) = ~x+y
    + boun = Polygon(boun)
    + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
    + }
    > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
    + data = data.frame(ID=c(1:nb)))
    > observations$ID = over(observations, geometry(pBoundaries))
    > blines = findBoundaryLines(pBoundaries, regCode = "ID")
    > rb = findRegionalBias(observations, blines, value~1, regCode = "ID")
    interpolating border between 12 9
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    interpolating border between 9 8
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    interpolating border between 5 2
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Warning in validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
    [using ordinary kriging]
    Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
    Calls: findRegionalBias -> data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-10
Check: tests
Result: ERROR
     Running ‘anisotropyChoice.R’
     Running ‘biasCorr.R’
     Running ‘findLocalBias.R’
     Running ‘findRegionalBias.R’
     Running ‘optimizingTest.R’ [25s/28s]
    Running the tests in ‘tests/biasCorr.R’ failed.
    Complete output:
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     > set.seed(1)
     > data(meuse)
     > data(meuse.grid)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > gridded(meuse.grid) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     >
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries,regCode = "ID")
     >
     >
     > object = createIntamapObject(observations,meuse.grid,boundaryLines = blines,
     + params = list(removeBias = "regionalBias"))
     [1] "createIntamapObject: formulaString is missing, using: value~1"
     Warning messages:
     1: In is.na(obsChar) :
     is.na() applied to non-(list or vector) of type 'S4'
     2: In createIntamapObject(observations, meuse.grid, boundaryLines = blines, :
     createIntamapObject: No prediction locations submitted - sampling from bbox of observations
     > object = biasCorr(object,regCode= "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: biasCorr -> findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
    Running the tests in ‘tests/findRegionalBias.R’ failed.
    Complete output:
     > set.seed(1)
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     >
     > data(meuse)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries, regCode = "ID")
     > rb = findRegionalBias(observations, blines, value~1, regCode = "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1-10
Check: tests
Result: ERROR
     Running ‘anisotropyChoice.R’
     Running ‘biasCorr.R’
     Running ‘findLocalBias.R’
     Running ‘findRegionalBias.R’
     Running ‘optimizingTest.R’ [23s/26s]
    Running the tests in ‘tests/biasCorr.R’ failed.
    Complete output:
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     > set.seed(1)
     > data(meuse)
     > data(meuse.grid)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > gridded(meuse.grid) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     >
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries,regCode = "ID")
     >
     >
     > object = createIntamapObject(observations,meuse.grid,boundaryLines = blines,
     + params = list(removeBias = "regionalBias"))
     [1] "createIntamapObject: formulaString is missing, using: value~1"
     Warning messages:
     1: In is.na(obsChar) :
     is.na() applied to non-(list or vector) of type 'S4'
     2: In createIntamapObject(observations, meuse.grid, boundaryLines = blines, :
     createIntamapObject: No prediction locations submitted - sampling from bbox of observations
     > object = biasCorr(object,regCode= "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: biasCorr -> findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
    Running the tests in ‘tests/findRegionalBias.R’ failed.
    Complete output:
     > set.seed(1)
     > library(intamapInteractive)
     Loading required package: intamap
     Loading required package: sp
     >
     > data(meuse)
     > observations = data.frame(x = meuse$x,y = meuse$y,value = log(meuse$zinc))
     > coordinates(observations) = ~x+y
     > pBoundaries = spsample(observations, 10, "regular",bb = bbox(observations) +
     + matrix(c(-400,-400,400,400),ncol=2),offset=c(0,0))
     > gridded(pBoundaries) = TRUE
     > cs = pBoundaries@grid@cellsize[1]/2
     >
     > Srl = list()
     > nb = dim(coordinates(pBoundaries))[1]
     > for (i in 1:nb) {
     + pt1 = coordinates(pBoundaries)[i,]
     + x1 = pt1[1]-cs
     + x2 = pt1[1]+cs
     + y1 = pt1[2]-cs
     + y2 = pt1[2]+cs
     +
     + boun = data.frame(x=c(x1,x2,x2,x1,x1),y=c(y1,y1,y2,y2,y1))
     + coordinates(boun) = ~x+y
     + boun = Polygon(boun)
     + Srl[[i]] = Polygons(list(boun),ID = as.character(i))
     + }
     > pBoundaries = SpatialPolygonsDataFrame(SpatialPolygons(Srl),
     + data = data.frame(ID=c(1:nb)))
     > observations$ID = over(observations, geometry(pBoundaries))
     > blines = findBoundaryLines(pBoundaries, regCode = "ID")
     > rb = findRegionalBias(observations, blines, value~1, regCode = "ID")
     interpolating border between 12 9
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 9 8
     [using ordinary kriging]
     [using ordinary kriging]
     interpolating border between 5 2
     [using ordinary kriging]
     [using ordinary kriging]
     Error in data.frame(regCode = uRegCode, cBias) :
     arguments imply differing number of rows: 8, 6
     Calls: findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1-10
Check: tests
Result: ERROR
     Running 'anisotropyChoice.R' [6s]
     Running 'biasCorr.R' [6s]
     Running 'findLocalBias.R' [4s]
     Running 'findRegionalBias.R' [6s]
     Running 'optimizingTest.R' [20s]
    Running the tests in 'tests/biasCorr.R' failed.
    Last 13 lines of output:
     Calls: biasCorr -> findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
    Running the tests in 'tests/findRegionalBias.R' failed.
    Last 13 lines of output:
     Calls: findRegionalBias -> data.frame
     In addition: Warning messages:
     1: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     2: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     3: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     4: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     5: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     6: In validityMethod(object) :
     duplicate rownames are interpreted by rgeos as MultiPoints; use SpatialMultiPoints to define these; in future sp versions this warning will become an error
     Execution halted
Flavor: r-devel-windows-ix86+x86_64