CRAN Package Check Results for Package joineR

Last updated on 2015-09-01 05:48:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-3 1.60 54.63 56.22 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-3 1.56 55.03 56.59 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-3 112.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-3 107.37 NOTE
r-devel-osx-x86_64-clang 1.0-3 110.50 NOTE
r-devel-windows-ix86+x86_64 1.0-3 12.00 135.00 147.00 NOTE
r-patched-linux-x86_64 1.0-3 1.63 58.66 60.28 NOTE
r-patched-solaris-sparc 1.0-3 702.10 NOTE
r-patched-solaris-x86 1.0-3 157.90 NOTE
r-release-linux-x86_64 1.0-3 1.91 59.40 61.31 NOTE
r-release-osx-x86_64-mavericks 1.0-3 NOTE
r-release-windows-ix86+x86_64 1.0-3 8.00 98.00 106.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-3 12.00 117.00 129.00 NOTE

Check Details

Version: 1.0-3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘nlme’ ‘MASS’ ‘boot’ ‘survival’ ‘lattice’ ‘statmod’ ‘gdata’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     lines.jointdata plot.jointdata plot.vargm points.jointdata
     subset.jointdata summary.joint summary.jointdata
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    joint: no visible global function definition for ‘model.frame’
    joint: no visible global function definition for ‘model.matrix’
    joint: no visible global function definition for ‘terms’
    joint: no visible global function definition for ‘model.extract’
    joint : longst: no visible global function definition for ‘as.formula’
    joint : longst: no visible binding for global variable ‘na.omit’
    joint : survst: no visible global function definition for ‘coef’
    jointSE: no visible global function definition for ‘model.frame’
    jointSE: no visible global function definition for ‘var’
    jointplot: no visible global function definition for ‘lowess’
    lines.jointdata: no visible global function definition for ‘lines’
    plot.jointdata: no visible global function definition for ‘par’
    plot.jointdata: no visible global function definition for ‘plot’
    plot.jointdata: no visible global function definition for ‘points’
    plot.jointdata : <anonymous>: no visible global function definition for
     ‘lines’
    plot.vargm: no visible global function definition for ‘plot’
    plot.vargm: no visible global function definition for ‘lines’
    plot.vargm: no visible global function definition for ‘smooth.spline’
    plot.vargm: no visible global function definition for ‘abline’
    points.jointdata: no visible global function definition for ‘points’
    summarybal : <anonymous>: no visible global function definition for
     ‘var’
    summarybal: no visible global function definition for ‘cor’
    Undefined global functions or variables:
     abline as.formula coef cor lines lowess model.extract model.frame
     model.matrix na.omit par plot points smooth.spline terms var
    Consider adding
     importFrom("graphics", "abline", "lines", "par", "plot", "points")
     importFrom("stats", "as.formula", "coef", "cor", "lowess",
     "model.extract", "model.frame", "model.matrix", "na.omit",
     "smooth.spline", "terms", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64