CRAN Package Check Results for Package joinet

Last updated on 2019-11-12 03:49:05 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.2 2.36 37.13 39.49 ERROR
r-devel-linux-x86_64-debian-gcc 0.0.2 1.82 28.99 30.81 ERROR
r-devel-linux-x86_64-fedora-clang 0.0.2 49.28 ERROR
r-devel-linux-x86_64-fedora-gcc 0.0.2 48.45 ERROR
r-devel-windows-ix86+x86_64 0.0.2 5.00 62.00 67.00 OK
r-patched-linux-x86_64 0.0.2 1.94 35.13 37.07 ERROR
r-patched-solaris-x86 0.0.2 69.50 ERROR
r-release-linux-x86_64 0.0.2 1.84 46.32 48.16 OK
r-release-windows-ix86+x86_64 0.0.2 8.00 78.00 86.00 OK
r-release-osx-x86_64 0.0.2 OK
r-oldrel-windows-ix86+x86_64 0.0.2 3.00 76.00 79.00 OK
r-oldrel-osx-x86_64 0.0.2 OK

Check Details

Version: 0.0.2
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: 'glmnet::predict.cv.glmnet'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in 'joinet-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cv.joinet
    > ### Title: Model comparison
    > ### Aliases: cv.joinet
    >
    > ### ** Examples
    >
    > n <- 50; p <- 100; q <- 3
    > X <- matrix(rnorm(n*p),nrow=n,ncol=p)
    > Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
    > cv.joinet(Y=Y,X=X)
    Error: 'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.0.2
Check: tests
Result: ERROR
     Running 'testthat.R' [5s/6s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     -- 1. Error: predict: glmnet = joinet (@test.R#77) ----------------------------
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     -- 2. Error: stacking = pooling (@test.R#88) ----------------------------------
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     -- 3. Error: predict: glmnet = joinet (@test.R#77) ----------------------------
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     -- 4. Error: stacking = pooling (@test.R#88) ----------------------------------
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     == testthat results ===========================================================
     [ OK: 89 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 4 ]
     1. Error: predict: glmnet = joinet (@test.R#77)
     2. Error: stacking = pooling (@test.R#88)
     3. Error: predict: glmnet = joinet (@test.R#77)
     4. Error: stacking = pooling (@test.R#88)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'article.Rmd' using rmarkdown
    --- finished re-building 'article.Rmd'
    
    --- re-building 'vignette.Rmd' using rmarkdown
    Quitting from lines 121-122 (vignette.Rmd)
    Error: processing vignette 'vignette.Rmd' failed with diagnostics:
    'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    --- failed re-building 'vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     ── 1. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 2. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 3. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 4. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 89 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 4 ]
     1. Error: predict: glmnet = joinet (@test.R#77)
     2. Error: stacking = pooling (@test.R#88)
     3. Error: predict: glmnet = joinet (@test.R#77)
     4. Error: stacking = pooling (@test.R#88)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in ‘joinet-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cv.joinet
    > ### Title: Model comparison
    > ### Aliases: cv.joinet
    >
    > ### ** Examples
    >
    > n <- 50; p <- 100; q <- 3
    > X <- matrix(rnorm(n*p),nrow=n,ncol=p)
    > Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
    > cv.joinet(Y=Y,X=X)
    Error: 'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     ── 1. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 2. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 3. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 4. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 89 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 4 ]
     1. Error: predict: glmnet = joinet (@test.R#77)
     2. Error: stacking = pooling (@test.R#88)
     3. Error: predict: glmnet = joinet (@test.R#77)
     4. Error: stacking = pooling (@test.R#88)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘article.Rmd’ using rmarkdown
    --- finished re-building ‘article.Rmd’
    
    --- re-building ‘vignette.Rmd’ using rmarkdown
    Quitting from lines 121-122 (vignette.Rmd)
    Error: processing vignette 'vignette.Rmd' failed with diagnostics:
    'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
    --- failed re-building ‘vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     ── 1. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 2. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 3. Error: predict: glmnet = joinet (@test.R#77) ────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object = object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ── 4. Error: stacking = pooling (@test.R#88) ──────────────────────────────────
     'predict.cv.glmnet' is not an exported object from 'namespace:glmnet'
     Backtrace:
     1. joinet:::predict.joinet(object, newx = X)
     2. glmnet::predict.cv.glmnet
     3. base::getExportedValue(pkg, name)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 89 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 4 ]
     1. Error: predict: glmnet = joinet (@test.R#77)
     2. Error: stacking = pooling (@test.R#88)
     3. Error: predict: glmnet = joinet (@test.R#77)
     4. Error: stacking = pooling (@test.R#88)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.0.2
Check: examples
Result: ERROR
    Running examples in ‘joinet-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: coef.joinet
    > ### Title: Extract Coefficients
    > ### Aliases: coef.joinet
    >
    > ### ** Examples
    >
    > n <- 50; p <- 100; q <- 3
    > X <- matrix(rnorm(n*p),nrow=n,ncol=p)
    > Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
    > object <- joinet(Y=Y,X=X)
    Error in approx(lambda, seq(lambda), sfrac) :
     need at least two non-NA values to interpolate
    Calls: joinet ... NextMethod -> predict.glmnet -> lambda.interp -> approx
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.2
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     ── 1. Error: (unknown) (@test.R#24) ───────────────────────────────────────────
     need at least two non-NA values to interpolate
     Backtrace:
     1. joinet::joinet(...)
     2. glmnet::cv.glmnet(...)
     3. glmnet:::cv.glmnet.raw(...)
     5. glmnet:::buildPredmat.default(...)
     9. glmnet::predict.glmnet(...)
     10. glmnet:::lambda.interp(lambda, s)
     11. stats::approx(lambda, seq(lambda), sfrac)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 3 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: (unknown) (@test.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘article.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    --- finished re-building ‘article.Rmd’
    
    --- re-building ‘vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Quitting from lines 105-106 (vignette.Rmd)
    Error: processing vignette 'vignette.Rmd' failed with diagnostics:
    need at least two non-NA values to interpolate
    --- failed re-building ‘vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86